View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11856_low_37 (Length: 367)
Name: NF11856_low_37
Description: NF11856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11856_low_37 |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 361
Target Start/End: Complemental strand, 36256695 - 36256352
Alignment:
| Q |
18 |
gtatcgtgaaataaccaataaatgtgcatatctgtttagtaccgatcttatgaactttaatgttaagttcatcaagagacaggcnnnnnnngttgttcat |
117 |
Q |
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| T |
36256695 |
gtatcgtgaaataatcagtaaatgtgcatatctgtttagtaccgatcttatgaactttaatgttaagttcatcaagagacaggcaaaaaaagttgttcat |
36256596 |
T |
|
| Q |
118 |
aattagttaggatggctccgtcgatttctgtatttattctaatatcccaacatgtatcaaatctactattataaataaaatgcattaaactttgttattg |
217 |
Q |
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| T |
36256595 |
aattaattaggatagctccgtcggtttctgtatttattctaatatcccaacatgtatcaaatctactattataaataaaatgcattaaactttgtcattg |
36256496 |
T |
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| Q |
218 |
tcnnnnnnntatatcatacttaaatattagcataattgttgaccatgtttaattacactttcatcatctcttaggttagagaagaaaaacactgccatcc |
317 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
36256495 |
tcaaaaaaaaatatcatacttaaatattagcataattgttgaccatgtttaattacactttcatcatctcttaggttagagaagaaaaacacagtcatcc |
36256396 |
T |
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| Q |
318 |
gtgattgtttttaaacattttgccttgacaaatacctatgctac |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
36256395 |
gtgattgtttttaaacattttgccttgacaaatacctacgctac |
36256352 |
T |
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