View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11856_low_42 (Length: 347)

Name: NF11856_low_42
Description: NF11856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11856_low_42
NF11856_low_42
[»] chr8 (31 HSPs)
chr8 (18-337)||(32779946-32780269)
chr8 (20-218)||(14237324-14237526)
chr8 (59-218)||(32998494-32998656)
chr8 (20-188)||(2766064-2766236)
chr8 (59-218)||(18044469-18044632)
chr8 (20-218)||(132061-132263)
chr8 (57-218)||(41263854-41264019)
chr8 (20-218)||(623220-623422)
chr8 (49-218)||(5878360-5878533)
chr8 (62-218)||(616827-616987)
chr8 (57-216)||(36919669-36919831)
chr8 (59-218)||(42587303-42587466)
chr8 (40-193)||(18090397-18090553)
chr8 (73-218)||(40494428-40494577)
chr8 (50-143)||(22489320-22489413)
chr8 (20-218)||(33700089-33700291)
chr8 (62-188)||(36641916-36642046)
chr8 (81-214)||(3370333-3370470)
chr8 (20-143)||(24524209-24524331)
chr8 (59-143)||(36167830-36167915)
chr8 (59-143)||(38957292-38957377)
chr8 (60-218)||(11637826-11637988)
chr8 (18-143)||(18020991-18021117)
chr8 (72-143)||(8394468-8394540)
chr8 (107-218)||(13216825-13216939)
chr8 (57-143)||(40204775-40204862)
chr8 (50-143)||(38958807-38958901)
chr8 (89-188)||(3100580-3100683)
chr8 (60-188)||(18035174-18035304)
chr8 (107-143)||(148148-148184)
chr8 (60-146)||(35403635-35403723)
[»] chr6 (28 HSPs)
chr6 (20-188)||(12226049-12226221)
chr6 (59-218)||(18668743-18668906)
chr6 (20-184)||(21540645-21540813)
chr6 (62-218)||(22054816-22054976)
chr6 (62-218)||(32414737-32414897)
chr6 (59-143)||(32671938-32672023)
chr6 (62-188)||(19088016-19088146)
chr6 (60-143)||(3989321-3989404)
chr6 (72-188)||(6563300-6563420)
chr6 (62-218)||(24623999-24624159)
chr6 (20-216)||(24955412-24955612)
chr6 (65-143)||(16192943-16193022)
chr6 (59-143)||(10520590-10520675)
chr6 (50-221)||(28477794-28477969)
chr6 (62-188)||(4148005-4148135)
chr6 (60-143)||(25475869-25475953)
chr6 (59-188)||(20226353-20226486)
chr6 (59-188)||(22120337-22120470)
chr6 (50-219)||(29790249-29790422)
chr6 (50-143)||(1040946-1041040)
chr6 (20-218)||(10298590-10298791)
chr6 (61-143)||(17257708-17257791)
chr6 (20-221)||(29693924-29694129)
chr6 (49-143)||(31869858-31869953)
chr6 (109-219)||(19240701-19240811)
chr6 (20-143)||(20437033-20437153)
chr6 (107-218)||(17213888-17214002)
chr6 (57-113)||(21162930-21162986)
[»] chr7 (46 HSPs)
chr7 (20-216)||(7169172-7169369)
chr7 (20-218)||(20885147-20885349)
chr7 (50-194)||(39278380-39278525)
chr7 (20-218)||(39129942-39130144)
chr7 (20-218)||(40089934-40090136)
chr7 (59-216)||(7438949-7439110)
chr7 (59-188)||(16778579-16778712)
chr7 (59-188)||(32431413-32431546)
chr7 (62-218)||(28061573-28061733)
chr7 (20-204)||(28601489-28601673)
chr7 (62-218)||(36623352-36623512)
chr7 (62-218)||(38851905-38852065)
chr7 (62-218)||(47156071-47156231)
chr7 (59-143)||(46321207-46321292)
chr7 (62-188)||(35117199-35117329)
chr7 (71-218)||(36585153-36585303)
chr7 (62-188)||(41898062-41898192)
chr7 (62-188)||(48602510-48602640)
chr7 (43-218)||(26161640-26161822)
chr7 (62-218)||(36341664-36341824)
chr7 (62-218)||(42890402-42890561)
chr7 (59-143)||(41088709-41088794)
chr7 (59-217)||(40256102-40256263)
chr7 (20-193)||(3785589-3785766)
chr7 (62-143)||(23707481-23707563)
chr7 (20-188)||(30342148-30342319)
chr7 (60-188)||(44732086-44732218)
chr7 (49-196)||(5529077-5529228)
chr7 (35-218)||(24177000-24177185)
chr7 (72-143)||(21379866-21379938)
chr7 (49-219)||(27045453-27045627)
chr7 (60-143)||(41134544-41134628)
chr7 (62-188)||(46103428-46103558)
chr7 (59-188)||(11502635-11502768)
chr7 (60-176)||(5788433-5788553)
chr7 (56-175)||(2952537-2952660)
chr7 (46-221)||(49110512-49110691)
chr7 (152-219)||(4131655-4131722)
chr7 (89-167)||(5084921-5085002)
chr7 (62-143)||(8683937-8684019)
chr7 (107-193)||(44594627-44594712)
chr7 (72-188)||(46479903-46480023)
chr7 (107-188)||(35570153-35570237)
chr7 (107-143)||(45332039-45332075)
chr7 (20-100)||(47525870-47525950)
chr7 (107-143)||(48516300-48516336)
[»] chr3 (30 HSPs)
chr3 (20-216)||(25527450-25527647)
chr3 (59-218)||(6910378-6910541)
chr3 (50-188)||(33415873-33416015)
chr3 (62-218)||(13499393-13499553)
chr3 (62-218)||(20765240-20765400)
chr3 (20-188)||(21005367-21005539)
chr3 (62-218)||(27334789-27334949)
chr3 (62-218)||(30213848-30214007)
chr3 (62-218)||(39866199-39866359)
chr3 (20-188)||(43181372-43181543)
chr3 (50-143)||(43467788-43467882)
chr3 (65-193)||(3430338-3430467)
chr3 (62-188)||(27010532-27010662)
chr3 (62-218)||(21797600-21797760)
chr3 (50-143)||(32220955-32221049)
chr3 (74-218)||(42490266-42490414)
chr3 (118-199)||(41252881-41252962)
chr3 (20-188)||(15332822-15332994)
chr3 (62-218)||(42761541-42761701)
chr3 (20-143)||(44561906-44562030)
chr3 (74-144)||(19824016-19824087)
chr3 (59-188)||(33803596-33803729)
chr3 (52-212)||(41943264-41943429)
chr3 (20-219)||(47164465-47164672)
chr3 (159-218)||(27813447-27813506)
chr3 (152-211)||(44856397-44856456)
chr3 (59-109)||(42049912-42049962)
chr3 (59-143)||(36227667-36227752)
chr3 (20-100)||(28690414-28690494)
chr3 (107-143)||(42469571-42469607)
[»] chr4 (48 HSPs)
chr4 (20-218)||(2760746-2760945)
chr4 (50-188)||(10550500-10550639)
chr4 (59-216)||(26125754-26125915)
chr4 (20-146)||(32364348-32364475)
chr4 (62-218)||(29830387-29830547)
chr4 (60-193)||(32871416-32871552)
chr4 (62-218)||(44232135-44232295)
chr4 (59-218)||(17610324-17610487)
chr4 (20-218)||(47386302-47386504)
chr4 (65-216)||(2570943-2571098)
chr4 (59-143)||(9029504-9029589)
chr4 (50-217)||(54330736-54330907)
chr4 (20-143)||(17446649-17446773)
chr4 (59-221)||(38721378-38721544)
chr4 (62-188)||(43967797-43967927)
chr4 (62-188)||(55209632-55209762)
chr4 (59-188)||(19433413-19433546)
chr4 (43-218)||(25296618-25296798)
chr4 (62-218)||(38416708-38416868)
chr4 (107-188)||(39307770-39307854)
chr4 (20-188)||(45291906-45292078)
chr4 (23-218)||(36522987-36523186)
chr4 (59-143)||(55191946-55192031)
chr4 (40-144)||(5118838-5118941)
chr4 (20-213)||(7614664-7614861)
chr4 (59-188)||(12625325-12625458)
chr4 (63-188)||(4467579-4467707)
chr4 (57-188)||(12240230-12240366)
chr4 (60-176)||(25918289-25918409)
chr4 (77-143)||(50620756-50620822)
chr4 (23-143)||(29052183-29052303)
chr4 (64-144)||(53816455-53816535)
chr4 (118-193)||(55091302-55091380)
chr4 (107-186)||(34316596-34316675)
chr4 (61-188)||(26170060-26170192)
chr4 (71-143)||(6013084-6013157)
chr4 (32-188)||(23360249-23360406)
chr4 (20-188)||(30446371-30446547)
chr4 (59-143)||(35686529-35686614)
chr4 (149-221)||(3037021-3037093)
chr4 (44-143)||(20651531-20651631)
chr4 (20-140)||(40682733-40682853)
chr4 (50-221)||(50685242-50685419)
chr4 (73-178)||(37767025-37767136)
chr4 (59-171)||(25633370-25633483)
chr4 (118-178)||(30191588-30191651)
chr4 (107-188)||(52227099-52227180)
chr4 (60-143)||(50205865-50205949)
[»] chr1 (33 HSPs)
chr1 (62-218)||(6766416-6766573)
chr1 (60-193)||(30385204-30385338)
chr1 (20-143)||(30701840-30701964)
chr1 (59-188)||(4302192-4302322)
chr1 (62-218)||(6402468-6402628)
chr1 (20-218)||(17305998-17306200)
chr1 (20-221)||(44647729-44647934)
chr1 (59-188)||(52024100-52024233)
chr1 (62-218)||(11641125-11641285)
chr1 (62-218)||(36757544-36757704)
chr1 (59-143)||(36399220-36399305)
chr1 (59-143)||(42367351-42367436)
chr1 (59-193)||(9342700-9342838)
chr1 (57-143)||(25171276-25171362)
chr1 (62-143)||(27292762-27292844)
chr1 (60-188)||(42735221-42735353)
chr1 (61-188)||(40771829-40771960)
chr1 (57-143)||(16887940-16888027)
chr1 (20-216)||(9881322-9881522)
chr1 (20-221)||(44644375-44644576)
chr1 (60-218)||(30003577-30003740)
chr1 (63-146)||(26910195-26910279)
chr1 (59-218)||(38153332-38153495)
chr1 (36-143)||(42788575-42788682)
chr1 (62-199)||(19711750-19711891)
chr1 (20-188)||(27984629-27984799)
chr1 (20-221)||(40977504-40977709)
chr1 (60-138)||(21364877-21364955)
chr1 (74-143)||(15912407-15912476)
chr1 (107-188)||(24321335-24321419)
chr1 (20-136)||(50972648-50972765)
chr1 (152-188)||(7568638-7568674)
chr1 (107-143)||(23330556-23330592)
[»] chr5 (29 HSPs)
chr5 (65-209)||(27579491-27579639)
chr5 (107-218)||(6996025-6996138)
chr5 (35-216)||(5947587-5947767)
chr5 (43-218)||(34112006-34112180)
chr5 (62-218)||(978121-978281)
chr5 (62-218)||(14634215-14634375)
chr5 (62-218)||(33387264-33387423)
chr5 (107-218)||(30354978-30355092)
chr5 (60-188)||(9050632-9050764)
chr5 (50-143)||(27109810-27109904)
chr5 (50-143)||(40156320-40156414)
chr5 (72-218)||(8086098-8086248)
chr5 (62-188)||(9502685-9502815)
chr5 (49-218)||(12456685-12456858)
chr5 (72-188)||(3422278-3422398)
chr5 (59-218)||(11251158-11251321)
chr5 (59-185)||(7224242-7224372)
chr5 (73-199)||(18998750-18998879)
chr5 (20-142)||(18094097-18094220)
chr5 (60-189)||(33550864-33550995)
chr5 (20-141)||(7002524-7002648)
chr5 (59-143)||(33587524-33587609)
chr5 (107-143)||(35290823-35290859)
chr5 (63-188)||(12007691-12007820)
chr5 (109-188)||(17476951-17477030)
chr5 (62-143)||(3472335-3472417)
chr5 (107-193)||(32017282-32017367)
chr5 (20-142)||(18598654-18598778)
chr5 (107-143)||(35641890-35641926)
[»] chr2 (24 HSPs)
chr2 (62-218)||(6223110-6223270)
chr2 (20-221)||(33228461-33228666)
chr2 (20-143)||(33607494-33607618)
chr2 (59-218)||(7799891-7800054)
chr2 (59-218)||(2183015-2183175)
chr2 (20-193)||(9172162-9172339)
chr2 (62-218)||(5405040-5405200)
chr2 (62-218)||(7608093-7608253)
chr2 (62-218)||(8042080-8042240)
chr2 (62-218)||(19141124-19141284)
chr2 (50-143)||(36719370-36719464)
chr2 (62-218)||(44365201-44365361)
chr2 (60-217)||(13125201-13125362)
chr2 (50-188)||(44644944-44645087)
chr2 (60-179)||(34248558-34248677)
chr2 (118-193)||(42133821-42133896)
chr2 (119-222)||(24252000-24252105)
chr2 (20-216)||(36177596-36177794)
chr2 (62-188)||(11841651-11841781)
chr2 (50-144)||(32887027-32887122)
chr2 (107-193)||(38292021-38292110)
chr2 (57-188)||(44563051-44563185)
chr2 (152-218)||(31610805-31610871)
chr2 (107-193)||(9006887-9006977)
[»] scaffold0022 (1 HSPs)
scaffold0022 (59-143)||(100702-100787)
[»] scaffold0003 (1 HSPs)
scaffold0003 (50-218)||(161883-162055)
[»] scaffold0595 (1 HSPs)
scaffold0595 (25-218)||(3992-4189)
[»] scaffold0056 (1 HSPs)
scaffold0056 (59-218)||(71005-71167)
[»] scaffold0295 (1 HSPs)
scaffold0295 (107-218)||(13821-13935)
[»] scaffold0009 (1 HSPs)
scaffold0009 (74-143)||(53490-53560)


Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 337
Target Start/End: Original strand, 32779946 - 32780269
Alignment:
Q  18 ctaaatacatgtcgcattcaactatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaatttaatc 117  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |    
T  32779946 ctaaatacatgtcgcattcaattatttcacgcatgtcactatacaattttgatcgttaatatttttaattgtctatagtaaaacattataaaatttaacc 32780045  T
Q  118 ttttgaaaatatttatcgagacaaattaagcattttacatactaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatag 217  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  32780046 ttttgaaaatatttatcgagataaattgagcatcttacatactaacatttatatttatatactagttaaaatatatagttaaggtaagtcatgtgaatag 32780145  T
Q  218 taca---ttnnnnnnnnntacacg-ttttttggaatagagggagtaattggttggtgttagtagtgcaatgtcaaatattatgccggaacatgcttaatc 313  Q
    |  |   ||         |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  32780146 tgaatatttaaaaaaaaatacacgtttttttggaatagagggagtaattggttggtgttagcagtgcaatgtcaaatattatgccggaacatgcttaatc 32780245  T
Q  314 ttttagtggctgatgttcttctca 337  Q
    ||||||||||||||||| ||||||    
T  32780246 ttttagtggctgatgtttttctca 32780269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 20 - 218
Target Start/End: Complemental strand, 14237526 - 14237324
Alignment:
Q  20 aaatacatgtcgcattcaactatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcat-aaaatttaatct 118  Q
    |||||||||||  | ||||| | |||||  |||||| | ||||||||||| ||||||||| ||||||| |||| ||||||| || || |||||||||| |    
T  14237526 aaatacatgtccaagtcaaccacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaaagtaaaaaattataaaaatttaatat 14237427  T
Q  119 tttgaaaatatttatcgagacaaatta---agcattttacatactaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaat 215  Q
    ||||||||||||| ||||||||||| |   | ||| |||||| |||| |||| |||||||| | ||||||||| |||| || ||  ||||||| ||||||    
T  14237426 tttgaaaatatttgtcgagacaaatcaaacaacatcttacatgctaatatttgtatttatacattagttaaaaaatatggtcaaagtaagtcaagtgaat 14237327  T
Q  216 agt 218  Q
    |||    
T  14237326 agt 14237324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 59 - 218
Target Start/End: Complemental strand, 32998656 - 32998494
Alignment:
Q  59 cacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaatttaatcttttgaaaatatttatcgagacaaatta---agcattttac 155  Q
    ||||||||||| ||||||||| ||||||| || | ||||||| || |||||||||||| |||||||||||||| ||||||||||| |   | ||| ||||    
T  32998656 cacaattttgaccgttaatatctttaattatccaaagtaaaaaattataaaatttaatattttgaaaatatttgtcgagacaaatcaaacaacatcttac 32998557  T
Q  156 atactaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
    || |||| |||| |||||||| | ||||||||| |||| || ||  ||||||| |||||||||    
T  32998556 atgctaatatttgtatttatacattagttaaaaaatatggtcaaagtaagtcaagtgaatagt 32998494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 188
Target Start/End: Original strand, 2766064 - 2766236
Alignment:
Q  20 aaatacatgtcgcattcaactatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcat-aaaatttaatct 118  Q
    |||||||||||  | ||| | ||||||| ||||||| | ||||||||| | ||||||||| ||||||| |||| ||||||| || || |||||||||| |    
T  2766064 aaatacatgtccaaatcagccatttcacacatgtcaatgcacaattttaaccgttaatatatttaattatctaaagtaaaaaattataaaaatttaatat 2766163  T
Q  119 tttgaaaatatttatcgagacaaatta---agcattttacatactaacatttatatttatatactagttaaaa 188  Q
    ||||||||||||| ||||||||||| |   | ||| |||||| |||| ||||||||||||| | |||||||||    
T  2766164 tttgaaaatatttttcgagacaaatcaaacaacatcttacatgctaatatttatatttatacattagttaaaa 2766236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 59 - 218
Target Start/End: Complemental strand, 18044632 - 18044469
Alignment:
Q  59 cacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcatttta 154  Q
    ||||||||||| ||||||||| ||||||| |||| ||||||| || |||||| |||||| |||||||||||||| ||||||||||| |   | ||| |||    
T  18044632 cacaattttgaccgttaatatatttaattatctaaagtaaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaatcaaacaacatctta 18044533  T
Q  155 catactaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
    ||| |||| |||| |||||||| | ||||||||| |||| || ||  ||||||| |||||||||    
T  18044532 catgctaatatttgtatttatacattagttaaaaaatatggtcaaagtaagtcaagtgaatagt 18044469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 218
Target Start/End: Complemental strand, 132263 - 132061
Alignment:
Q  20 aaatacatgtcgcattcaactatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcat-aaaatttaatct 118  Q
    |||||||||||  | ||||||| ||||| |||| || |  |||||||||| ||||||||| ||||||| |||| ||||||| || || |||||||||| |    
T  132263 aaatacatgtccaagtcaactacttcacacatgccaatgtacaattttgaccgttaatatctttaattatctaaagtaaaaaattataaaaatttaatat 132164  T
Q  119 tttgaaaatatttatcgagacaaatta---agcattttacatactaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaat 215  Q
    ||||||||||||| ||||||||||| |   | ||| |||||| |||| |||| |||||||| | ||||||||| ||||  | ||  ||||||| ||||||    
T  132163 tttgaaaatatttgtcgagacaaatcaaacaacatcttacatgctaatatttgtatttatacattagttaaaaaatatgatcaaagtaagtcaagtgaat 132064  T
Q  216 agt 218  Q
    |||    
T  132063 agt 132061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 57 - 218
Target Start/End: Complemental strand, 41264019 - 41263854
Alignment:
Q  57 tacacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcattt 152  Q
    |||| |||||||| ||||||||| ||||||| |||| ||||||| || |||||| |||||| |||||||||||||| ||||||||||| |   | ||| |    
T  41264019 tacataattttgaccgttaatatctttaattatctaaagtaaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaatcaaacaacatct 41263920  T
Q  153 tacatactaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
    ||||| |||| |||| |||||||| | ||||||||| |||| || ||  ||||||| |||||||||    
T  41263919 tacatgctaatatttgtatttatacattagttaaaaaatatggtcaaagtaagtcaagtgaatagt 41263854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 20 - 218
Target Start/End: Complemental strand, 623422 - 623220
Alignment:
Q  20 aaatacatgtcgcattcaactatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatct 118  Q
    |||||||||||  | ||||| | |||||  |||||| | || ||||||||  |||||||| ||||||| |||| ||||||| || |||||| |||||| |    
T  623422 aaatacatgtccaagtcaaccacttcacatatgtcaatgcataattttgactgttaatatctttaattttctaaagtaaaaaattataaaaatttaatat 623323  T
Q  119 tttgaaaatatttatcgagacaaatta---agcattttacatactaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaat 215  Q
    ||||||||||||| ||||||||||| |   | ||| |||||| |||| |||| |||||||||| |||||||||  ||| || ||  ||||||| ||||||    
T  623322 tttgaaaatatttgtcgagacaaatcaaacaacatcttacatgctaatatttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaat 623223  T
Q  216 agt 218  Q
    |||    
T  623222 agt 623220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 218
Target Start/End: Complemental strand, 5878533 - 5878360
Alignment:
Q  49 catgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcat-aaaatttaatcttttgaaaatatttatcgagacaaattaag 147  Q
    ||||||| | |||||||||||  |||||||| ||||||| |||| ||||||| || || |||||||||| |||||||||||||| | ||||||||| ||     
T  5878533 catgtcaatgcacaattttgactgttaatatatttaattatctaaagtaaaaaattataaaaatttaatattttgaaaatatttgtggagacaaatcaaa 5878434  T
Q  148 c---attttacatactaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
    |   || |||||| |||| |||| |||||||| | ||||||||| |||| || ||  ||||||| |||||||||    
T  5878433 cgatatcttacatgctaatatttgtatttatacattagttaaaaaatatggtcaaagtaagtcaagtgaatagt 5878360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 62 - 218
