View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11856_low_41 (Length: 358)
Name: NF11856_low_41
Description: NF11856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11856_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 8 - 257
Target Start/End: Complemental strand, 51300556 - 51300309
Alignment:
| Q |
8 |
gttagtgcagattttttggccaaattgtgttgaaacgatgccaagttcaagatttgggactccccatgggaagacttgaaatcttttcttttaaatgact |
107 |
Q |
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|||||||||||||||||||||||||||||| | | || ||||||||||||||||||||||||| ||| |||| |||||| ||||||||||||| ||||| |
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| T |
51300556 |
gttagtgcagattttttggccaaattgtgtggcatcgttgccaagttcaagatttgggactcctcataagaaggcttgaattcttttcttttaagtgact |
51300457 |
T |
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| Q |
108 |
ccttgaaagttctttatccttgaaactaannnnnnnnnnaagcatatctacccnnnnnnnttcttgataagctgaaatttcttagtttatgatccaattt |
207 |
Q |
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|||||||||||||||||||||| |||||| |||||||| ||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
51300456 |
ccttgaaagttctttatccttggaactaagtttttttttaagcatatgtacccaaaaaaaatcttgataagctgaaatttcttagtttacgatccaattt |
51300357 |
T |
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| Q |
208 |
tgattaaaaaagaaacaatagattttctttctcatagcccaaaaacttag |
257 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
51300356 |
tgattaaaaa--aaacaatagattttctttctcatagcccaaaaacttag |
51300309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 127
Target Start/End: Original strand, 34721594 - 34721672
Alignment:
| Q |
49 |
caagttcaagatttgggactccccatgggaagacttgaaatcttttcttttaaatgactccttgaaagttctttatcct |
127 |
Q |
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|||||| |||||||||||||| || ||||||||||| ||||||||||||| |||||| |||| |||||||||||| |
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| T |
34721594 |
caagttaaagatttgggactctcctccagaagacttgaattcttttcttttaagtgactcattgagggttctttatcct |
34721672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 45646270 - 45646329
Alignment:
| Q |
49 |
caagttcaagatttgggactccccatgggaagacttgaaatcttttcttttaaatgactc |
108 |
Q |
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| T |
45646270 |
caagttcaagatttgggactccccaccagaagacttgaattcttttattttaagtgactc |
45646329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 127
Target Start/End: Original strand, 42296583 - 42296657
Alignment:
| Q |
53 |
ttcaagatttgggactccccatgggaagacttgaaatcttttcttttaaatgactccttgaaagttctttatcct |
127 |
Q |
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||||||||||||||||| || | |||| ||||| ||||||||||||| ||||||||||| |||||||||||| |
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| T |
42296583 |
ttcaagatttgggactctcctctgaaagatttgaattcttttcttttaagtgactccttgagggttctttatcct |
42296657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 113
Target Start/End: Original strand, 26144005 - 26144077
Alignment:
| Q |
41 |
aacgatgccaagttcaagatttgggactccccatgggaagacttgaaatcttttcttttaaatgactccttga |
113 |
Q |
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||||||| | ||||||||||||| ||||||||| | ||||||| || | ||||||||||| ||| ||||||| |
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| T |
26144005 |
aacgatgaccagttcaagatttgagactccccaccgaaagacttcaattattttcttttaagtgattccttga |
26144077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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