View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11856_low_4 (Length: 788)
Name: NF11856_low_4
Description: NF11856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11856_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 438; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 20 - 490
Target Start/End: Complemental strand, 44650638 - 44650167
Alignment:
| Q |
20 |
agctccaaagtcaccatgtccaaataattgtgaatctccaccaatgactccatacccaccacaaaattcatattttccaccaggaacaccatttccatat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44650638 |
agctccaaagtcaccatgtccaaataattgtgaatctccaccaatgactccatacccaccacaaaattcatattttccaccaggaacaccatttccatat |
44650539 |
T |
|
| Q |
120 |
tatgtacctccagattattataacaagaatagcggtgaaacgttggttccatttcaaccaatattcttctcgaacccgaattctcactttgtgtactcca |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44650538 |
tatgtacctccagattattataacaagaatagcggtgaaacgttggttccatttcaagcaatattcttctcgaacccgaattctcactttgtgtactcca |
44650439 |
T |
|
| Q |
220 |
taattcaatgtttgattaatttgctctttctctgccttccatattgtataatttataggtgaattgttgttatggtaattcacgtccttaatttgtgctt |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
44650438 |
taattcaatgtttgattaatttgctctttctctgccttccata-tgtataatttataggtaaattattgttatggtagttcacgtccttaatttgtgctt |
44650340 |
T |
|
| Q |
320 |
ccatattgtatacttttaagttaactttggtaattcattcatggtccttagtttgtgctttcgagaccgagtagctctatactagaagactc--atatat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
44650339 |
ccatattgtatacttttaagttaactttggtaattcattcatggtccttagtttgtgctttcgagaccgagtagctctatactagaagactcagatatat |
44650240 |
T |
|
| Q |
418 |
attcgcatgacaaatgatagaaatcaaacatctttgtaaagtttgagagttcccacctttaatcaaacaatcg |
490 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44650239 |
attcgcatgacaaatgatagaaatcaaacatctttgtaaagtttgagagttcccacctttaatcaaacaatcg |
44650167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 504 - 777
Target Start/End: Complemental strand, 44650141 - 44649868
Alignment:
| Q |
504 |
acaataatcaatcgctannnnnnnaaaggatcaaacaatcacctggtctttgttaattgttagatttcttattatttttccgttaaatggaaattgtcat |
603 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44650141 |
acaataatcaatcgctatttttttaaaggatcaaacaatcacctggtctttgttaattgttagatttcttattatttttccgttaaatggaaattgtcat |
44650042 |
T |
|
| Q |
604 |
attcaaatcgtgtgtatcctctnnnnnnnntcatgtgaatatgtagcaaactttttgataaagaaatccttaatttacaaaccccatgtagcttatgcaa |
703 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44650041 |
attcaaatcgtgtgtatcctctaaaaaaaatcatgtgaatatgtagcaaactttttgataaagaaatccttaatttacaaaccccatgtagcttatgcaa |
44649942 |
T |
|
| Q |
704 |
gaggatagtcaatagaacctaactccaaaccaaaacaagcaaattaataagacaaaaacttgtttacggttcat |
777 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44649941 |
gaggatagtcaatagaacctaacaccaaaccaaaacaagcaaattaataagacaaaaacttgtttacggttcat |
44649868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University