Target Start/End: Complemental strand, 616987 - 616827
Alignment:
Q  62 aattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcattttacat 157  Q
    ||||||||  |||||||| ||||||| |||| ||||||| || |||||| |||||| |||||||||||||| ||||||||||| |   | ||| ||||||    
T  616987 aattttgacagttaatatctttaattatctaaagtaaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaatcaaacaacatcttacat 616888  T
Q  158 actaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
     |||| |||| |||||||||| |||||||||  ||| || ||  ||||||| |||||||||    
T  616887 gctaatatttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagt 616827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 57 - 216
Target Start/End: Complemental strand, 36919831 - 36919669
Alignment:
Q  57 tacacaattttgatcgttaatatttttaattgtctatagtaaaacatcat-aaaatttaatcttttgaaaatatttatcgagacaaatt---aagcattt 152  Q
    |||||| ||||||||| |||||| ||||||| |||||||||||| || || |||||| ||| ||||||||||||||||| | | |||||    | |||||    
T  36919831 tacacacttttgatcgctaatatctttaattatctatagtaaaaaattataaaaattgaatattttgaaaatatttatccaaataaattgaacaacattt 36919732  T
Q  153 tacatactaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaata 216  Q
    |  ||||||| ||||||||||||||| || |||||| |||| ||||| |||||| || ||||||    
T  36919731 tcaatactaatatttatatttatatattaattaaaa-atatggttaaaataagttatatgaata 36919669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 59 - 218
Target Start/End: Original strand, 42587303 - 42587466
Alignment:
Q  59 cacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcatttta 154  Q
    ||||||||| | ||||||||| ||||||| |||| ||||||| || |||||| |||||| |||||||||||||| ||||||||||| |   | ||| |||    
T  42587303 cacaatttttaccgttaatatctttaattatctaaagtaaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaatcaaacaacatctta 42587402  T
Q  155 catactaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
    ||| |||| |||| |||||||| | |||||||||  ||| || ||  ||||||| |||||||||    
T  42587403 catgctaatatttgtatttatacattagttaaaaagtatggtcaaagtaagtcaagtgaatagt 42587466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 40 - 193
Target Start/End: Complemental strand, 18090553 - 18090397
Alignment:
Q  40 tatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaattt-aatcttttgaaaatatttatcgaga 138  Q
    |||||||| ||||||| | ||||| |||||||||| |||| ||||||| | || ||| ||| || ||||||||| ||| |||| ||||||||||||||||    
T  18090553 tatttcacacatgtcaatgcacaactttgatcgttgatatctttaattatttaaagtgaaa-attataaaattttaatattttaaaaatatttatcgaga 18090455  T
Q  139 caaat---taagcattttacatactaacatttatatttatatactagttaaaatatat 193  Q
    |||||     | ||| ||| || |||||||||||||||||||| ||||||||| ||||    
T  18090454 caaatcgaacaacatcttatatgctaacatttatatttatatattagttaaaaaatat 18090397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 73 - 218
Target Start/End: Complemental strand, 40494577 - 40494428
Alignment:
Q  73 ttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcattttacatactaacattta 168  Q
    ||||||| ||||||| |||| ||||||| || |||||| |||||| |||||||||||||| ||||||||||| |   | ||| |||||| |||| ||||     
T  40494577 ttaatatctttaattttctaaagtaaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaatcaaacaacatcttacatgctaatatttg 40494478  T
Q  169 tatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
    |||||||||| |||||||||  ||| || ||  ||||||| |||||||||    
T  40494477 tatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagt 40494428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 143
Target Start/End: Original strand, 22489320 - 22489413
Alignment:
Q  50 atgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaat 143  Q
    |||||| | ||||||||||||||||||||| ||||||| |||| | ||||| || |||||| |||||| |||||||||||||| |||||||||||    
T  22489320 atgtcaatgcacaattttgatcgttaatatctttaattatctaaaataaaa-attataaaaatttaatattttgaaaatatttgtcgagacaaat 22489413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 218
Target Start/End: Original strand, 33700089 - 33700291
Alignment:
Q  20 aaatacatgtcgcattcaactatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcat-aaaatttaatct 118  Q
    |||||||||||||| ||||| | | ||| |||| || ||||||| ||||| | ||||||| ||||||| | |||| ||||| || || ||||||| || |    
T  33700089 aaatacatgtcgcagtcaaccactgcacacatgccaatacacaactttgaccattaatatctttaattatatataataaaaaattataaaaatttgatat 33700188  T
Q  119 tttgaaaatatttatcgagacaaatta---agcattttacatactaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaat 215  Q
    ||||||||| || |  ||||||||| |   | ||| |||| ||||||||||| |||||||||| ||||||||| |||| || ||  ||||  ||||||||    
T  33700189 tttgaaaatgttcactgagacaaatcaaacaacatcttacttactaacatttgtatttatatattagttaaaaaatatggtcaaagtaagctatgtgaat 33700288  T
Q  216 agt 218  Q
    |||    
T  33700289 agt 33700291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 62 - 188
Target Start/End: Original strand, 36641916 - 36642046
Alignment:
Q  62 aattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcattttacat 157  Q
    ||||||||  |||||||| ||||||| |||| ||||||| || |||||| |||||| |||||||||||||| ||||||||||| |   | ||| ||||||    
T  36641916 aattttgactgttaatatctttaattttctaaagtaaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaatcaaacaacatcttacat 36642015  T
Q  158 actaacatttatatttatatactagttaaaa 188  Q
     |||| |||| ||||||||||  ||||||||    
T  36642016 gctaatatttgtatttatatataagttaaaa 36642046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 81 - 214
Target Start/End: Original strand, 3370333 - 3370470
Alignment:
Q  81 tttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaattaagcatt---ttacatactaacatttatatttata 176  Q
    ||||||| |||| ||||||| || |||||| |||||| |||||||||||||| |||| |||||| || || |   ||||||| |||||||| ||||||||    
T  3370333 tttaattatctaaagtaaaaaattataaaaatttaatattttgaaaatatttgtcgaaacaaatcaaacaatatcttacatattaacatttgtatttata 3370432  T
Q  177 tactagttaaaatatatagttaagataagtcatgtgaa 214  Q
    || || |||||| |||| || ||  |||||||||||||    
T  3370433 tattaattaaaaaatatggtcaaagtaagtcatgtgaa 3370470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 24524331 - 24524209
Alignment:
Q  20 aaatacatgtcgcattcaactatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatct 118  Q
    |||||||||||  | ||||| |||||||  |||||| | |||||||||||  |||||||| || |||| |||| |||||||  | |||||| |||||| |    
T  24524331 aaatacatgtccaagtcaaccatttcacatatgtcaatgcacaattttgacggttaatatcttaaattatctaaagtaaaa--ttataaaaatttaatat 24524234  T
Q  119 tttgaaaatatttatcgagacaaat 143  Q
    ||||||||||||| |||||||||||    
T  24524233 tttgaaaatatttgtcgagacaaat 24524209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 143
Target Start/End: Complemental strand, 36167915 - 36167830
Alignment:
Q  59 cacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaat 143  Q
    ||||||||||| | ||||||| ||||||| |||| ||||||| || |||||| |||||| || ||||||||||| |||||||||||    
T  36167915 cacaattttgacctttaatatctttaattatctaaagtaaaaaattataaaaatttaatattctgaaaatatttgtcgagacaaat 36167830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 143
Target Start/End: Complemental strand, 38957377 - 38957292
Alignment:
Q  59 cacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaat 143  Q
    ||||||||||| | ||||||| ||||||| |||| ||||||| || |||||| |||||| |||| ||||||||| |||||||||||    
T  38957377 cacaattttgacccttaatatctttaattatctaaagtaaaaaattataaaaatttaatatttttaaaatatttgtcgagacaaat 38957292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 60 - 218
Target Start/End: Complemental strand, 11637988 - 11637826
Alignment:
Q  60 acaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaattaagca---ttttac 155  Q
    |||||||||| |||||||||  |||||| |||| ||||||| || |||||| |||||| |||| ||||||||| |||||| |||| || ||   | ||||    
T  11637988 acaattttgaccgttaatatcattaattatctaaagtaaaaaattataaaaatttaatattttaaaaatatttgtcgagataaatcaaacaacatcttac 11637889  T
Q  156 atactaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
    || |||| | || |||||||| |||||||||||  ||  || || |||||||| |||||||||    
T  11637888 atgctaatacttgtatttatacactagttaaaaagtacggtcaaaataagtcaagtgaatagt 11637826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 143
Target Start/End: Complemental strand, 18021117 - 18020991
Alignment:
Q  18 ctaaatacatgtcgcattcaactatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaat 116  Q
    |||||||||||| ||| ||||| | | ||| |||| || ||||||| ||||| | ||||||| ||||||| | |||| ||||| |  |||||| ||| ||    
T  18021117 ctaaatacatgttgcagtcaaccactgcacacatggcaatacacaactttgaccattaatatctttaattatatataataaaaaaatataaaaatttgat 18021018  T
Q  117 cttttgaaaatatttatcgagacaaat 143  Q
     ||||||||||||| ||||||||||||    
T  18021017 attttgaaaatattcatcgagacaaat 18020991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 143
Target Start/End: Complemental strand, 8394540 - 8394468
Alignment:
Q  72 gttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaat 143  Q
    |||||||| ||||||| |||| ||||||| || |||||| |||||| |||| ||||||||| |||||||||||    
T  8394540 gttaatatctttaattatctaaagtaaaaaattataaaaatttaatattttaaaaatatttgtcgagacaaat 8394468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 218
Target Start/End: Original strand, 13216825 - 13216939
Alignment:
Q  107 aaaatttaatcttttgaaaatatttatcgagacaaatta---agcattttacatactaacatttatatttatatactagttaaaatatatagttaagata 203  Q
    |||||||||| |||||||||||||| ||||||||||| |   | ||| || ||| |||| ||||||||||||| | |||||||||  ||| || ||  ||    
T  13216825 aaaatttaatattttgaaaatatttgtcgagacaaatcaaacaacatctttcatgctaatatttatatttatacattagttaaaaagtatggtcaaagta 13216924  T
Q  204 agtcatgtgaatagt 218  Q
    ||||| |||||||||    
T  13216925 agtcaagtgaatagt 13216939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 57 - 143
Target Start/End: Original strand, 40204775 - 40204862
Alignment:
Q  57 tacacaattttgatcgttaatatttttaattgtctatagtaaaacatcat-aaaatttaatcttttgaaaatatttatcgagacaaat 143  Q
    ||||||||||||| | ||||| ||| ||||| |||||| ||||| || || ||||||| || ||||||||||||| ||||||| ||||    
T  40204775 tacacaattttgaccattaatgtttgtaattatctataataaaaaattataaaaatttgatattttgaaaatattcatcgagataaat 40204862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 143
Target Start/End: Original strand, 38958807 - 38958901
Alignment:
Q  50 atgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaat 143  Q
    |||||| | |||||||||||   ||||||| ||||||| |||| |||||||  | |||||| |||||| |||| ||||||||| |||||||||||    
T  38958807 atgtcaatgcacaattttgactattaatatctttaattatctaaagtaaaaagttataaaaatttaatattttaaaaatatttgtcgagacaaat 38958901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 188
Target Start/End: Original strand, 3100580 - 3100683
Alignment:
Q  89 tctatagtaaaacatcataaaattt-aatcttttgaaaatatttatcgagacaaat---taagcattttacatactaacatttatatttatatactagtt 184  Q
    |||| ||||||| || ||||||||| ||| |||||||||||||| |||||||||||   | | ||| |||||| |||| |||| |||||||| | |||||    
T  3100580 tctaaagtaaaaaattataaaattttaatattttgaaaatatttgtcgagacaaatcaatcaacatcttacatgctaatatttgtatttatacattagtt 3100679  T
Q  185 aaaa 188  Q
    ||||    
T  3100680 aaaa 3100683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 188
Target Start/End: Complemental strand, 18035304 - 18035174
Alignment:
Q  60 acaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaatttaatcttttgaaaatatttatcgagacaaatta---agcattttaca 156  Q
    |||| ||||| | ||||||| ||||||| | |||| ||||| || | |||||| | | ||||||||||||| |||||||||||| |   | ||| |||||    
T  18035304 acaactttgaccattaatatctttaattatatataataaaaaataaaaaaattga-tattttgaaaatattaatcgagacaaatcaaacaacatcttaca 18035206  T
Q  157 tactaacatttatatttatatactagttaaaa 188  Q
    | |||||||||  ||||||||| |||||||||    
T  18035205 tgctaacatttgcatttatatattagttaaaa 18035174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 143
Target Start/End: Complemental strand, 148184 - 148148
Alignment:
Q  107 aaaatttaatcttttgaaaatatttatcgagacaaat 143  Q
    |||||||||| |||||||||||||| |||||||||||    
T  148184 aaaatttaatattttgaaaatatttgtcgagacaaat 148148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 146
Target Start/End: Complemental strand, 35403723 - 35403635
Alignment:
Q  60 acaattttgatcgttaatatttttaattgtctatagtaaaaca-tcataaaa-tttaatcttttgaaaatatttatcgagacaaattaa 146  Q
    |||||||||| | ||||||| ||||||| |||| ||||||| | | |||||| |||||| |||  ||||||||| ||||||||||||||    
T  35403723 acaattttgaccattaatatctttaattatctaaagtaaaaaaattataaaaatttaatatttaaaaaatatttgtcgagacaaattaa 35403635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 20 - 188
Target Start/End: Complemental strand, 12226221 - 12226049
Alignment:
Q  20 aaatacatgtcgcattcaactatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcat-aaaatttaatct 118  Q
    |||||||||||  | ||||| | ||||| |||| || ||||||||||||||||||||||| ||||||| |||| ||||||| || || |||||||||| |    
T  12226221 aaatacatgtccaagtcaaccacttcacacatgccaatacacaattttgatcgttaatatctttaattatctaaagtaaaaaattataaaaatttaatat 12226122  T
Q  119 tttgaaaatatttatcgagacaaattaagc---attttacatactaacatttatatttatatactagttaaaa 188  Q
    ||||||||||||||||||||||||| || |   || |||||| |||| ||||||||||||| | |||||||||    
T  12226121 tttgaaaatatttatcgagacaaatcaaacaatatcttacatgctaatatttatatttatacattagttaaaa 12226049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 59 - 218
Target Start/End: Original strand, 18668743 - 18668906
Alignment:
Q  59 cacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcatttta 154  Q
    ||||||||||| ||||||||| ||||||| |||| ||||||| || |||||| |||||| |||||||||||||| ||||||||||| |   | ||| |||    
T  18668743 cacaattttgaccgttaatatctttaattatctaaagtaaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaatcaaacaacatctta 18668842  T
Q  155 catactaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
    ||| |||| |||| |||||||| | ||||||||| |||| || ||   |||||| |||||||||    
T  18668843 catgctaatatttgtatttatacattagttaaaaaatatggtcaaagcaagtcaagtgaatagt 18668906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 20 - 184
Target Start/End: Original strand, 21540645 - 21540813
Alignment:
Q  20 aaatacatgtcgcattcaactatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatct 118  Q
    |||||||||||  | ||||| | ||||| |||| || | ||||||||||| ||||||||| ||||||| ||||  |||||| || |||||| |||||| |    
T  21540645 aaatacatgtccaagtcaaccacttcacacatgccaatgcacaattttgaccgttaatatctttaattatctaatgtaaaaaattataaaaatttaatat 21540744  T
Q  119 tttgaaaatatttatcgagacaaatta---agcattttacatactaacatttatatttatatactagtt 184  Q
    ||||||||||||| ||||||||||| |   | ||||||||||  ||| |||| |||||||| |||||||    
T  21540745 tttgaaaatatttgtcgagacaaatcaaataacattttacattataatatttgtatttataaactagtt 21540813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 62 - 218
Target Start/End: Complemental strand, 22054976 - 22054816
Alignment:
Q  62 aattttgatcgttaatatttttaattgtctatagtaaaacatcat-aaaatttaatcttttgaaaatatttatcgagacaaatta---agcattttacat 157  Q
    |||||||| ||||||||| ||||||| |||| ||||||| || || |||||||||| |||||||||||||| ||||||||||| |   | ||| ||||||    
T  22054976 aattttgaccgttaatatctttaattatctaaagtaaaaaattatgaaaatttaatattttgaaaatatttgtcgagacaaatcaaacaacatcttacat 22054877  T
Q  158 actaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
     |||| |||| |||||||| | |||||||||  ||| || ||  ||||||| |||||||||    
T  22054876 gctaatatttgtatttatacattagttaaaaagtatggtcaaagtaagtcaagtgaatagt 22054816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 62 - 218
Target Start/End: Original strand, 32414737 - 32414897
Alignment:
Q  62 aattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcattttacat 157  Q
    ||||||||  |||||||| ||||||| |||| ||||||| || |||||| |||||| |||||||||||||| ||||||||||| |   | ||| ||||||    
T  32414737 aattttgactgttaatatctttaattttctaaagtaaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaatcaaacaacatcttacat 32414836  T
Q  158 actaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
     |||| |||| |||||||||| |||||||||  ||| || ||  ||||||| |||||||||    
T  32414837 gctaatatttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagt 32414897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 59 - 143
Target Start/End: Complemental strand, 32672023 - 32671938
Alignment:
Q  59 cacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaat 143  Q
    ||||||||||||||||||||| ||||||| |||  ||||||| || |||||| |||||| |||||||||||||| |||||||||||    
T  32672023 cacaattttgatcgttaatatctttaattatcttaagtaaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaat 32671938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 62 - 188
Target Start/End: Original strand, 19088016 - 19088146
Alignment:
Q  62 aattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcattttacat 157  Q
    ||||||||  |||||||| ||||||| |||| ||||||| || |||||| |||||| |||||||||||||| ||||||||||| |   | ||| ||||||    
T  19088016 aattttgactgttaatatctttaattttctaaagtaaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaatcaaacaacatcttacat 19088115  T
Q  158 actaacatttatatttatatactagttaaaa 188  Q
     |||| |||| |||||||||| |||||||||    
T  19088116 gctaatatttgtatttatatattagttaaaa 19088146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 60 - 143
Target Start/End: Original strand, 3989321 - 3989404
Alignment:
Q  60 acaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaatttaatcttttgaaaatatttatcgagacaaat 143  Q
    |||||||||||||||||||| ||||||| |||| ||||||| ||   |||||||||| |||| ||||||||| |||||||||||    
T  3989321 acaattttgatcgttaatatctttaattatctacagtaaaaaatataaaaatttaatattttaaaaatatttgtcgagacaaat 3989404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 72 - 188
Target Start/End: Complemental strand, 6563420 - 6563300
Alignment:
Q  72 gttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcattttacatactaacattt 167  Q
    |||||||| ||||||| |||| ||||||| || |||||| |||||| |||||||||||||| ||||||||||| |   | ||| |||||| |||| ||||    
T  6563420 gttaatatctttaattttctaaagtaaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaatcaaacaacatcttacatgctaatattt 6563321  T
Q  168 atatttatatactagttaaaa 188  Q
     |||||||||| |||||||||    
T  6563320 gtatttatatattagttaaaa 6563300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 218
Target Start/End: Original strand, 24623999 - 24624159
Alignment:
Q  62 aattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcattttacat 157  Q
    ||||||||  |||||||| ||||||| |||| ||||||| || |||||| |||||| ||||||||||||||  |||||||||| |   | ||| ||||||    
T  24623999 aattttgactgttaatatctttaattttctaaagtaaaaaattataaaaatttaatattttgaaaatatttgccgagacaaatcaaacaacatcttacat 24624098  T
Q  158 actaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
     |||| |||| |||||||||| |||||||||  ||| || ||  ||||||| |||||||||    
T  24624099 gctaatatttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagt 24624159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 216
Target Start/End: Original strand, 24955412 - 24955612
Alignment:
Q  20 aaatacatgtcgcattcaactatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatct 118  Q
    |||||||||||  | ||||| |||||||  || ||| | |||||||||||   ||||||| ||||||| |||| ||||||| || |||||| |||||| |    
T  24955412 aaatacatgtccaagtcaacaatttcacatatatcaatgcacaattttgactattaatatctttaattatctaaagtaaaaaattataaaaatttaatat 24955511  T
Q  119 tttgaaaatatttatcgagacaaatta---agcattttacatactaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaat 215  Q
    ||||||||||||| ||||||||||| |   | ||| |||||| |||| |||| |||||||  | ||||||||| ||||  | || |||||||| ||||||    
T  24955512 tttgaaaatatttgtcgagacaaatcaaacaacatcttacatgctaatatttgtatttattcattagttaaaaaatatgatcaaaataagtcaagtgaat 24955611  T
Q  216 a 216  Q
    |    
T  24955612 a 24955612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 143
Target Start/End: Original strand, 16192943 - 16193022
Alignment:
Q  65 tttgatcgttaatatttttaattgtctatagtaaaacatcat-aaaatttaatcttttgaaaatatttatcgagacaaat 143  Q
    ||||||||||||||| ||||||| |||| ||||||| || || |||||||||| |||||||||||||| | |||||||||    
T  16192943 tttgatcgttaatatctttaattatctaaagtaaaaaattataaaaatttaatattttgaaaatatttgttgagacaaat 16193022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 143
Target Start/End: Complemental strand, 10520675 - 10520590
Alignment:
Q  59 cacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaatt-taatcttttgaaaatatttatcgagacaaat 143  Q
    |||||||| || ||||||||| ||||||| |||| ||||||| || |||||| | |||| |||| |||||||||||||||||||||    
T  10520675 cacaatttggaccgttaatatctttaattatctaaagtaaaaaattataaaaatgtaatattttaaaaatatttatcgagacaaat 10520590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 221
Target Start/End: Complemental strand, 28477969 - 28477794
Alignment:
Q  50 atgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta--- 145  Q
    |||||| | ||||| ||||| ||||||||| ||||||| |||| ||||||| ||  ||||| |||||| ||||||| ||||||||||| | |||| |       
T  28477969 atgtcaatgcacaactttgaccgttaatatctttaattatctaaagtaaaaaattgtaaaaatttaatattttgaatatatttatcgatataaatcaaac 28477870  T
Q  146 agcattttacatactaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagtaca 221  Q
    | ||  |||||| |||| |||| |||||||||| |||||||||  ||| || ||   |||||||||||||||||||    
T  28477869 aacaacttacatgctaatatttgtatttatatattagttaaaaattatggtcaaagcaagtcatgtgaatagtaca 28477794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 62 - 188
Target Start/End: Complemental strand, 4148135 - 4148005
Alignment:
Q  62 aattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcattttacat 157  Q
    ||||||||| |||||||| ||||||| |||| ||||||| |  |||||| |||||| |||||||||||||| ||||| ||||| |   | ||| ||||||    
T  4148135 aattttgattgttaatatctttaattatctaaagtaaaaaagtataaaaatttaatattttgaaaatatttgtcgaggcaaatcaaacaacatcttacat 4148036  T
Q  158 actaacatttatatttatatactagttaaaa 188  Q
     |||| |||| |||||||| | |||||||||    
T  4148035 gctaatatttgtatttatacattagttaaaa 4148005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 60 - 143
Target Start/End: Original strand, 25475869 - 25475953
Alignment:
Q  60 acaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaat 143  Q
    ||||||||||  |||||||| ||||||| |||| ||||||| || | |||| |||||| |||||||||||||| |||||||||||    
T  25475869 acaattttgactgttaatatctttaattatctaaagtaaaaaattaaaaaaatttaatattttgaaaatatttgtcgagacaaat 25475953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 188
Target Start/End: Original strand, 20226353 - 20226486
Alignment:
Q  59 cacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaattaagca---tttta 154  Q
    ||||||||| | ||||||||| ||||||| | ||  |||||| || |||||| |||||| |||||||||||||| ||||||||||| || ||   | |||    
T  20226353 cacaatttttaccgttaatatctttaattatttaatgtaaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaatcaaacaacgtctta 20226452  T
Q  155 catactaacatttatatttatatactagttaaaa 188  Q
    ||| |||| |||| |||||||| | |||||||||    
T  20226453 catgctaatatttgtatttatacattagttaaaa 20226486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 188
Target Start/End: Original strand, 22120337 - 22120470
Alignment:
Q  59 cacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaattaagca---tttta 154  Q
    ||||||||| | ||||||||| ||||||| | ||  |||||| || |||||| |||||| |||||||||||||| ||||||||||| || ||   | |||    
T  22120337 cacaatttttaccgttaatatctttaattatttaatgtaaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaatcaaacaacgtctta 22120436  T
Q  155 catactaacatttatatttatatactagttaaaa 188  Q
    ||| |||| |||| |||||||| | |||||||||    
T  22120437 catgctaatatttgtatttatacattagttaaaa 22120470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 219
Target Start/End: Complemental strand, 29790422 - 29790249
Alignment:
Q  50 atgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta--- 145  Q
    |||||| | ||||| ||||| ||||||||| ||||||| |||| ||||||| ||  ||||| |||||| ||||||| ||||||||||| | |||| |       
T  29790422 atgtcaatgcacaactttgaccgttaatatctttaattatctaaagtaaaaaattgtaaaaatttaatattttgaatatatttatcgatataaatcaaac 29790323  T
Q  146 agcattttacatactaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagta 219  Q
    | ||  |||||| |||| |||| |||||||||| |||||||||  ||| ||  |  ||||||||||||||||||    
T  29790322 aacaacttacatgctaatatttgtatttatatattagttaaaaattatggtccaagtaagtcatgtgaatagta 29790249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 143
Target Start/End: Complemental strand, 1041040 - 1040946
Alignment:
Q  50 atgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaat 143  Q
    |||||| | ||||||||  | ||||||||| ||||||| |||| ||||||| || |||||| |||||| |||| ||||||||| |||||||||||    
T  1041040 atgtcaatgcacaatttcaaccgttaatatatttaattatctaaagtaaaaaattataaaaatttaatattttaaaaatatttgtcgagacaaat 1040946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 218
Target Start/End: Original strand, 10298590 - 10298791
Alignment:
Q  20 aaatacatgtcgcattcaactatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatct 118  Q
    |||||||||||||| ||||| | |  || |||| || ||||||| ||||| | |||||||||| |||| | |||| ||||| || |||||| ||| || |    
T  10298590 aaatacatgtcgcagtcaaccactgtacacatgccaatacacaactttgaccattaatatttt-aattatgtataataaaaaattataaaaatttgatat 10298688  T
Q  119 tttgaaaatatttatcgagacaaattaag---cattttacatactaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaat 215  Q
     |||||||||||  |||||| |||| ||    |||||||||| ||||||||| |||||||||| |||| |||| |||| || ||  ||||  ||||||||    
T  10298689 gttgaaaatattcctcgagaaaaatcaaaaaacattttacatgctaacatttgtatttatatattagtgaaaaaatatggtcaaattaagctatgtgaat 10298788  T
Q  216 agt 218  Q
    |||    
T  10298789 agt 10298791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 61 - 143
Target Start/End: Original strand, 17257708 - 17257791
Alignment:
Q  61 caattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaat 143  Q
    |||||||||  |||||||| ||||||| |||| | ||||| || |||||| |||||| |||||||||||||| || ||||||||    
T  17257708 caattttgactgttaatatctttaattatctaaaataaaaaattataaaaatttaatattttgaaaatatttgtctagacaaat 17257791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 221
Target Start/End: Complemental strand, 29694129 - 29693924
Alignment:
Q  20 aaatacatgtcgcattcaactatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatct 118  Q
    |||||||||||| | ||||  | |||||  |||||| | || || ||||| | ||||||| ||||||| |||| ||||||| ||  ||||| |||| | |    
T  29694129 aaatacatgtcgtagtcaatcacttcacatatgtcagtgcataactttgaccattaatatatttaattatctaaagtaaaaaattgtaaaaatttagtat 29694030  T
Q  119 tttgaaaatatttatcgagacaaattaagcatt---ttacatactaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaat 215  Q
    |||||| ||||||||||| |||||| |||||     |||||| |||  |||| |||||||||| |||||||||  ||| || ||   |||||||||||||    
T  29694029 tttgaatatatttatcgatacaaatcaagcaacaacttacatgctagtatttgtatttatatattagttaaaaattatggtcaaagcaagtcatgtgaat 29693930  T
Q  216 agtaca 221  Q
    ||||||    
T  29693929 agtaca 29693924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 143
Target Start/End: Complemental strand, 31869953 - 31869858
Alignment:
Q  49 catgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcat-aaaatttaatcttttgaaaatatttatcgagacaaat 143  Q
    ||||||| |||||||||||||   ||||||| ||||||| | |||| ||||| || || ||||||| || ||||||||||||| || |||||||||    
T  31869953 catgtcaatacacaattttgactattaatatctttaattatatataataaaaaattataaaaatttgatattttgaaaatattcattgagacaaat 31869858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 219
Target Start/End: Original strand, 19240701 - 19240811
Alignment:
Q  109 aatttaatcttttgaaaatatttatcgagacaaattaagcattttacatactaacatttatatttatatactagttaaaatatatagttaagataagtca 208  Q
    |||||||| || |||| ||||||| ||||| |||| ||  || |||| | | || |||| |||||||||| ||||||||| |||| || || |||||| |    
T  19240701 aatttaatattatgaatatatttaacgagataaatcaaatatcttacttgcaaatatttgtatttatatattagttaaaaaatatggtcaaaataagtta 19240800  T
Q  209 tgtgaatagta 219  Q
    |||||||||||    
T  19240801 tgtgaatagta 19240811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 143
Target Start/End: Original strand, 20437033 - 20437153
Alignment:
Q  20 aaatacatgtcgcattcaactatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaatttaatctt 119  Q
    |||||||||||  | ||||| | |||||  |||||| | || |||||| | ||||||||| ||||||| || | ||||||| ||   |||||||||| ||    
T  20437033 aaatacatgtccaagtcaaccacttcacatatgtcaatgcataattttaaccgttaatatctttaattatcaaaagtaaaaaat---aaaatttaatatt 20437129  T
Q  120 ttgaaaatatttatcgagacaaat 143  Q
    |||||||||||| ||||| |||||    
T  20437130 ttgaaaatatttgtcgaggcaaat 20437153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 218
Target Start/End: Original strand, 17213888 - 17214002
Alignment:
Q  107 aaaatttaatcttttgaaaatatttatcgagacaaatta---agcattttacatactaacatttatatttatatactagttaaaatatatagttaagata 203  Q
    |||||||||| |||||||||||||| | ||||||||| |   | ||| |||||| |||| |||| |||||||| | |||||||||  |||||| ||  ||    
T  17213888 aaaatttaatattttgaaaatatttgtggagacaaatcaaacaacatcttacatgctaatatttgtatttataaattagttaaaaagtatagtcaaagta 17213987  T
Q  204 agtcatgtgaatagt 218  Q
    |||||  ||||||||    
T  17213988 agtcaaatgaatagt 17214002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 21162930 - 21162986
Alignment:
Q  57 tacacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaattt 113  Q
    ||||||| ||||||||||||||| ||||||| | |||| ||||| || |||||||||    
T  21162930 tacacaactttgatcgttaatatatttaattatatataataaaaaattataaaattt 21162986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 46)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 20 - 216
Target Start/End: Complemental strand, 7169369 - 7169172
Alignment:
Q  20 aaatacatgtcgcattcaactatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatct 118  Q
    ||||| ||||| || ||||||||||||   |||||| | ||||||||||||||||||||| ||||||| |||| ||||||| || | |||| |||||| |    
T  7169369 aaatatatgtcacagtcaactatttcatatatgtcaatgcacaattttgatcgttaatatctttaattatctaaagtaaaaaattaaaaaaatttaatat 7169270  T
Q  119 tttgaaaatatttatcgagacaaattaagcattttacatactaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaata 216  Q
    | |||| || ||||||||| |||||||| ||| ||| ||  ||| |||| |||||||||| ||||||||| ||||||| ||  ||| |||||||||||    
T  7169269 tatgaatatctttatcgaggcaaattaaacatcttatatgttaatatttgtatttatatattagttaaaaaatatagtcaaagtaaatcatgtgaata 7169172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 20 - 218
Target Start/End: Complemental strand, 20885349 - 20885147
Alignment:
Q  20 aaatacatgtcgcattcaactatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcat-aaaatttaatct 118  Q
    |||||||||||  | ||||| | ||||| |||| || | ||||||||||| ||||||||| ||||||| |||| ||||||| || || |||||||||| |    
T  20885349 aaatacatgtccaagtcaaccacttcacacatgccaatgcacaattttgaccgttaatatctttaattatctaaagtaaaaaattataaaaatttaatat 20885250  T
Q  119 tttgaaaatatttatcgagacaaatta---agcattttacatactaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaat 215  Q
    ||||||||||||| ||||||||||| |   | ||| |||||| |||| |||| |||||||| | ||||||||| |||| || ||  ||||||| ||||||    
T  20885249 tttgaaaatatttgtcgagacaaatcaaacaacatcttacatgctaatatttgtatttatacattagttaaaaaatatggtcaaagtaagtcaagtgaat 20885150  T
Q  216 agt 218  Q
    |||    
T  20885149 agt 20885147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 50 - 194
Target Start/End: Original strand, 39278380 - 39278525
Alignment:
Q  50 atgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcat-aaaatttaatcttttgaaaatatttatcgagacaaattaagc 148  Q
    |||||| || |||||||| | ||||||||  ||||||| | || | ||||  ||||| |||||||||| |||| ||||||||||| || | ||||| | |    
T  39278380 atgtcattatacaattttaaccgttaataagtttaattatttagaataaacaatcattaaaatttaatattttcaaaatatttattgaaataaattgaac 39278479  T
Q  149 attttacatactaacatttatatttatatactagttaaaatatata 194  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||    
T  39278480 attttacatactaacatttatatttatatattagttaaaaaatata 39278525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 20 - 218
Target Start/End: Original strand, 39129942 - 39130144
Alignment:
Q  20 aaatacatgtcgcattcaactatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatct 118  Q
    |||||||||||  | ||||||| |||||  ||| || | ||| ||||||| ||||||||||||||||| | || ||||||| || |||||| |||||| |    
T  39129942 aaatacatgtcaaagtcaactacttcacatatgccaatgcacgattttgaccgttaatatttttaattatataaagtaaaaaattataaaaatttaatat 39130041  T
Q  119 tttgaaaatatttatcgagacaaatta---agcattttacatactaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaat 215  Q
    ||||||||||||| ||||||||||| |   | ||| |||||| |||| |||| |||||||| | ||||||||| |||| || ||   |||||| ||||||    
T  39130042 tttgaaaatatttgtcgagacaaatcaaacaacatcttacatgctaatatttgtatttatacattagttaaaaaatatggtcaaagaaagtcaagtgaat 39130141  T
Q  216 agt 218  Q
    |||    
T  39130142 agt 39130144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 20 - 218
Target Start/End: Original strand, 40089934 - 40090136
Alignment:
Q  20 aaatacatgtcgcattcaactatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcat-aaaatttaatct 118  Q
    |||||||||||  | |||||||||||||  ||| || | || ||||||||  |||||||| ||||||| |||| ||||||| || || |||||||||| |    
T  40089934 aaatacatgtccaagtcaactatttcacatatgccaatgcataattttgactgttaatatctttaattttctaaagtaaaaaattataaaaatttaatat 40090033  T
Q  119 tttgaaaatatttatcgagacaaatta---agcattttacatactaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaat 215  Q
    ||||||||||||| |||||| |||| |   | ||| |||||| |||| |||| |||||||||| |||||||||  ||| || ||  ||||||| ||||||    
T  40090034 tttgaaaatatttgtcgagataaatcaaacaacatcttacatgctaatatttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaat 40090133  T
Q  216 agt 218  Q
    |||    
T  40090134 agt 40090136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 59 - 216
Target Start/End: Complemental strand, 7439110 - 7438949
Alignment:
Q  59 cacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcatttta 154  Q
    |||||||||||  |||||||| ||||||| |||| ||||||| || |||||| |||||| |||||||||||||| ||||||||||| |   | ||| |||    
T  7439110 cacaattttgacagttaatatctttaattatctaaagtaaaaaatgataaaaatttaatattttgaaaatatttgtcgagacaaatcaaacaacatctta 7439011  T
Q  155 catactaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaata 216  Q
    ||| |||| |||| |||||||| | |||||||||  ||| || || |||||||| |||||||    
T  7439010 catgctaatatttgtatttatacattagttaaaaagtatggtcaaaataagtcaagtgaata 7438949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 59 - 188
Target Start/End: Complemental strand, 16778712 - 16778579
Alignment:
Q  59 cacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcatttta 154  Q
    ||||||||||| ||||||||| ||||||| |||| ||||||| || |||||| |||||| |||||||||||||| ||||||||||| |   | ||| |||    
T  16778712 cacaattttgaccgttaatatctttaattatctaaagtaaaatattataaaaatttaatattttgaaaatatttgtcgagacaaatcaaacaacatctta 16778613  T
Q  155 catactaacatttatatttatatactagttaaaa 188  Q
    ||| |||| |||| |||||||| | |||||||||    
T  16778612 catgctaatatttgtatttatacattagttaaaa 16778579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 59 - 188
Target Start/End: Original strand, 32431413 - 32431546
Alignment:
Q  59 cacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcatttta 154  Q
    ||||||||||| ||||||| | ||||||| ||||||| |||| || |||||| |||||  |||||||||||||||||||||||||| |   | ||| |||    
T  32431413 cacaattttgaccgttaatgtctttaattatctatagcaaaaaattataaaaatttaacattttgaaaatatttatcgagacaaatcaaacaacatctta 32431512  T
Q  155 catactaacatttatatttatatactagttaaaa 188  Q
    |||||||| |||| |||||||| | |||||||||    
T  32431513 catactaatatttgtatttatacattagttaaaa 32431546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 62 - 218
Target Start/End: Original strand, 28061573 - 28061733
Alignment:
Q  62 aattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcattttacat 157  Q
    ||||||||  |||||||| ||||||| |||| ||||||| || |||||| |||||| |||||||||||||| ||||||||||| |   | ||| ||||||    
T  28061573 aattttgactgttaatatatttaattttctaaagtaaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaatcaaacaacatcttacat 28061672  T
Q  158 actaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
     |||| |||| |||||||||| |||||||||  ||| || ||  ||||||| |||||||||    
T  28061673 gctaatatttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagt 28061733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 20 - 204
Target Start/End: Original strand, 28601489 - 28601673
Alignment:
Q  20 aaatacatgtcgcattcaactatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaat-ttaatct 118  Q
    |||||||||||||| ||||| |   ||| ||||||| ||||||| || |||| | ||||| ||||||||| |||| ||||  || ||||||  || || |    
T  28601489 aaatacatgtcgcagtcaacgacggcacacatgtcaatacacaactt-gatcat-aatatatttaattgtatataataaagaattataaaaaattgatat 28601586  T
Q  119 tttgaaaatatttatcgagacaaattaagcattttacatactaacatttatatttatat-actagttaaaatatatagttaagataa 204  Q
    ||| |||||||| |||||||||||| || |||||||||| ||||||||||||||||||| | || |||||| ||||||| |||||||    
T  28601587 tttaaaaatattcatcgagacaaatcaaacattttacatgctaacatttatatttatataattaattaaaaaatatagtcaagataa 28601673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 62 - 218
Target Start/End: Complemental strand, 36623512 - 36623352
Alignment:
Q  62 aattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcattttacat 157  Q
    ||||||||  |||||||| ||||||| |||| ||||||| || |||||| |||||| |||||||||||||| ||||||||||| |   | ||| ||||||    
T  36623512 aattttgactgttaatatctttaattttctaaagtaaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaatcaaacaacatcttacat 36623413  T
Q  158 actaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
     |||| |||| |||||||||| |||||||||  ||| || ||  ||||||| |||||||||    
T  36623412 gctaatatttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagt 36623352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 62 - 218
Target Start/End: Original strand, 38851905 - 38852065
Alignment:
Q  62 aattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaattaagc---attttacat 157  Q
    ||||||||  |||||||| ||||||| |||| ||||||| || |||||| |||||| |||||||||||||| ||||||||||| || |   || ||||||    
T  38851905 aattttgactgttaatatctttaattttctaaagtaaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaatcaaacaatatcttacat 38852004  T
Q  158 actaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
     |||| |||| |||||||||| |||||||||  ||| || ||  ||||||| |||||||||    
T  38852005 gctaatatttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagt 38852065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 62 - 218
Target Start/End: Complemental strand, 47156231 - 47156071
Alignment:
Q  62 aattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcattttacat 157  Q
    ||||||||  |||||||| ||||||| |||| ||||||| || |||||| |||||| |||||||||||||| ||||||||||| |   | ||| ||||||    
T  47156231 aattttgactgttaatatctttaattttctaaagtaaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaatcaaacaacatcttacat 47156132  T
Q  158 actaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
     |||| |||| |||||||||| |||||||||  ||| || ||  ||||||| |||||||||    
T  47156131 gctaatatttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagt 47156071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 59 - 143
Target Start/End: Original strand, 46321207 - 46321292
Alignment:
Q  59 cacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaat 143  Q
    ||||||||||| ||||||||| ||||||| |||| ||||||| || |||||| |||||| ||||||||||||||||| ||||||||    
T  46321207 cacaattttgaccgttaatatctttaattatctaaagtaaaaaattataaaaatttaatattttgaaaatatttatcaagacaaat 46321292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 62 - 188
Target Start/End: Complemental strand, 35117329 - 35117199
Alignment:
Q  62 aattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcattttacat 157  Q
    ||||||||  |||||||||||||||| |||| ||||||| || |||||| ||| || |||||||||||||| ||||||||||| |   | ||| ||||||    
T  35117329 aattttgactgttaatatttttaattatctaaagtaaaaaattataaaaattttatattttgaaaatatttgtcgagacaaatcaaacaacatcttacat 35117230  T
Q  158 actaacatttatatttatatactagttaaaa 188  Q
     |||| ||||||||||||| | |||||||||    
T  35117229 gctaatatttatatttatacattagttaaaa 35117199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 71 - 218
Target Start/End: Complemental strand, 36585303 - 36585153
Alignment:
Q  71 cgttaatatttttaattgtctatagtaaaacatcataaaatttaatcttttgaaaatatttatcgagacaaatta---agcattttacatactaacattt 167  Q
    ||||||||| ||||||| |||| ||||||| ||  ||||||||||| |||||||||||||| ||||||||||| |   | ||| |||||| |||| ||||    
T  36585303 cgttaatatctttaattatctaaagtaaaaaattttaaaatttaatattttgaaaatatttgtcgagacaaatcaaacaacatcttacatgctaatattt 36585204  T
Q  168 atatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
     |||||||| | ||||| |||  ||| || || |||||||| |||||||||    
T  36585203 gtatttatacattagtttaaaagtatggtaaaaataagtcaagtgaatagt 36585153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 62 - 188
Target Start/End: Complemental strand, 41898192 - 41898062
Alignment:
Q  62 aattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcattttacat 157  Q
    ||||||||  |||||||| ||||||| |||| ||||||| || |||||| |||||| |||||||||||||| ||||||||||| |   | ||| ||||||    
T  41898192 aattttgactgttaatatctttaattttctaaagtaaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaatgaaacaacatcttacat 41898093  T
Q  158 actaacatttatatttatatactagttaaaa 188  Q
     |||| |||| |||||||||| |||||||||    
T  41898092 gctaatatttgtatttatatattagttaaaa 41898062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 62 - 188
Target Start/End: Complemental strand, 48602640 - 48602510
Alignment:
Q  62 aattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcattttacat 157  Q
    ||||||||  |||||||| ||||||| |||| ||||||| || |||||| |||||| |||||||||||||| ||||||||||| |   | ||| ||||||    
T  48602640 aattttgactgttaatatctttaattttctaaagtaaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaatcaaacaacatcttacat 48602541  T
Q  158 actaacatttatatttatatactagttaaaa 188  Q
     |||| |||| |||||||||| |||||||||    
T  48602540 gctaatatttgtatttatatattagttaaaa 48602510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 43 - 218
Target Start/End: Complemental strand, 26161822 - 26161640
Alignment:
Q  43 ttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaat-ttaatcttttgaaaatatttatcgagacaa 141  Q
    ||||| ||||||| | ||||| ||||| |||||||||||| |||| |||  ||||||| || ||||||  ||||| |||||||||||||||| |||||||    
T  26161822 ttcacacatgtcaatgcacaactttgaccgttaatattttcaattatctgaagtaaaaaattataaaaaattaatattttgaaaatatttattgagacaa 26161723  T
Q  142 atta------agcattttacatactaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
    || |      | |||||||||| |||| |||| |||||||||| |||||||||   || || || |||| |||||||||||||    
T  26161722 atcaaattataacattttacatgctaatatttgtatttatatattagttaaaaagcatggtcaaaataaatcatgtgaatagt 26161640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 218
Target Start/End: Complemental strand, 36341824 - 36341664
Alignment:
Q  62 aattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaattaagca---ttttacat 157  Q
    ||||||||  |||||||| ||||||| |||| ||||||| || |||||| |||||| ||||| || ||||||| || ||||||  | ||   | ||||||    
T  36341824 aattttgactgttaatatctttaattatctaaagtaaaaaattataaaaatttaatattttgcaagtatttatagaaacaaatcgaacaacatcttacat 36341725  T
Q  158 actaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
     |||||||||||||||||||  |||||||||  ||| |||||  |||||||||||||||||    
T  36341724 tctaacatttatatttatatgttagttaaaaagtatcgttaaattaagtcatgtgaatagt 36341664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 218
Target Start/End: Original strand, 42890402 - 42890561
Alignment:
Q  62 aattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcattttacat 157  Q
    ||||||||  |||||||| ||||||| |||| ||||||| || |||||| |||||| |||||||||||||| ||||||||||| |   | ||| ||||||    
T  42890402 aattttgactgttaatatctttaattttctaaagtaaaa-attataaaaatttaatattttgaaaatatttgtcgagacaaatcaaacaacatcttacat 42890500  T
Q  158 actaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
     |||| |||| |||||||||| |||||||||  ||| || || ||||||||  ||||||||    
T  42890501 gctaatatttgtatttatatattagttaaaaagtatggtcaaaataagtcaaatgaatagt 42890561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 59 - 143
Target Start/End: Complemental strand, 41088794 - 41088709
Alignment:
Q  59 cacaattttgatcgttaatatttttaattgtctatagtaaaacatcat-aaaatttaatcttttgaaaatatttatcgagacaaat 143  Q
    ||||||||||| ||||||||| ||||||| |||| ||||||| || || |||||||||| |||| ||||||||| |||||||||||    
T  41088794 cacaattttgaccgttaatatatttaattatctaaagtaaaaaattataaaaatttaatattttaaaaatatttgtcgagacaaat 41088709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 217
Target Start/End: Complemental strand, 40256263 - 40256102
Alignment:
Q  59 cacaattttgatcgttaatatttttaattgtctatagtaaaacatcat-aaaatttaatcttttgaaaatatttatcgagacaaatta---agcatttta 154  Q
    ||||||||||| ||||||||| ||||||| |||| ||||||| || || |||||||| | |||||||||||||| ||||||||||| |   | ||| |||    
T  40256263 cacaattttgaccgttaatatctttaattatctaaagtaaaa-attataaaaatttactattttgaaaatatttgtcgagacaaatcaaacaacatctta 40256165  T
Q  155 catactaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatag 217  Q
    ||| |||| |||| |||||||| | |||||||||  ||| || ||  ||||||| ||||||||    
T  40256164 catgctaatatttgtatttatacattagttaaaaagtatggtcaaagtaagtcaagtgaatag 40256102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 193
Target Start/End: Complemental strand, 3785766 - 3785589
Alignment:
Q  20 aaatacatgtcgcattcaactatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcat-aaaatttaatct 118  Q
    |||||||||||||| ||||| ||| ||| |||   | ||||||| ||||||| ||||||| ||||||| | |||| ||||| || || ||||||| || |    
T  3785766 aaatacatgtcgcagtcaaccattgcactcatacaaatacacaactttgatcattaatatctttaattatatataataaaagattataaaaatttgatat 3785667  T
Q  119 tttgaaaatatttatcgagacaaatta---agcattttacatactaacatttatatttatatactagttaaaatatat 193  Q
    ||| |||||||||||| |||||||| |   | |||  |  |||||||||||| |||||||||| ||||||||| ||||    
T  3785666 tttaaaaatatttatctagacaaatcaaacaacatcctgtatactaacatttgtatttatatattagttaaaaaatat 3785589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 62 - 143
Target Start/End: Original strand, 23707481 - 23707563
Alignment:
Q  62 aattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaat 143  Q
    ||||||||  |||||||| ||||||| |||| ||||||| || |||||| |||||| |||||||||||||| |||||||||||    
T  23707481 aattttgactgttaatatctttaattatctaaagtaaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaat 23707563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 188
Target Start/End: Complemental strand, 30342319 - 30342148
Alignment:
Q  20 aaatacatgtcgcattcaactatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcat-aaaatttaatct 118  Q
    |||||||||||  | ||||| | ||||| ||||||| |  |||||||| | |||||||| | |||||| |||| | ||||  || || |||||||||| |    
T  30342319 aaatacatgtccaaatcaaccacttcacacatgtcaatgtacaattttaaccgttaata-tcttaattatctaaaataaataattataaaaatttaatat 30342221  T
Q  119 tttgaaaatatttatcgagacaaattaa---gcattttacatactaacatttatatttatatactagttaaaa 188  Q
    ||||||||||||||||||||||||| ||    ||| ||||||||||| |||| |||||||| | |||||||||    
T  30342220 tttgaaaatatttatcgagacaaatcaaacgacatcttacatactaatatttgtatttatacattagttaaaa 30342148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 60 - 188
Target Start/End: Complemental strand, 44732218 - 44732086
Alignment:
Q  60 acaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcattttac 155  Q
    |||||||||| ||||||||| ||||||| | || |||| || || |||||| |||||| |||||||||||||| ||||||||||| |   | ||| ||||    
T  44732218 acaattttgaccgttaatatctttaattatataaagtagaaaattataaaaatttaatattttgaaaatatttgtcgagacaaatcaaacaacatcttac 44732119  T
Q  156 atactaacatttatatttatatactagttaaaa 188  Q
    || |||| |||| |||||||| | |||||||||    
T  44732118 atgctaatatttgtatttatacattagttaaaa 44732086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 196
Target Start/End: Complemental strand, 5529228 - 5529077
Alignment:
Q  49 catgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta-- 145  Q
    ||||||| || |||| ||||| | ||||||| ||||||| | |||| ||||| || |||||| ||| || ||||||||||||| || ||||||||| |      
T  5529228 catgtcaataaacaactttgaccattaatatctttaattatatataataaaaaattataaaaatttgatattttgaaaatattgattgagacaaatcaaa 5529129  T
Q  146 -agcattttacatactaacatttatatttatatactagttaaaatatatagt 196  Q
     | ||| |||||| ||||||||| ||||| |||| ||||||||| |||||||    
T  5529128 taacatcttacatgctaacatttttatttgtatattagttaaaaaatatagt 5529077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 218
Target Start/End: Original strand, 24177000 - 24177185
Alignment:
Q  35 tcaactatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcat-aaaatttaatcttttgaaaatatttat 133  Q
    ||||||| ||||||||||  |  ||||||||||||| ||| |||| ||||| | | |||||||||| || || ||||| |||| |||  ||||| |||||    
T  24177000 tcaactacttcacgcatgctaacacacaattttgattgttgatatctttaagtatttatagtaaaaaattataaaaatataatatttcaaaaatgtttat 24177099  T
Q  134 cgagacaaattaagcattttacatactaacatttatatttatatactagtt-aaaatatatagttaagataagtcatgtgaatagt 218  Q
    ||| |||||| || ||| || ||| ||||||||||  ||||||||  |||| |||| ||| ||| || |||||| |||||||||||    
T  24177100 cgatacaaatcaaacatctttcatgctaacatttacttttatatataagttaaaaaaatagagtcaaaataagttatgtgaatagt 24177185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 72 - 143
Target Start/End: Complemental strand, 21379938 - 21379866
Alignment:
Q  72 gttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaat 143  Q
    |||||||| ||||||| |||| ||||||| || |||||| |||||| |||||||||||||| |||||||||||    
T  21379938 gttaatatctttaattatctaaagtaaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaat 21379866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 49 - 219
Target Start/End: Original strand, 27045453 - 27045627
Alignment:
Q  49 catgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaattaag 147  Q
    |||||||  ||||||||||||   ||||||| ||||||| | | || ||||| || |||||| ||| || ||||||||||||| |||||| ||||||||     
T  27045453 catgtcaaaacacaattttgacaattaatatatttaattatatgtaataaaaaattataaaaatttgatattttgaaaatattcatcgaggcaaattaaa 27045552  T
Q  148 ca---ttttacatactaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagta 219  Q
    ||   | ||| || ||||||||| |||||||||| ||||||||| |||| || ||  |||  |||||||||||||    
T  27045553 caacatcttatatgctaacatttgtatttatatattagttaaaaaatatggtcaaagtaaaccatgtgaatagta 27045627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 60 - 143
Target Start/End: Original strand, 41134544 - 41134628
Alignment:
Q  60 acaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaat 143  Q
    ||||||||||  |||||||| ||||||| |||| ||||||| || |||||| |||||| |||||| ||||||| |||||||||||    
T  41134544 acaattttgactgttaatatctttaattatctaaagtaaaaaattataaaaatttaatattttgagaatatttgtcgagacaaat 41134628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 62 - 188
Target Start/End: Original strand, 46103428 - 46103558
Alignment:
Q  62 aattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcattttacat 157  Q
    ||||||||  |||||||| ||||||| | || ||||||| || |||||| |||||| |||||||||||||| |||| |||||| |   | ||| ||||||    
T  46103428 aattttgactgttaatatctttaattttataaagtaaaaaattataaaaatttaatattttgaaaatatttgtcgaaacaaatcaaacaacatcttacat 46103527  T
Q  158 actaacatttatatttatatactagttaaaa 188  Q
     |||| |||| |||||||||| |||||||||    
T  46103528 gctaatatttgtatttatatattagttaaaa 46103558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 188
Target Start/End: Original strand, 11502635 - 11502768
Alignment:
Q  59 cacaattttgatcgttaatatttttaattgtctatagtaaaacatcat-aaaatttaatcttttgaaaatatttatcgagacaaattaa---gcatttta 154  Q
    ||||||||||| ||||||||| ||||||| | || ||||||| || || |||||||||| |||||||||||||| |  |||||||| ||    ||| |||    
T  11502635 cacaattttgaccgttaatatatttaattatataaagtaaaaaattataaaaatttaatattttgaaaatatttgtttagacaaatcaaacgacatctta 11502734  T
Q  155 catactaacatttatatttatatactagttaaaa 188  Q
    ||| |||| |||| |||||||| | |||||||||    
T  11502735 catgctaatatttgtatttatacattagttaaaa 11502768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 176
Target Start/End: Original strand, 5788433 - 5788553
Alignment:
Q  60 acaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcattttac 155  Q
    ||||||||||  |||||||| ||||||| | || ||| ||| || |||||| |||||| |||||||||||||| ||||||||||| |   | ||| ||||    
T  5788433 acaattttgactgttaatatctttaattatttaaagtgaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaatcaaacaacatcttac 5788532  T
Q  156 atactaacatttatatttata 176  Q
    ||||||| |||| ||||||||    
T  5788533 atactaatatttgtatttata 5788553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 175
Target Start/End: Complemental strand, 2952660 - 2952537
Alignment:
Q  56 ctacacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaattt-aatcttttgaaaatatttatcgagacaaattaagca---tt 151  Q
    |||||||| ||||| | ||||||| ||||||| | |||| ||||| || ||||||||| ||| ||||||||||||| ||  ||| |||| |||||   |     
T  2952660 ctacacaactttgaccattaatatctttaattatatataataaaaaattataaaattttaatattttgaaaatattcatttagaaaaatcaagcaacatc 2952561  T
Q  152 ttacatactaacatttatatttat 175  Q
    |||||| |||||||||||||||||    
T  2952560 ttacatgctaacatttatatttat 2952537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 46 - 221
Target Start/End: Original strand, 49110512 - 49110691
Alignment:
Q  46 acgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcat-aaaatttaatcttttgaaaatatttatcgagacaaatt 144  Q
    |||||||||| ||||||| ||| ||| ||||||||||||| | | |||| ||||| || || ||||||| || ||||||||||||| ||  | | ||||     
T  49110512 acgcatgtcaatacacaactttcatcattaatatttttaaatatatataataaaatattataaaaatttgatattttgaaaatattcattaacagaaatc 49110611  T
Q  145 aagc---attttacatactaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagtaca 221  Q
    || |   |||||||||  |||||||| |||| ||||| ||||||||| |||| || ||  ||| |||| |||||||||||    
T  49110612 aaacaatattttacatcataacatttgtattaatatattagttaaaaaatatggtcaaagtaaatcatttgaatagtaca 49110691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 219
Target Start/End: Original strand, 4131655 - 4131722
Alignment:
Q  152 ttacatactaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagta 219  Q
    |||||| ||||| ||| |||||||||| ||||||||| |||| |||||  ||||| ||||||||||||    
T  4131655 ttacatgctaacttttgtatttatatattagttaaaaaatatggttaaagtaagttatgtgaatagta 4131722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 167
Target Start/End: Complemental strand, 5085002 - 5084921
Alignment:
Q  89 tctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaattaagc--attttacatactaacattt 167  Q
    |||||||||||| || |||||| |||||| |||| |||||||||||| | ||||||||| |  || ||||||||||||||||    
T  5085002 tctatagtaaaaaattataaaaatttaatattttaaaaatatttatcaaaacaaattaaacaaatcttacatactaacattt 5084921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 143
Target Start/End: Complemental strand, 8684019 - 8683937
Alignment:
Q  62 aattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaat 143  Q
    |||||||||  ||||||| ||||||| |||| ||||||| || |||||| |||| | |||||||||||||| | |||||||||    
T  8684019 aattttgattattaatatctttaattatctaaagtaaaaaattataaaaatttactattttgaaaatatttgttgagacaaat 8683937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 193
Target Start/End: Original strand, 44594627 - 44594712
Alignment:
Q  107 aaaatttaatcttttgaaaatatttatcgagacaaattaagcattttacatactaacatttatatttatatactagttaaaatatat 193  Q
    ||||||| || ||||||||||| | || |||||||||||| ||| ||| || |||||| || |||||||||| ||||||||| ||||    
T  44594627 aaaatttgattttttgaaaatactcattgagacaaattaaacatcttatatgctaaca-ttgtatttatatattagttaaaaaatat 44594712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 188
Target Start/End: Complemental strand, 46480023 - 46479903
Alignment:
Q  72 gttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcattttacatactaacattt 167  Q
    |||||||| ||||||| |||| ||| ||| || |||||| |||||| |||| ||||||||| ||||||||||| |   | ||| |||||| |||| ||||    
T  46480023 gttaatatatttaattatctaaagtcaaaaattataaaaatttaatattttaaaaatatttgtcgagacaaatcaaacaacatcttacatgctaatattt 46479924  T
Q  168 atatttatatactagttaaaa 188  Q
     |||||||| | |||||||||    
T  46479923 gtatttatacattagttaaaa 46479903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 188
Target Start/End: Original strand, 35570153 - 35570237
Alignment:
Q  107 aaaatttaatcttttgaaaatatttatcgagacaaat--ta-agcattttacatactaacatttatatttatatactagttaaaa 188  Q
    ||||||| || ||||||||||||||||||||||||||  || | ||| |||||| |||| |||| ||||| |||| |||||||||    
T  35570153 aaaatttgatattttgaaaatatttatcgagacaaatcgtacaacatcttacatgctaaaatttgtatttgtatattagttaaaa 35570237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 143
Target Start/End: Complemental strand, 45332075 - 45332039
Alignment:
Q  107 aaaatttaatcttttgaaaatatttatcgagacaaat 143  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  45332075 aaaatttaatattttgaaaatatttatcaagacaaat 45332039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 47525870 - 47525950
Alignment:
Q  20 aaatacatgtcgcattcaactatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaa 100  Q
    |||||||||||||| ||||||| | ||| ||||| | |||| |||||||||  ||||||||||| ||| | |||| |||||    
T  47525870 aaatacatgtcgcagtcaactactacacacatgttaatacataattttgattattaatattttttattatatataataaaa 47525950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 143
Target Start/End: Original strand, 48516300 - 48516336
Alignment:
Q  107 aaaatttaatcttttgaaaatatttatcgagacaaat 143  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  48516300 aaaatttaatattttgaaaatatttatcgagataaat 48516336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 20 - 216
Target Start/End: Complemental strand, 25527647 - 25527450
Alignment:
Q  20 aaatacatgtcgcattcaactatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcat-aaaatttaatct 118  Q
    |||||||||||||| | ||| | ||||| ||||| | | ||||| ||||||||||||||||||||||| |||| ||||||| || || |||||||||| |    
T  25527647 aaatacatgtcgcagttaaccacttcacacatgttaatgcacaactttgatcgttaatatttttaattatctaaagtaaaaaattataaaaatttaatat 25527548  T
Q  119 tttgaaaatatttatcgagacaaattaagcattttacatactaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaata 216  Q
    |||| ||||||||||||| ||||||  | ||| ||||||  ||| |||| ||||||||||  |||||||| |||| ||  |  |||||||||||||||    
T  25527547 tttgtaaatatttatcgaaacaaatcgaacatcttacatgttaatatttgtatttatatatcagttaaaaaatatggtcgaagtaagtcatgtgaata 25527450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 59 - 218
Target Start/End: Complemental strand, 6910541 - 6910378
Alignment:
Q  59 cacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcatttta 154  Q
    ||||||||||| ||||||| | ||||||| |||| ||||||| || |||||| |||||| |||||||||||||| ||||||||||| |   | ||| |||    
T  6910541 cacaattttgaccgttaatctctttaattatctaaagtaaaaaattataaaaatttaatattttgaaaatatttttcgagacaaatcaaacaacatctta 6910442  T
Q  155 catactaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
    |||  ||| |||| |||||||| | ||||||||| |||| |||||  ||||||| |||||||||    
T  6910441 catgttaatatttgtatttatacattagttaaaaaatatggttaaagtaagtcaagtgaatagt 6910378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 50 - 188
Target Start/End: Complemental strand, 33416015 - 33415873
Alignment:
Q  50 atgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta--- 145  Q
    |||||| | |||||||||||  |||||||| ||||||| |||| ||||||| || |||||| |||||| |||||||||||||| ||||||||||| |       
T  33416015 atgtcaatgcacaattttgactgttaatatatttaattatctaaagtaaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaatcaaac 33415916  T
Q  146 agcattttacatactaacatttatatttatatactagttaaaa 188  Q
    | ||| |||||| |||| |||| |||||||||| |||||||||    
T  33415915 aacatcttacatgctaatatttgtatttatatattagttaaaa 33415873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 62 - 218
Target Start/End: Original strand, 13499393 - 13499553
Alignment:
Q  62 aattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcattttacat 157  Q
    ||||||||  |||||||| ||||||| |||| ||||||| || |||||| |||||| |||||||||||||| ||||||||||| |   | ||| ||||||    
T  13499393 aattttgactgttaatatctttaattttctaaagtaaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaatcaaacaacatcttacat 13499492  T
Q  158 actaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
     |||| |||| |||||||||| |||||||||  ||| || ||  ||||||| |||||||||    
T  13499493 gctaatatttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagt 13499553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 62 - 218
Target Start/End: Complemental strand, 20765400 - 20765240
Alignment:
Q  62 aattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcattttacat 157  Q
    ||||||||  |||||||| ||||||| |||| ||||||| || |||||| |||||| |||||||||||||| ||||||||||| |   | ||| ||||||    
T  20765400 aattttgactgttaatatctttaattttctaaagtaaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaatcaaacaacatcttacat 20765301  T
Q  158 actaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
      ||| |||| |||||||||| |||||||||  |||||| ||  ||||||| |||||||||    
T  20765300 gttaatatttgtatttatatattagttaaaaagtatagtcaaagtaagtcaagtgaatagt 20765240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 20 - 188
Target Start/End: Complemental strand, 21005539 - 21005367
Alignment:
Q  20 aaatacatgtcgcattcaactatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatct 118  Q
    |||||||||||  | ||||| |||||||  ||| || | || ||||||||  |||||||| ||||||| |||| ||||||| || |||||| |||||| |    
T  21005539 aaatacatgtccaagtcaaccatttcacatatgccaatgcataattttgactgttaatatctttaattttctaaagtaaaaaattataaaaatttaatat 21005440  T
Q  119 tttgaaaatatttatcgagacaaatta---agcattttacatactaacatttatatttatatactagttaaaa 188  Q
    ||||||||||||| ||||||||||| |   | ||| |||||| |||| ||||||||||||||| || ||||||    
T  21005439 tttgaaaatatttgtcgagacaaatcaaacaacatcttacatgctaatatttatatttatatattaattaaaa 21005367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 62 - 218
Target Start/End: Original strand, 27334789 - 27334949
Alignment:
Q  62 aattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcattttacat 157  Q
    ||||||||  |||||||| ||||||| |||| ||||||| || |||||| |||||| |||||||||||||| ||||||||||| |   | ||| ||||||    
T  27334789 aattttgactgttaatatctttaattttctaaagtaaaaaattataaaaatttaatattttgaaaatatttttcgagacaaatcaaacaacatcttacat 27334888  T
Q  158 actaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
     |||| |||| |||||||||| |||||||||  ||| || ||  ||||||| |||||||||    
T  27334889 gctaatatttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagt 27334949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 62 - 218
Target Start/End: Complemental strand, 30214007 - 30213848
Alignment:
Q  62 aattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcattttacat 157  Q
    ||||||||  ||||||||||| |||| |||| ||||||| || |||||| |||||| |||||||||||||| ||||||||||| |   | ||| ||||||    
T  30214007 aattttgactgttaatatttt-aattttctaaagtaaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaatcaaacaacatcttacat 30213909  T
Q  158 actaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
     |||| |||| |||||||||| |||||||||  ||| || || |||||||| |||||||||    
T  30213908 gctaatatttgtatttatatattagttaaaaagtatggtcaaaataagtcaagtgaatagt 30213848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 62 - 218
Target Start/End: Original strand, 39866199 - 39866359
Alignment:
Q  62 aattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcattttacat 157  Q
    ||||||||  |||||||| ||||||| |||| ||||||| || |||||| |||||| |||||||||||||| ||||||||||| |   | ||| ||||||    
T  39866199 aattttgactgttaatatctttaattttctaaagtaaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaatcaaacaacatcttacat 39866298  T
Q  158 actaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
     |||| |||| |||||||||| |||||||||  ||| || ||  ||||||| |||||||||    
T  39866299 gctaatatttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagt 39866359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 20 - 188
Target Start/End: Original strand, 43181372 - 43181543
Alignment:
Q  20 aaatacatgtcgcattcaactatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatct 118  Q
    |||||||||||  | ||||| | ||| | ||||||| | || |||||||| ||||||||| ||||||| || | ||||||| || |||||| |||||| |    
T  43181372 aaatacatgtccaaatcaaccacttctcacatgtcaatgcataattttgaccgttaatatctttaattatcaa-agtaaaaaattataaaaatttaatat 43181470  T
Q  119 tttgaaaatatttatcgagacaaatta---agcattttacatactaacatttatatttatatactagttaaaa 188  Q
    ||| ||||||||| |||||||||||||   | ||| ||||||||||| ||||||||||||| | |||||||||    
T  43181471 tttaaaaatatttgtcgagacaaattaaacaacatcttacatactaatatttatatttatacattagttaaaa 43181543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 50 - 143
Target Start/End: Original strand, 43467788 - 43467882
Alignment:
Q  50 atgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaat 143  Q
    |||||| | ||||||||||| ||||||||| ||||||| |||| ||||||| || |||||| |||||| |||||||||||||| |||||||||||    
T  43467788 atgtcaatgcacaattttgaccgttaatatctttaattatctaaagtaaaaaattataaaagtttaatattttgaaaatatttgtcgagacaaat 43467882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 65 - 193
Target Start/End: Original strand, 3430338 - 3430467
Alignment:
Q  65 tttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaattaagcattttacatactaac 163  Q
    ||||||| |||||||||||||||   |||| ||||| || |||||| ||| || || |||||||||| |||||||||||| || |||||||||| ||||     
T  3430338 tttgatcattaatatttttaattaaatatattaaaatattataaaaattttatattatgaaaatattaatcgagacaaatcaaacattttacatgctaat 3430437  T
Q  164 atttatatttatatactagttaaaatatat 193  Q
    |||| |||| ||||| ||||||||| ||||    
T  3430438 atttttattaatatattagttaaaaaatat 3430467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 62 - 188
Target Start/End: Original strand, 27010532 - 27010662
Alignment:
Q  62 aattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcattttacat 157  Q
    ||||||||  |||||||| ||||||| |||| ||||||| || |||||| |||||| |||||||||||||| ||||||||||| |   | ||| ||||||    
T  27010532 aattttgactgttaatatctttaattttctaaagtaaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaatcaaacaacatcttacat 27010631  T
Q  158 actaacatttatatttatatactagttaaaa 188  Q
     |||| |||| |||||||||| |||||||||    
T  27010632 gctaatatttgtatttatatattagttaaaa 27010662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 218
Target Start/End: Complemental strand, 21797760 - 21797600
Alignment:
Q  62 aattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcattttacat 157  Q
    |||||||| | ||||||| ||||||| |||| ||||||| || |||||| |||||| |||||||||||||| ||||||||||| |   | ||| ||||||    
T  21797760 aattttgaccattaatatctttaattatctaaagtaaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaatcaaacaacatcttacat 21797661  T
Q  158 actaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
     |||| |||| |||||||| | |||||||||  ||| || || |||| ||| |||||||||    
T  21797660 gctaatatttgtatttatacattagttaaaaagtatggtcaaaataaatcaagtgaatagt 21797600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 143
Target Start/End: Complemental strand, 32221049 - 32220955
Alignment:
Q  50 atgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcat-aaaatttaatcttttgaaaatatttatcgagacaaat 143  Q
    |||||| | ||||||||||| ||||||||| ||||||| |||| ||||||| || || |||||||||| |||| ||||||||| |||||||||||    
T  32221049 atgtcaatgcacaattttgaccgttaatatctttaattatctaaagtaaaaaattataaaaatttaatattttaaaaatatttgtcgagacaaat 32220955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 218
Target Start/End: Original strand, 42490266 - 42490414
Alignment:
Q  74 taatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcattttacatactaacatttat 169  Q
    |||||| ||||||| |||| ||||||| || |||||| |||||| |||||||||||||| ||||||||||| |   | ||| |||||| |||| |||| |    
T  42490266 taatatctttaattttctaaagtaaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaatcaaacaacatcttacatgctaatatttgt 42490365  T
Q  170 atttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
    ||||||||| |||||||||  ||| || ||  ||||||| |||||||||    
T  42490366 atttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagt 42490414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 118 - 199
Target Start/End: Original strand, 41252881 - 41252962
Alignment:
Q  118 ttttgaaaatatttatcgagacaaattaagcattttacatactaacatttatatttatatactagttaaaatatatagttaa 199  Q
    ||||||||||||| |||||||||||| || ||| ||| || ||||||||| |||||||||| ||||||||| |||| |||||    
T  41252881 ttttgaaaatattcatcgagacaaatcaaacatcttatatgctaacatttgtatttatatattagttaaaaaatatggttaa 41252962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 188
Target Start/End: Original strand, 15332822 - 15332994
Alignment:
Q  20 aaatacatgtcgcattcaactatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagt-aaaacatcataaaatttaatct 118  Q
    ||||||||||| || ||||| | | ||| |||| || ||||||| ||||| | ||||||||||||||| | |||| | |||| || | ||||||| || |    
T  15332822 aaatacatgtcccagtcaaccactacacacatgccaatacacaactttgaccattaatatttttaattatatataataaaaaaataaaaaaatttgatat 15332921  T
Q  119 tttgaaaatatttatcgagacaaatta---agcattttacatactaacatttatatttatatactagttaaaa 188  Q
    ||| |||||||| |||||||| ||| |   | ||| |||||| ||||||||| |||||||||| |||||||||    
T  15332922 ttttaaaatattcatcgagaccaatcaaacaacatcttacatgctaacatttgtatttatatattagttaaaa 15332994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 62 - 218
Target Start/End: Original strand, 42761541 - 42761701
Alignment:
Q  62 aattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcattttacat 157  Q
    ||||||||  |||||||| ||||||| | || ||||||| || |||||| |||||| |||||||||||||| |||| |||||| |   | ||| ||||||    
T  42761541 aattttgactgttaatatctttaattttataaagtaaaaaattataaaaatttaatattttgaaaatatttgtcgaaacaaatcaaacaacatcttacat 42761640  T
Q  158 actaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
     |||| |||| |||||||||| |||||||||  ||| || ||  ||||||| |||||||||    
T  42761641 gctaatatttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagt 42761701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 44562030 - 44561906
Alignment:
Q  20 aaatacatgtcgcattcaactatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcat-aaaatttaatct 118  Q
    |||||||||||||| ||||| | ||||| |||| || | ||||| ||||| ||||||||| ||||||| |||| ||||||  |  || |||||||||  |    
T  44562030 aaatacatgtcgcagtcaaccacttcacacatgccaattcacaactttgaccgttaatatctttaattatctaaagtaaagaactataaaaatttaacat 44561931  T
Q  119 tttgaaaatatttatcgagacaaat 143  Q
    |||| ||||||||||||| ||||||    
T  44561930 tttgtaaatatttatcgaaacaaat 44561906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 144
Target Start/End: Complemental strand, 19824087 - 19824016
Alignment:
Q  74 taatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatt 144  Q
    |||||| ||||||| |||| ||||||| || |||||| |||||| |||||||||||||| ||||||||||||    
T  19824087 taatatctttaattatctacagtaaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaatt 19824016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 188
Target Start/End: Complemental strand, 33803729 - 33803596
Alignment:
Q  59 cacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcatttta 154  Q
    |||| |||||| ||||||||||||||||| | || | ||||| || |||||| |||||| |||||||||||||| || |||||||| |   | ||| |||    
T  33803729 cacacttttgaccgttaatatttttaattatttaaaataaaaaattataaaaatttaatattttgaaaatatttgtcaagacaaatcaaacaacatctta 33803630  T
Q  155 catactaacatttatatttatatactagttaaaa 188  Q
    ||  |||| ||||||||||||| | |||||||||    
T  33803629 caagctaatatttatatttatacattagttaaaa 33803596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 212
Target Start/End: Complemental strand, 41943429 - 41943264
Alignment:
Q  52 gtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcat--aaaatttaatcttttgaaaatatttatcgagacaaatta---a 146  Q
    |||| |||| |||||||| | ||||||||||||||| || ||| ||| | || ||  ||||||| || |||| |||||||| || ||||||||| |   |    
T  41943429 gtcaatacataattttgaccattaatatttttaattatcaataataagaaattataaaaaatttgatattttaaaaatattcattgagacaaatcaaaca 41943330  T
Q  147 gcattttacatactaacatttatatttatatactagttaaaatatatagttaagataagtcatgtg 212  Q
     ||| ||| ||| |||||||| |||||| ||| ||||||||| |||| ||||| |||||| |||||    
T  41943329 acatcttatatattaacatttgtatttaaatattagttaaaaaatattgttaaaataagttatgtg 41943264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 219
Target Start/End: Original strand, 47164465 - 47164672
Alignment:
Q  20 aaatacatgtcgcattcaactatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatct 118  Q
    |||||||||||||| ||||  ||| ||| ||| ||| |||| ||||||||   ||||||| ||||||| | |||| ||||| || |||||| ||| || |    
T  47164465 aaatacatgtcgcagtcaatcattgcacacatatcaatacataattttgactattaatatctttaattatatataataaaaaattataaaaatttgatat 47164564  T
Q  119 tttgaaaatatttatcga------gacaaattaagcattttacatactaacatttata-tttatatactagttaaaatatatagttaagataagtcatgt 211  Q
    ||||||| |||  |||||      ||||||| || ||| |||||||||||||||| || |||||||| ||||||||| ||||  ||||  ||||| ||||    
T  47164565 tttgaaattatacatcgagttcgagacaaatcaaacatcttacatactaacatttgtattttatatattagttaaaaaatatgattaaagtaagttatgt 47164664  T
Q  212 gaatagta 219  Q
     |||||||    
T  47164665 aaatagta 47164672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 159 - 218
Target Start/End: Original strand, 27813447 - 27813506
Alignment:
Q  159 ctaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
    ||||||||| |||||||||| ||||||||| ||||||| || |||||  |||||||||||    
T  27813447 ctaacatttgtatttatatattagttaaaaaatatagtcaaaataagctatgtgaatagt 27813506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 211
Target Start/End: Complemental strand, 44856456 - 44856397
Alignment:
Q  152 ttacatactaacatttatatttatatactagttaaaatatatagttaagataagtcatgt 211  Q
    |||||||||||||||| |||||||||  |||||||||  |||||||||  ||||||||||    
T  44856456 ttacatactaacatttgtatttatatgttagttaaaaagtatagttaaagtaagtcatgt 44856397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 109
Target Start/End: Complemental strand, 42049962 - 42049912
Alignment:
Q  59 cacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaa 109  Q
    ||||| ||||||||||||||||||||||| |||| ||||||| || |||||    
T  42049962 cacaactttgatcgttaatatttttaattatctaaagtaaaaaatgataaa 42049912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 143
Target Start/End: Complemental strand, 36227752 - 36227667
Alignment:
Q  59 cacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaatt-taatcttttgaaaatatttatcgagacaaat 143  Q
    ||||||||||| |||||| || ||||||| | || ||||||| || |||||| | |||| |||| ||||||||| |||||||||||    
T  36227752 cacaattttgaccgttaaaatctttaattatttaaagtaaaaaattataaaaatataatattttaaaaatatttgtcgagacaaat 36227667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 28690494 - 28690414
Alignment:
Q  20 aaatacatgtcgcattcaactatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaa 100  Q
    |||||||||||  | ||||| | |||||  |||||| | ||||||||||| ||||||||| ||||||| |||| |||||||    
T  28690494 aaatacatgtccaagtcaaccacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatctaaagtaaaa 28690414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 143
Target Start/End: Original strand, 42469571 - 42469607
Alignment:
Q  107 aaaatttaatcttttgaaaatatttatcgagacaaat 143  Q
    |||||||||| ||||||||||||||||||| ||||||    
T  42469571 aaaatttaatattttgaaaatatttatcgatacaaat 42469607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 48)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 20 - 218
Target Start/End: Original strand, 2760746 - 2760945
Alignment:
Q  20 aaatacatgtcgcattcaactatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatct 118  Q
    |||||||||||  | ||||| | |||||  |||||| | || ||||||||  |||||||| ||||||| |||| ||||||| || |||||| |||||| |    
T  2760746 aaatacatgtccaagtcaaccacttcacatatgtcaatgcataattttgactgttaatatctttaattttctaaagtaaaaaattataaaaatttaatat 2760845  T
Q  119 tttgaaaatatttatcgagacaaattaagcattttacatactaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
    || |||||||||| ||||||||||| || ||| |||||| |||| |||| |||||||||| ||||||||| |||| || ||  ||||||| |||||||||    
T  2760846 ttcgaaaatatttgtcgagacaaatcaaacatcttacatgctaatatttgtatttatatattagttaaaaaatatggtcaaagtaagtcaagtgaatagt 2760945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 50 - 188
Target Start/End: Complemental strand, 10550639 - 10550500
Alignment:
Q  50 atgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaattaagc 148  Q
    |||||| || |||| ||||||| ||||||| ||||||| | |||| ||||| || |||||| ||| || |||| |||||||| |||||||||||| || |    
T  10550639 atgtcaatatacaactttgatcattaatatatttaattatatataataaaaaattataaaaatttgatattttaaaaatattcatcgagacaaatcaaac 10550540  T
Q  149 attttacatactaacatttatatttatatactagttaaaa 188  Q
    || |||||| ||||||||| |||||||||| |||||||||    
T  10550539 atcttacatgctaacatttttatttatatattagttaaaa 10550500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 59 - 216
Target Start/End: Complemental strand, 26125915 - 26125754
Alignment:
Q  59 cacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcatttta 154  Q
    |||||||||||| |||||||| |||| ||||||| ||||||| || |||||| |||||| |||||||||||||| ||||||||||| |   | ||| |||    
T  26125915 cacaattttgattgttaatatctttagttgtctaaagtaaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaatcaaacaacatctta 26125816  T
Q  155 catactaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaata 216  Q
    ||| |||| |||| |||||||| | ||||||||| |||| || ||  ||||||| |||||||    
T  26125815 catgctaatatttgtatttatacattagttaaaaaatatggtcaaagtaagtcaagtgaata 26125754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 32364348 - 32364475
Alignment:
Q  20 aaatacatgtcgcattcaactatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcat-aaaatttaatct 118  Q
    |||||||||||||| | ||||| ||||| ||||||| | ||||| ||| ||||| ||||| ||||||| |||| ||||||| || || |||||||||| |    
T  32364348 aaatacatgtcgcagttaactacttcacacatgtcaatgcacaactttaatcgtcaatatctttaattatctaaagtaaaaaattataaaaatttaatat 32364447  T
Q  119 tttgaaaatatttatcgagacaaattaa 146  Q
    |||||||| |||||| ||||||||||||    
T  32364448 tttgaaaaaatttattgagacaaattaa 32364475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 62 - 218
Target Start/End: Complemental strand, 29830547 - 29830387
Alignment:
Q  62 aattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcattttacat 157  Q
    ||||||||| |||||||| ||||||| |||| ||||||| || |||||| |||||| |||||||||||||| ||||||||||| |   | ||| ||||||    
T  29830547 aattttgattgttaatatctttaattttctaaagtaaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaatcaaacaacatcttacat 29830448  T
Q  158 actaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
     |||| |||| |||||||||| |||||||||  ||| || ||  ||||||| |||||||||    
T  29830447 gctaatatttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagt 29830387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 60 - 193
Target Start/End: Original strand, 32871416 - 32871552
Alignment:
Q  60 acaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaatttaatcttttgaaaatatttatcgagacaaatta---agcattttaca 156  Q
    |||| ||||||||||||||| ||||||| |||| ||||||| || |||||||||||| |||||||||||| |||||| |||||| |   | |||  ||||    
T  32871416 acaactttgatcgttaatatatttaattatctaaagtaaaaaattataaaatttaattttttgaaaatatctatcgaaacaaatcaaacaacatcctaca 32871515  T
Q  157 tactaacatttatatttatatactagttaaaatatat 193  Q
    |||| |||||| |||||| ||| ||||||||| ||||    
T  32871516 tacttacatttgtatttacatattagttaaaaaatat 32871552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 62 - 218
Target Start/End: Original strand, 44232135 - 44232295
Alignment:
Q  62 aattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcattttacat 157  Q
    ||||||||  |||||||||||||||| |||| ||||||| || |||||| |||||| |||||||||||||| ||||||||||| |   | ||| ||||||    
T  44232135 aattttgactgttaatatttttaattttctaaagtaaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaatcaaacaacatcttacat 44232234  T
Q  158 actaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
     |||| |||| |||||||||| |||||||||  ||| || ||  ||||||| |||||||||    
T  44232235 gctaatatttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagt 44232295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 59 - 218
Target Start/End: Complemental strand, 17610487 - 17610324
Alignment:
Q  59 cacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcatttta 154  Q
    ||||||||||| |||| |||| ||||||| |||| ||||||| || |||||| |||||| |||||||||||||| |||||||||||||   | ||| |||    
T  17610487 cacaattttgaccgttgatatctttaattatctaaagtaaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaattaaacaacatctta 17610388  T
Q  155 catactaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
    ||| |||| |||| |||||||| | ||| ||||| |||| || ||  ||||||| |||||||||    
T  17610387 catgctaatatttgtatttatacattagctaaaaaatatggtcaaagtaagtcaagtgaatagt 17610324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 20 - 218
Target Start/End: Original strand, 47386302 - 47386504
Alignment:
Q  20 aaatacatgtcgcattcaactatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcat-aaaatttaatct 118  Q
    |||||||||||  | ||||||| ||||| |||| || |  | |||||||| ||||||||| ||||||| |||| ||||||| || || |||||||||| |    
T  47386302 aaatacatgtccaagtcaactacttcacacatgccaatgtataattttgaccgttaatatctttaattatctaaagtaaaaaattataaaaatttaatat 47386401  T
Q  119 tttgaaaatatttatcgagacaaatta---agcattttacatactaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaat 215  Q
    ||||||||||| | ||||||||||| |   | ||| |||||| |||| |||| |||||||| | ||||||||| |||| || ||  ||||||| ||||||    
T  47386402 tttgaaaatatatgtcgagacaaatcaaacaacatcttacatgctaatatttgtatttatacattagttaaaaaatatggtcaaagtaagtcaagtgaat 47386501  T
Q  216 agt 218  Q
    |||    
T  47386502 agt 47386504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 65 - 216
Target Start/End: Original strand, 2570943 - 2571098
Alignment:
Q  65 tttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaattaagc---attttacatact 160  Q
    ||||| ||||||||| ||||||| | || ||||||| || |||||| |||||| |||| ||||||||| | ||||||||| ||     || |||||| ||    
T  2570943 tttgaccgttaatatctttaattatttaaagtaaaaaattataaaaatttaatattttaaaaatatttgttgagacaaatcaaattatatcttacatgct 2571042  T
Q  161 aacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaata 216  Q
    ||||||| |||||||||| ||||||||| ||||||| || |||| |||||||||||    
T  2571043 aacatttgtatttatatattagttaaaaaatatagtcaaaataaatcatgtgaata 2571098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 59 - 143
Target Start/End: Original strand, 9029504 - 9029589
Alignment:
Q  59 cacaattttgatcgttaatatttttaattgtctatagtaaaacatcat-aaaatttaatcttttgaaaatatttatcgagacaaat 143  Q
    ||||||||||||||||||||| ||||||| |||| ||||||| || || |||||||||| |||| ||||||||| |||||||||||    
T  9029504 cacaattttgatcgttaatatctttaattatctaaagtaaaaaattataaaaatttaatattttaaaaatatttgtcgagacaaat 9029589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 50 - 217
Target Start/End: Original strand, 54330736 - 54330907
Alignment:
Q  50 atgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta--- 145  Q
    |||||| | ||||||||| | ||||||||| ||||||| |||| ||||||| || |||||| |||||| |||||||||||||| |||||| |||| |       
T  54330736 atgtcaatgcacaattttaaccgttaatatatttaattatctaaagtaaaaaattataaaaatttaatattttgaaaatatttgtcgagataaatcaaac 54330835  T
Q  146 agcattttacatactaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatag 217  Q
    | ||| |||||| |||| |||| |||||||||| |||||||||  ||| || ||  ||||||| ||||||||    
T  54330836 aacatcttacatgctaatatttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatag 54330907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 143
Target Start/End: Original strand, 17446649 - 17446773
Alignment:
Q  20 aaatacatgtcgcattcaactatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcat-aaaatttaatct 118  Q
    |||||||||||  | ||||||| |||||  |||||| | ||||||||||| ||||||||| ||||||| | || ||||||| || || |||||||||| |    
T  17446649 aaatacatgtccaagtcaactacttcacatatgtcaatgcacaattttgaccgttaatatctttaattatataaagtaaaaaattataaaaatttaatat 17446748  T
Q  119 tttgaaaatatttatcgagacaaat 143  Q
    ||| ||||||||| |||||||||||    
T  17446749 tttaaaaatatttgtcgagacaaat 17446773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 59 - 221
Target Start/End: Complemental strand, 38721544 - 38721378
Alignment:
Q  59 cacaattttgatcgttaatatttttaattgtctatagtaaaacatcat-aaaatttaatcttttgaaaatatttatcgagacaaatt---aagcatttta 154  Q
    ||||||||||||||||||||| ||||||| | || ||||||| || || |||||||||| ||  | ||||| ||||||| |||||||    | ||| |||    
T  38721544 cacaattttgatcgttaatatctttaattatttaaagtaaaaaattataaaaatttaatattgagtaaatagttatcgaaacaaattgaacaacatctta 38721445  T
Q  155 catactaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagtaca 221  Q
    ||| ||||||||| |||||||||| | ||||||| ||||  | || |||||||||||||||| ||||    
T  38721444 catgctaacatttgtatttatatatttgttaaaaaatatgatcaaaataagtcatgtgaataataca 38721378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 62 - 188
Target Start/End: Complemental strand, 43967927 - 43967797
Alignment:
Q  62 aattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcattttacat 157  Q
    ||||||||  |||||||| ||||||| |||| ||||||| || |||||| |||||| |||||||||||||| ||||||||||| |   | ||| ||||||    
T  43967927 aattttgactgttaatatctttaattttctaaagtaaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaatcaaacaacatcttacat 43967828  T
Q  158 actaacatttatatttatatactagttaaaa 188  Q
     |||| |||| |||||||||| |||||||||    
T  43967827 gctaatatttgtatttatatattagttaaaa 43967797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 62 - 188
Target Start/End: Original strand, 55209632 - 55209762
Alignment:
Q  62 aattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcattttacat 157  Q
    ||||||||  |||||||| ||||||| |||| ||||||| || |||||| |||||| |||||||||||||| ||||||||||| |   | ||| ||||||    
T  55209632 aattttgactgttaatatctttaattttctaaagtaaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaatcaaacaacatcttacat 55209731  T
Q  158 actaacatttatatttatatactagttaaaa 188  Q
     |||| |||| |||||||||| |||||||||    
T  55209732 gctaatatttgtatttatatattagttaaaa 55209762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 59 - 188
Target Start/End: Original strand, 19433413 - 19433546
Alignment:
Q  59 cacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcatttta 154  Q
    ||||||||||| ||||||||| ||||||| |||| | ||||| || |||||| |||||| ||||||||||||| |||||||||||| |   | ||| |||    
T  19433413 cacaattttgaccgttaatatctttaattatctaaaataaaaaattataaaaatttaatattttgaaaatattcatcgagacaaatcaaacaacatctta 19433512  T
Q  155 catactaacatttatatttatatactagttaaaa 188  Q
    ||| |||| |||| |||||||| | |||||||||    
T  19433513 catgctaatatttgtatttatacaatagttaaaa 19433546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 43 - 218
Target Start/End: Original strand, 25296618 - 25296798
Alignment:
Q  43 ttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaaca-tcataaaa-tttaatcttttgaaaatatttatcgagaca 140  Q
    ||||| ||||||| | ||||||||||| ||||||||  ||||||| |||| ||||||| | | |||||| |||||| |||||||||||||| ||||||||    
T  25296618 ttcacacatgtcaatgcacaattttgaccgttaataactttaattatctaaagtaaaaaaattataaaaatttaatattttgaaaatatttgtcgagaca 25296717  T
Q  141 aatta---agcattttacatactaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
    ||| |   | ||| |||||| |||| |||| |||||||| | |||||||||  ||| || ||  ||||||| |||||||||    
T  25296718 aatcaaacaacatcttacatgctaatatttgtatttatacattagttaaaaagtatggtcaaagtaagtcaagtgaatagt 25296798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 218
Target Start/End: Original strand, 38416708 - 38416868
Alignment:
Q  62 aattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcattttacat 157  Q
    ||||||||  |||||||| ||||||| |||| ||||||| || |||||| |||||| |||||||||||||| |||| |||||| |   | ||| ||||||    
T  38416708 aattttgactgttaatatctttaattttctaaagtaaaaaattataaaaatttaatattttgaaaatatttgtcgacacaaatcaaacaacatcttacat 38416807  T
Q  158 actaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
     |||| |||| |||||||||| |||||||||  ||| || ||  ||||||| |||||||||    
T  38416808 gctaatatttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagt 38416868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 107 - 188
Target Start/End: Complemental strand, 39307854 - 39307770
Alignment:
Q  107 aaaatttaatcttttgaaaatatttatcgagacaaattaagca---ttttacatactaacatttatatttatatactagttaaaa 188  Q
    |||||||||| |||| ||||||||| | |||||||||||| ||   |||||||||||||||||| |||||||||| |||||||||    
T  39307854 aaaatttaatattttaaaaatatttgttgagacaaattaaacaacattttacatactaacatttgtatttatatattagttaaaa 39307770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 188
Target Start/End: Complemental strand, 45292078 - 45291906
Alignment:
Q  20 aaatacatgtcgcattcaactatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatct 118  Q
    |||||||||||  | ||||||| |||||  ||| || | || ||||||||  |||||||| ||||||| | || ||||||| || |||||| |||||| |    
T  45292078 aaatacatgtccaagtcaactacttcacatatgccaatgcataattttgactgttaatatctttaattttttaaagtaaaaaattataaaaatttaatat 45291979  T
Q  119 tttgaaaatatttatcgagacaaatta---agcattttacatactaacatttatatttatatactagttaaaa 188  Q
    ||||||||||||| ||||||||||| |   | ||| |||||| |||| |||| |||||||||| |||||||||    
T  45291978 tttgaaaatatttgtcgagacaaatcaaacaacatcttacatgctaatatttgtatttatatattagttaaaa 45291906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 23 - 218
Target Start/End: Original strand, 36522987 - 36523186
Alignment:
Q  23 tacatgtcgcattcaactatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcat-aaaatttaatctttt 121  Q
    ||||||||||| ||||| ||||||| ||||||| | || || ||||| | ||||||| || |||| |||| ||||||| || || |||||||||| ||||    
T  36522987 tacatgtcgcagtcaaccatttcacacatgtcaatgcataactttgaccattaatatcttgaattatctaaagtaaaaaattataaaaatttaatatttt 36523086  T
Q  122 gaaaatatttatcgagacaaat---taagcattttacatactaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
    |  |||||||||||| | ||||     | ||| ||||||  |||||||| |||||||||| |||||||||  |||||| ||  |||||||||| ||||||    
T  36523087 gtgaatatttatcgaaataaatcgaacaacatcttacatgttaacatttgtatttatatattagttaaaaagtatagtcaaagtaagtcatgtaaatagt 36523186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 59 - 143
Target Start/End: Complemental strand, 55192031 - 55191946
Alignment:
Q  59 cacaattttgatcgttaatatttttaattgtctatagtaaaacatcat-aaaatttaatcttttgaaaatatttatcgagacaaat 143  Q
    ||||||||||| ||||||||| ||||||| |||| ||||||| || || |||||||||| |||| ||||||||| |||||||||||    
T  55192031 cacaattttgaccgttaatatatttaattatctaaagtaaaaaattataaaaatttaatattttaaaaatatttgtcgagacaaat 55191946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 144
Target Start/End: Original strand, 5118838 - 5118941
Alignment:
Q  40 tatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaatttaatcttttgaaaatatttatcgagac 139  Q
    |||||||| ||||||| | || |||||||| ||  |||||| |||||| |||| ||||||| || |||||||||||| ||||| ||||||||||| ||||    
T  5118838 tatttcacacatgtcaatgcataattttgaccgacaatattcttaattatctaaagtaaaaaattataaaatttaatattttg-aaatatttatctagac 5118936  T
Q  140 aaatt 144  Q
    |||||    
T  5118937 aaatt 5118941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 213
Target Start/End: Complemental strand, 7614861 - 7614664
Alignment:
Q  20 aaatacatgtcgcattcaactatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatct 118  Q
    |||||||||||||| ||||| | | ||| ||||| | ||  |||||||||   ||||||| ||||||| | |||| ||| | || |||||| ||| || |    
T  7614861 aaatacatgtcgcagtcaaccactacacacatgttaatattcaattttgactattaatatctttaattatatataataagaaattataaaaatttgatat 7614762  T
Q  119 tttgaaaatatttatcgagacaaattaagca---ttttacatactaacatttatatttatatactagttaaaatatatagttaagataagtcatgtga 213  Q
    |||||||||||| ||||| || ||| || ||   | |||||| ||||||||| |||||||||| ||||||||| |||| || || |||||||||||||    
T  7614761 tttgaaaatattcatcgaaacgaatcaaacaacatcttacatgctaacatttgtatttatatattagttaaaaaatatggtcaaaataagtcatgtga 7614664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 188
Target Start/End: Complemental strand, 12625458 - 12625325
Alignment:
Q  59 cacaattttgatcgttaatatttttaattgtctatagtaaaacatcat-aaaatttaatcttttgaaaatatttatcgagacaaatta---agcatttta 154  Q
    ||||||||||| ||||||||| ||||||| |||| ||||||| || || |||||||||| |||  ||||||||| ||||||||||| |   | ||| |||    
T  12625458 cacaattttgaccgttaatatatttaattatctaaagtaaaaaattataaaaatttaatatttaaaaaatatttttcgagacaaatcaaacaacatctta 12625359  T
Q  155 catactaacatttatatttatatactagttaaaa 188  Q
    ||| |||| |||| |||||||| | |||||||||    
T  12625358 catgctaatatttgtatttatacattagttaaaa 12625325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 63 - 188
Target Start/End: Original strand, 4467579 - 4467707
Alignment:
Q  63 attttgatcgttaatatttttaattgtctatagtaaaacatcataaaatttaatcttttgaaaatatttatcgagacaaatta---agcattttacatac 159  Q
    ||||||| ||||||||| ||||||| |||| ||||||| || ||||||||| |   ||||||||||||| ||||||||||| |   | ||| |||||| |    
T  4467579 attttgaccgttaatatctttaattatctaaagtaaaaaattataaaattttaatatttgaaaatatttgtcgagacaaatcaaacaacatcttacatgc 4467678  T
Q  160 taacatttatatttatatactagttaaaa 188  Q
    ||| |||| |||||||| | |||||||||    
T  4467679 taatatttgtatttatacattagttaaaa 4467707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 57 - 188
Target Start/End: Original strand, 12240230 - 12240366
Alignment:
Q  57 tacacaattttgatcgttaatatttttaattgtctatagt-aaaacatcataaaattt-aatcttttgaaaatatttatcgagacaaatta---agcatt 151  Q
    ||||||||||||| | ||||||| ||||||| |||| ||| |||| || ||||||||| ||| |||||||||||||| ||||||||||| |   | |||     
T  12240230 tacacaattttgaccattaatatctttaattatctaaagtaaaaaaattataaaatttcaatattttgaaaatatttgtcgagacaaatcaaacaacatc 12240329  T
Q  152 ttacatactaacatttatatttatatactagttaaaa 188  Q
    |||||| |||| |||| |||||||| | |||||||||    
T  12240330 ttacatgctaatatttgtatttatacattagttaaaa 12240366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 60 - 176
Target Start/End: Complemental strand, 25918409 - 25918289
Alignment:
Q  60 acaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcattttac 155  Q
    |||||||||| ||||||||| ||||||| |||| ||||||  || |||||| |||||| ||||||| |||||| ||||||||||| |   | ||| ||||    
T  25918409 acaattttgaccgttaatatctttaattatctaaagtaaaggattataaaaatttaatattttgaagatatttgtcgagacaaatcaaacaacatcttac 25918310  T
Q  156 atactaacatttatatttata 176  Q
    || |||| |||||||||||||    
T  25918309 atgctaatatttatatttata 25918289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 77 - 143
Target Start/End: Original strand, 50620756 - 50620822
Alignment:
Q  77 tatttttaattgtctatagtaaaacatcataaaatttaatcttttgaaaatatttatcgagacaaat 143  Q
    ||||||||||| |||| ||||||| || |||||||||||| ||||||||||||||  ||||||||||    
T  50620756 tatttttaattatctaaagtaaaaaattataaaatttaatattttgaaaatatttgccgagacaaat 50620822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 23 - 143
Target Start/End: Complemental strand, 29052303 - 29052183
Alignment:
Q  23 tacatgtcgcattcaactatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaatttaatcttttg 122  Q
    ||||||||||| ||||||| | ||| ||||||| ||||||| ||||  | ||||||| ||||||| | |||| ||||| || ||||||||  || |||||    
T  29052303 tacatgtcgcagtcaactactacacacatgtcaatacacaactttggccattaatatctttaattatatataataaaaaattataaaattagatattttg 29052204  T
Q  123 aaaatatttatcgagacaaat 143  Q
    |||||||| || |||| ||||    
T  29052203 aaaatattcattgagataaat 29052183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 64 - 144
Target Start/End: Original strand, 53816455 - 53816535
Alignment:
Q  64 ttttgatcgttaatatttttaattgtctatagtaaaacatcataaaatttaatcttttgaaaatatttatcgagacaaatt 144  Q
    |||| ||| ||||||||||||||| || ||   |||| || |||||||||||| |||| ||||||||||||||||||||||    
T  53816455 tttttatctttaatatttttaattatccattaaaaaaaattataaaatttaatattttaaaaatatttatcgagacaaatt 53816535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 118 - 193
Target Start/End: Original strand, 55091302 - 55091380
Alignment:
Q  118 ttttgaaaatatttatcgagacaaatta---agcattttacatactaacatttatatttatatactagttaaaatatat 193  Q
    |||||||||||||||||||||||||| |   | ||| |||||||||||||||| |||||||||| || |||||| ||||    
T  55091302 ttttgaaaatatttatcgagacaaatcaaacaacatcttacatactaacatttgtatttatatattaattaaaaaatat 55091380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 186
Target Start/End: Complemental strand, 34316675 - 34316596
Alignment:
Q  107 aaaatttaatcttttgaaaatatttatcgagacaaattaagcattttacatactaacatttatatttatatactagttaa 186  Q
    |||||||||| ||||| ||||||||||||| ||||||  | ||| ||| || ||||||||| |||||||||| |||||||    
T  34316675 aaaatttaatattttgtaaatatttatcgaaacaaatcgaacatcttatatgctaacatttgtatttatatattagttaa 34316596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 188
Target Start/End: Complemental strand, 26170192 - 26170060
Alignment:
Q  61 caattttgatcgttaatatttttaattgtctatagtaaaaca-tcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcattttac 155  Q
    ||||||||| ||||||||| ||||||| || | ||||||| | | |||||| |||||| |||||||||||||| ||||||||||| |   | ||| ||||    
T  26170192 caattttgaccgttaatatctttaattatccaaagtaaaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaatcaaacaacatcttac 26170093  T
Q  156 atactaacatttatatttatatactagttaaaa 188  Q
    || |||| |||| |||||||| | |||||||||    
T  26170092 atgctaatatttgtatttatacattagttaaaa 26170060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 143
Target Start/End: Original strand, 6013084 - 6013157
Alignment:
Q  71 cgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaat 143  Q
    ||||| ||| ||||| |||||||||||||| || |||||| |||||| ||||||||||||||||  ||||||||    
T  6013084 cgttagtatatttaactgtctatagtaaaaaattataaaaatttaatattttgaaaatatttatttagacaaat 6013157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 188
Target Start/End: Complemental strand, 23360406 - 23360249
Alignment:
Q  32 cattcaactatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatt 130  Q
    ||||||||||||| ||  |||| | | ||||| |||||  |||||||| ||||||| |||| | ||||| || |||||| |||||| |||||||||||||    
T  23360406 cattcaactattttacatatgttaatgcacaactttgaaagttaatatctttaattatctaaaataaaaaattataaaaatttaatattttgaaaatatt 23360307  T
Q  131 tatcgagacaaattaagcattttacatactaacatttatatttatatactagttaaaa 188  Q
    | | || |||||| || |||  ||| | | ||||||| |||| ||||| |||||||||    
T  23360306 ttttgaaacaaatcaaacatcatacttgccaacatttgtattcatatattagttaaaa 23360249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 188
Target Start/End: Complemental strand, 30446547 - 30446371
Alignment:
Q  20 aaatacatgtcgcattcaactatttcacgcatgtcactacacaattttgatcgttaatatttttaattg----tctatagtaaaacatcataaaa-ttta 114  Q
    |||||||||| ||  ||||| |||||||  ||| || | || || ||||||||||||||| |||||||     |||| ||||||| || |||||| ||||    
T  30446547 aaatacatgttgctgtcaaccatttcacatatgccaatgcataactttgatcgttaatatctttaattaattatctaaagtaaaaaattataaaaattta 30446448  T
Q  115 atcttttgaaaatatttatcgagacaaatta---agcattttacatactaacatttatatttatatactagttaaaa 188  Q
    || |||||||||||| | ||||||||||| |   | |||||||||  ||||||||| |||||||||| |||| ||||    
T  30446447 atattttgaaaatatatgtcgagacaaatcaaacaacattttacaggctaacatttgtatttatatattagtcaaaa 30446371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 59 - 143
Target Start/End: Complemental strand, 35686614 - 35686529
Alignment:
Q  59 cacaattttgatcgttaatatttttaattgtctatagtaaaacatcat-aaaatttaatcttttgaaaatatttatcgagacaaat 143  Q
    ||||||||||| ||||||||| ||||||| |||| | ||||| || || |||| ||||| |||||||||||||| | |||||||||    
T  35686614 cacaattttgaccgttaatatctttaattatctaaaataaaaaattataaaaaattaatattttgaaaatatttgttgagacaaat 35686529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 3037093 - 3037021
Alignment:
Q  149 attttacatactaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagtaca 221  Q
    ||||||||| |||| |||| |||||||||| |||||||||  ||| || ||  ||||||||||||||||||||    
T  3037093 attttacatgctaatatttgtatttatatattagttaaaaagtatggtcaaagtaagtcatgtgaatagtaca 3037021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 143
Target Start/End: Complemental strand, 20651631 - 20651531
Alignment:
Q  44 tcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaa 142  Q
    ||||| |||||| | ||||||||||| | | ||||||||||||  |||||   |||| || |||||| |||||| |||| ||||||||||||||||||||    
T  20651631 tcacgtatgtcaatgcacaattttgaacttaaatatttttaataatctatcagaaaaaattataaaaatttaatattttaaaaatatttatcgagacaaa 20651532  T
Q  143 t 143  Q
    |    
T  20651531 t 20651531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 140
Target Start/End: Complemental strand, 40682853 - 40682733
Alignment:
Q  20 aaatacatgtcgcattcaactatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaatttaatctt 119  Q
    |||||||||||||| ||||| | ||||  ||| |||||  |||||||||| | |||||||  || |||  ||| || |||| || |||||||||||| ||    
T  40682853 aaatacatgtcgcagtcaaccacttcatacatatcactgtacaattttgaccattaatatcatttattacctaaagcaaaaaattataaaatttaatatt 40682754  T
Q  120 ttgaaaatatttatcgagaca 140  Q
    |  ||||||||||||||||||    
T  40682753 tcaaaaatatttatcgagaca 40682733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 221
Target Start/End: Original strand, 50685242 - 50685419
Alignment:
Q  50 atgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatca-taaaatttaatcttttgaaaatatttatcgagacaaatta--- 145  Q
    |||||| ||||||||||||| | ||||||| ||||||| | |||| ||||| || | |||||||| || ||||||||||||| ||| || ||||| |       
T  50685242 atgtcaatacacaattttgacctttaatatatttaattatatataataaaaaattattaaaatttgatattttgaaaatattcatcaaggcaaatcaaaa 50685341  T
Q  146 -agcattttacatactaaca-tttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagtaca 221  Q
     | ||||||||||  ||||| ||| || ||||||| ||||||||| |||| || ||  ||||  ||||||||||||||    
T  50685342 caacattttacatgataacattttttaattatatattagttaaaaaatatggtcaaagtaagatatgtgaatagtaca 50685419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 73 - 178
Target Start/End: Original strand, 37767025 - 37767136
Alignment:
Q  73 ttaatatttttaattgtctatagtaaaacatcataaaat---ttaatcttttgaaaatatttatcgagacaaattaagc---attttacatactaacatt 166  Q
    ||||||| ||||||| |||| ||||||| || ||||||    ||||| |||||||||||||| ||||||||||| || |   || |||||| ||||||||    
T  37767025 ttaatatgtttaattctctaaagtaaaaaattataaaaaaaattaatattttgaaaatatttgtcgagacaaatcaaacaatatcttacattctaacatt 37767124  T
Q  167 tatatttatata 178  Q
    | ||||||||||    
T  37767125 tgtatttatata 37767136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 171
Target Start/End: Complemental strand, 25633483 - 25633370
Alignment:
Q  59 cacaattttgatcgttaatatttttaattgtctatagtaaaacatcat-aaaatttaatcttttgaaaatatttatcgagacaaattaagcattttacat 157  Q
    ||||| ||||| | ||||||| ||||||| | |||| ||||| || || |||||||||| |||| |||||||| ||| | |||||| || |||  |||||    
T  25633483 cacaactttgaccattaatatctttaattatatataataaaaaattattaaaatttaatattttaaaaatattcatcaaaacaaatcaaacatcatacat 25633384  T
Q  158 actaacatttatat 171  Q
     |||||||||||||    
T  25633383 gctaacatttatat 25633370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 178
Target Start/End: Original strand, 30191588 - 30191651
Alignment:
Q  118 ttttgaaaatatttatcgagacaaattaagc---attttacatactaacatttatatttatata 178  Q
    |||||||||||||||||||||||||| || |   || ||||||  |||||||||||||||||||    
T  30191588 ttttgaaaatatttatcgagacaaatcaaacaatatcttacatgttaacatttatatttatata 30191651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 188
Target Start/End: Complemental strand, 52227180 - 52227099
Alignment:
Q  107 aaaatttaatcttttgaaaatatttatcgagacaaattaagcattttacatactaacatttatatttatatactagttaaaa 188  Q
    ||||||| || ||||||||||||| |||||  ||||| || ||| ||| || ||||||||| |||||||||| ||| |||||    
T  52227180 aaaatttgatattttgaaaatattcatcgaatcaaatcaaccatcttatatgctaacatttgtatttatatattagataaaa 52227099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 143
Target Start/End: Complemental strand, 50205949 - 50205865
Alignment:
Q  60 acaattttgatcgttaatatttttaattgtctatagtaaaacatcat-aaaatttaatcttttgaaaatatttatcgagacaaat 143  Q
    |||||||||||| ||||||||||||||  ||||   ||||| || || |||||||||| |||| ||||||||| |||||| ||||    
T  50205949 acaattttgatcattaatatttttaataatctaatataaaaaattataaaaatttaatattttaaaaatatttgtcgagataaat 50205865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 62 - 218
Target Start/End: Complemental strand, 6766573 - 6766416
Alignment:
Q  62 aattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaattaagcattttacatact 160  Q
    ||||||||  |||||||| ||||||| |||| ||||||| || |||||| |||||| |||||||||||||| ||||||||||| || ||| |||||| ||    
T  6766573 aattttgacagttaatatctttaattttctaaagtaaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaatcaaacatcttacatgct 6766474  T
Q  161 aacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
    || |||| |||||||||| |||||||||  ||| || ||  ||||||| |||||||||    
T  6766473 aatatttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagt 6766416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 60 - 193
Target Start/End: Original strand, 30385204 - 30385338
Alignment:
Q  60 acaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaattta-atcttttgaaaatatttatcgagacaaattaagcattttacata 158  Q
    |||||||||||| ||  ||| ||||||| | |||| ||||| || |||||||||  || |||||||||||||| |||||| ||||||| ||| |||||||    
T  30385204 acaattttgatcattcgtatatttaattatatataataaaaaattataaaattttgatattttgaaaatatttgtcgagagaaattaaacatcttacata 30385303  T
Q  159 ctaacatttatatttatatactagttaaaatatat 193  Q
    ||||||||| |||||||||| ||||||||| ||||    
T  30385304 ctaacatttgtatttatatattagttaaaaaatat 30385338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 30701964 - 30701840
Alignment:
Q  20 aaatacatgtcgcattcaactatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcat-aaaatttaatct 118  Q
    |||||||||||  | ||||| | |||||  |||||| | ||||||||||||||||||||||||||||| |||  ||||||| || || |||||||||| |    
T  30701964 aaatacatgtccaagtcaacaaattcacatatgtcaatgcacaattttgatcgttaatatttttaattatcttaagtaaaaaattataaaaatttaatat 30701865  T
Q  119 tttgaaaatatttatcgagacaaat 143  Q
    ||||||||||||| |||||||||||    
T  30701864 tttgaaaatatttgtcgagacaaat 30701840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 59 - 188
Target Start/End: Complemental strand, 4302322 - 4302192
Alignment:
Q  59 cacaattttgatcgttaatatttttaattgtctatagtaaaaca-tcataaaatttaatcttttgaaaatatttatcgagacaaattaagcattttacat 157  Q
    ||||||||| ||||||||||| ||||||| |||| ||||||| | | | |||| ||||| |||||||||||||| |||| |||||| || ||| ||||||    
T  4302322 cacaattttaatcgttaatatctttaattatctaaagtaaaaaaattaaaaaaattaatattttgaaaatatttgtcgaaacaaatcaaacatcttacat 4302223  T
Q  158 actaacatttatatttatatactagttaaaa 188  Q
     |||| ||||||||||||| | |||||||||    
T  4302222 gctaatatttatatttatacattagttaaaa 4302192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 62 - 218
Target Start/End: Original strand, 6402468 - 6402628
Alignment:
Q  62 aattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcattttacat 157  Q
    ||||||||  |||||||| ||||||| |||| ||||||| || |||||| |||||| |||||||||||||| ||||||||||| |   | ||| ||||||    
T  6402468 aattttgactgttaatatctttaattttctaaagtaaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaatcaaacaacatcttacat 6402567  T
Q  158 actaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
     |||| |||| |||||||||| |||||||||  ||| || || |||||||| |||||||||    
T  6402568 gctaatatttgtatttatatattagttaaaaagtatggtcaaaataagtcaagtgaatagt 6402628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 20 - 218
Target Start/End: Complemental strand, 17306200 - 17305998
Alignment:
Q  20 aaatacatgtcgcattcaactatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatct 118  Q
    |||||||||||  | ||||||| |||||  ||| || | || ||||||||  |||||||| ||||||| |||| ||||||| || |||||| |||||| |    
T  17306200 aaatacatgtccaagtcaactacttcacatatgccaatgcataattttgactgttaatatctttaattttctaaagtaaaaaattataaaaatttaatat 17306101  T
Q  119 tttgaaaatatttatcgagacaaatta---agcattttacatactaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaat 215  Q
    ||||||||||||| ||||||||||| |   | ||| |||||| |||| |||| |||||||||| || ||||||  |||||| ||  ||||||| ||||||    
T  17306100 tttgaaaatatttgtcgagacaaatcaaacaacatcttacatgctaatatttgtatttatatattaattaaaaagtatagtcaaagtaagtcaagtgaat 17306001  T
Q  216 agt 218  Q
    |||    
T  17306000 agt 17305998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 221
Target Start/End: Original strand, 44647729 - 44647934
Alignment:
Q  20 aaatacatgtcgcattcaactatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatct 118  Q
    |||||||  ||||| ||||| ||||||  ||||||| | ||||| ||||| ||||||||| ||||| | | || ||||||| || |||||| |||||| |    
T  44647729 aaatacacatcgcagtcaaccatttcatacatgtcaatgcacaactttgaccgttaatatctttaactatttaaagtaaaaaattataaaaatttaatat 44647828  T
Q  119 tttgaaaatatttatcgagacaaattaagca---ttttacatactaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaat 215  Q
    |||| ||||| ||||||| ||||||| | ||   | |||||| ||||||||| |||||||||| | ||||||| ||||  | || |||||||||||||||    
T  44647829 tttgtaaatagttatcgaaacaaattgaacaacatcttacatgctaacatttgtatttatatatttgttaaaaaatatgatcaaaataagtcatgtgaat 44647928  T
Q  216 agtaca 221  Q
    | ||||    
T  44647929 aataca 44647934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 59 - 188
Target Start/End: Complemental strand, 52024233 - 52024100
Alignment:
Q  59 cacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcatttta 154  Q
    ||||||||||||||||||||| ||||||| |||  ||||||| || |||||| |||||| |||||||||||||| ||||||||||| |   | ||| |||    
T  52024233 cacaattttgatcgttaatatctttaattatcttaagtaaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaatcaaacaacatctta 52024134  T
Q  155 catactaacatttatatttatatactagttaaaa 188  Q
    ||  |||| ||||||||||||| | |||||||||    
T  52024133 cacgctaatatttatatttatacattagttaaaa 52024100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 62 - 218
Target Start/End: Original strand, 11641125 - 11641285
Alignment:
Q  62 aattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcattttacat 157  Q
    ||||||||  |||||||| ||||||| |||| ||||||| || |||||| |||||| |||||||||||||| ||||||||||| |   | ||| ||||||    
T  11641125 aattttgactgttaatatctttaattttctaaagtaaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaatcaaacaacatcttacat 11641224  T
Q  158 actaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
     |||| |||| |||||||||| |||||||||  ||| || ||  ||||||| |||||||||    
T  11641225 gctaatatttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagt 11641285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 62 - 218
Target Start/End: Original strand, 36757544 - 36757704
Alignment:
Q  62 aattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcattttacat 157  Q
    ||||||||  |||||||| ||||||| |||| ||||||| || |||||| |||||| |||||||||||||| ||||||||||| |   | ||| ||||||    
T  36757544 aattttgactgttaatatctttaattttctaaagtaaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaatcaaacaacatcttacat 36757643  T
Q  158 actaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
     |||| |||| |||||||||| |||||||||  ||| || ||  ||||||| |||||||||    
T  36757644 gctaatatttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagt 36757704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 59 - 143
Target Start/End: Complemental strand, 36399305 - 36399220
Alignment:
Q  59 cacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaat 143  Q
    ||||||||||||||||||||| ||||||| |||  ||||||| || |||||| |||||| |||||||||||||| |||||||||||    
T  36399305 cacaattttgatcgttaatatctttaattatcttaagtaaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaat 36399220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 59 - 143
Target Start/End: Original strand, 42367351 - 42367436
Alignment:
Q  59 cacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaat 143  Q
    ||||||||||| ||||||||| ||||||| |||| ||||||| || |||||| |||||| |||||||||||||| |||||||||||    
T  42367351 cacaattttgaccgttaatatctttaattatctaaagtaaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaat 42367436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 59 - 193
Target Start/End: Original strand, 9342700 - 9342838
Alignment:
Q  59 cacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcatttta 154  Q
    ||||||||||| ||||||||| ||||||| |||| | ||||| || |||||| |||||| |||||||||||||| ||||||||||| |   | ||| |||    
T  9342700 cacaattttgaccgttaatatctttaattatctaaactaaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaatcaaacaacatctta 9342799  T
Q  155 catactaacatttatatttatatactagttaaaatatat 193  Q
    ||| |||| |||| |||||||| | ||||||||| ||||    
T  9342800 catgctaatatttgtatttatacattagttaaaaaatat 9342838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 57 - 143
Target Start/End: Complemental strand, 25171362 - 25171276
Alignment:
Q  57 tacacaattttgatcgttaatatttttaattgtctatagtaaaacatcat-aaaatttaatcttttgaaaatatttatcgagacaaat 143  Q
    ||||||||||||| ||||||||| ||||||| |||| ||||||| ||||| |||||||||| |||||||||||||| |||| ||||||    
T  25171362 tacacaattttgaccgttaatatctttaattatctaaagtaaaa-atcataaaaatttaatattttgaaaatatttgtcgaaacaaat 25171276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 143
Target Start/End: Complemental strand, 27292844 - 27292762
Alignment:
Q  62 aattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaat 143  Q
    |||||||| ||||||||| ||||||| |||| ||||||| || |||||| |||||| |||||||||||||| |||||||||||    
T  27292844 aattttgaccgttaatatatttaattatctaaagtaaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaat 27292762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 60 - 188
Target Start/End: Original strand, 42735221 - 42735353
Alignment:
Q  60 acaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcattttac 155  Q
    |||||||||| ||||||||| ||||||| | || ||||||  || |||||| |||||| |||||||||||||| ||||||||||| |   | ||| ||||    
T  42735221 acaattttgaccgttaatatctttaattatttaaagtaaacaattataaaaatttaatattttgaaaatatttgtcgagacaaatcaaacatcatcttac 42735320  T
Q  156 atactaacatttatatttatatactagttaaaa 188  Q
    || |||| |||| |||||||||| |||||||||    
T  42735321 atgctaatatttgtatttatatattagttaaaa 42735353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 61 - 188
Target Start/End: Original strand, 40771829 - 40771960
Alignment:
Q  61 caattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcattttaca 156  Q
    ||||||||| ||||||||| ||||||| || | ||||||| || |||||| |||||| |||||||||||||| ||||||||||| |   | ||| |||||    
T  40771829 caattttgaccgttaatatctttaattatccaaagtaaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaatcaaacaacatcttaca 40771928  T
Q  157 tactaacatttatatttatatactagttaaaa 188  Q
    | |||| |||| |||||||| | |||||||||    
T  40771929 tgctaatatttgtatttatacattagttaaaa 40771960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 143
Target Start/End: Complemental strand, 16888027 - 16887940
Alignment:
Q  57 tacacaattttgatcgttaatatttttaattgtctatagtaaaacatcat-aaaatttaatcttttgaaaatatttatcgagacaaat 143  Q
    |||||||||||||||||| |||| ||||||| ||||||| |||| || || |||| ||||| |||| |||||||||||||| ||||||    
T  16888027 tacacaattttgatcgttgatatctttaattatctatagcaaaaaattataaaaaattaatattttaaaaatatttatcgacacaaat 16887940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 216
Target Start/End: Complemental strand, 9881522 - 9881322
Alignment:
Q  20 aaatacatgtcgcattcaactatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatct 118  Q
    ||||||||| |||| ||| | | | ||| ||||| ||||||||| ||||| | | ||||| ||||||| ||| | |||||  || |||||| |||||| |    
T  9881522 aaatacatgccgcagtcagccactccacacatgttactacacaactttgaccataaatatctttaattatctgtggtaaacaattataaaaatttaatgt 9881423  T
Q  119 tttgaaaatatttatcgagacaaattaagca---ttttacatactaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaat 215  Q
    ||| |||||||||||| ||||||||  | ||   | ||||||  |||||||||||| |||||| |||||||||  ||| ||||| |||||| ||||||||    
T  9881422 tttaaaaatatttatctagacaaatcgaacaacatcttacatgataacatttatatgtatatattagttaaaaattatggttaaaataagttatgtgaat 9881323  T
Q  216 a 216  Q
    |    
T  9881322 a 9881322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 221
Target Start/End: Original strand, 44644375 - 44644576
Alignment:
Q  20 aaatacatgtcgcattcaactatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcat-aaaatttaatct 118  Q
    |||||||  ||||| ||||| ||||||  ||||| | | ||||| ||||||||||||||| ||||| | | || ||||||| || || |||||||||| |    
T  44644375 aaatacacatcgcagtcaaccatttcatacatgttaatgcacaactttgatcgttaatatctttaactatttaaagtaaaaaattataaaaatttaatat 44644474  T
Q  119 tttgaaaatatttatcgagacaaattaagcattttacatactaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
    |||| ||||| ||||||| ||||||| | ||   | ||| ||||||||| |||||||||| | ||||||| ||||  | ||  ||||||||||||||| |    
T  44644475 tttgtaaatagttatcgaaacaaattgaacaacat-catgctaacatttgtatttatatatttgttaaaaaatatgatcaaagtaagtcatgtgaataat 44644573  T
Q  219 aca 221  Q
    |||    
T  44644574 aca 44644576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 218
Target Start/End: Complemental strand, 30003740 - 30003577
Alignment:
Q  60 acaattttgatcgttaatatt-tttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcatttta 154  Q
    |||||||||| |||||||||  ||||||| |||| ||||||| || |||||| |||||| |||||||||||||| || |||||||| |   | ||| |||    
T  30003740 acaattttgaccgttaatatcctttaattatctaaagtaaaaaattataaaaatttaatattttgaaaatatttgtcaagacaaatcaaacaacatctta 30003641  T
Q  155 catactaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
    ||| |||| |||| |||||||| | |||||||||  ||| || ||  ||||||| |||||||||    
T  30003640 catgctaatatttgtatttatacattagttaaaaagtatggtcaaagtaagtcaagtgaatagt 30003577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 63 - 146
Target Start/End: Complemental strand, 26910279 - 26910195
Alignment:
Q  63 attttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaattaa 146  Q
    ||||||| ||||||||| ||||||| |||| ||||||| || |||||| |||||| |||| ||||||||| || |||||||||||    
T  26910279 attttgaccgttaatatctttaattatctaaagtaaaaaattataaaaatttaatattttaaaaatatttgtcaagacaaattaa 26910195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 59 - 218
Target Start/End: Original strand, 38153332 - 38153495
Alignment:
Q  59 cacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaat-taag--catttta 154  Q
    ||||| ||||| ||||||||| ||||||| |||| ||||||| || |||||| |||||| ||||  ||||||||||||| ||||||  |||  ||| |||    
T  38153332 cacaactttgaccgttaatatctttaattatctaaagtaaaaaattataaaaatttaatattttataaatatttatcgaaacaaatcgaagaacatctta 38153431  T
Q  155 catactaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
    |||  |||||||| |||||||||  |||||||||  ||| || |   |||||||||||||||||    
T  38153432 catgataacatttgtatttatatgttagttaaaaagtatggtaacagtaagtcatgtgaatagt 38153495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 36 - 143
Target Start/End: Original strand, 42788575 - 42788682
Alignment:
Q  36 caactatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatc 134  Q
    |||||| |||||  |||||| | ||||||||||| ||||||||| || |||| |||| ||||||| || |||||| |||||| |||| ||||||||| ||    
T  42788575 caactacttcacatatgtcaatgcacaattttgaccgttaatatatt-aattatctaaagtaaaaaattataaaaatttaatattttaaaaatatttgtc 42788673  T
Q  135 gagacaaat 143  Q
    |||||||||    
T  42788674 gagacaaat 42788682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 199
Target Start/End: Original strand, 19711750 - 19711891
Alignment:
Q  62 aattttgatcgttaatatttttaattgtctatagtaaaacatcataaaat-ttaatcttttgaaaatatttatcgagacaaatt---aagcattttacat 157  Q
    |||||| ||| ||||||||||||||| | || | ||||| || ||||||  ||||| ||||| ||||||||||||| |||||||    ||||| ||||||    
T  19711750 aattttaatctttaatatttttaattatttaaaataaaaaattataaaaacttaatattttgtaaatatttatcgaaacaaatttaacagcatcttacat 19711849  T
Q  158 actaacatttatatttatatactagttaaaatatatagttaa 199  Q
     ||| || || |||||||||  ||||||||| ||||||||||    
T  19711850 gctatcacttgtatttatatgttagttaaaaaatatagttaa 19711891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 188
Target Start/End: Complemental strand, 27984799 - 27984629
Alignment:
Q  20 aaatacatgtcgcattcaactatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcat--aaaatttaatc 117  Q
    ||||||||||||||  |||  | | ||| ||||||| ||||||| || |||| ||||||||||||||| | |||| ||||| || ||  |||| || ||     
T  27984799 aaatacatgtcgcagccaatcactgcacacatgtcaatacacaacttcgatcattaatatttttaattatatataataaaaaattataaaaaaattgata 27984700  T
Q  118 ttttgaaaatatttatcgagacaaattaagcattttacatactaacatttatatttatatactagttaaaa 188  Q
    |||||| |||||| ||||| |||||| || ||| |||||  ||||||||| ||||  |||| |||||||||    
T  27984699 ttttgataatattcatcgaaacaaatcaaacatcttacaagctaacatttgtattcgtatattagttaaaa 27984629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 221
Target Start/End: Original strand, 40977504 - 40977709
Alignment:
Q  20 aaatacatgtcgcattcaactatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcat-aaaatttaatct 118  Q
    |||||||||||  | ||||| | ||||| |||| || | |||||||||||  |||||||| ||||||| |||| ||||||| ||  | |||||||||| |    
T  40977504 aaatacatgtccaagtcaaccacttcacacatgccaatgcacaattttgactgttaatatctttaattatctaaagtaaaaaattttaaaaatttaatat 40977603  T
Q  119 tttgaaaatatttatcgagacaaatta---agcattttacatactaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaat 215  Q
    ||| ||||||||| || |||||||| |   | ||| |||||| |||| |||| |||||||| | |||||||||  ||| || ||  | ||||| ||||||    
T  40977604 tttcaaaatatttgtcaagacaaatcaaacaacatcttacatgctaatatttgtatttatacattagttaaaaagtatggtcaaagttagtcaagtgaat 40977703  T
Q  216 agtaca 221  Q
    ||||||    
T  40977704 agtaca 40977709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 60 - 138
Target Start/End: Complemental strand, 21364955 - 21364877
Alignment:
Q  60 acaattttgatcgttaatatttttaattgtctatagtaaaacatcat-aaaatttaatcttttgaaaatatttatcgaga 138  Q
    ||||||||||||||| |||||||| | | |||||||||||| || || |||||||||| |||| ||||||||||| ||||    
T  21364955 acaattttgatcgtttatatttttgagtatctatagtaaaaaattataaaaatttaatatttt-aaaatatttattgaga 21364877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 143
Target Start/End: Original strand, 15912407 - 15912476
Alignment:
Q  74 taatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaat 143  Q
    |||||| ||||||| |||| ||||||| || |||||| |||||| ||| ||||||||||||||||||||||    
T  15912407 taatatatttaattatctaaagtaaaaaattataaaaatttaatattt-gaaaatatttatcgagacaaat 15912476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 188
Target Start/End: Complemental strand, 24321419 - 24321335
Alignment:
Q  107 aaaatttaatcttttgaaaatatttatcgagacaaattaagc---attttacatactaacatttatatttatatactagttaaaa 188  Q
    |||||||||| |||||||||||||| ||||||||||| || |   || |||||| |||| |||| |||||||| | |||||||||    
T  24321419 aaaatttaatattttgaaaatatttgtcgagacaaatcaaacaatatcttacatgctaatatttgtatttatacattagttaaaa 24321335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 50972648 - 50972765
Alignment:
Q  20 aaatacatgtcgcattcaactatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcat-aaaatttaatct 118  Q
    |||||||||||||| |||| || ||||| |||| |  | || ||||||||   ||||||||||||||| |||| ||||||| |  || |||||||||| |    
T  50972648 aaatacatgtcgcagtcaattacttcacacatgccgattcaaaattttgactcttaatatttttaattatctaaagtaaaaaaatataaaaatttaatat 50972747  T
Q  119 tttgaaaatatttatcga 136  Q
    |||| ||||| |||||||    
T  50972748 tttgtaaataattatcga 50972765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 7568638 - 7568674
Alignment:
Q  152 ttacatactaacatttatatttatatactagttaaaa 188  Q
    ||||| ||||||||||||||||||||| |||||||||    
T  7568638 ttacacactaacatttatatttatatattagttaaaa 7568674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 143
Target Start/End: Original strand, 23330556 - 23330592
Alignment:
Q  107 aaaatttaatcttttgaaaatatttatcgagacaaat 143  Q
    |||||||||| |||| |||||||||||||||||||||    
T  23330556 aaaatttaatattttaaaaatatttatcgagacaaat 23330592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 65 - 209
Target Start/End: Original strand, 27579491 - 27579639
Alignment:
Q  65 tttgatcgttaatatttttaattgtctatagtaaaacatcat-aaaatttaatcttttgaaaatatttatcgagacaaattaa---gcattttacatact 160  Q
    ||||||||||||||| ||||||| |||| ||||||| || || |||||||||| |||||||||||||| | ||||||||| ||     || |||||| ||    
T  27579491 tttgatcgttaatatctttaattatctaaagtaaaaaattataaaaatttaatattttgaaaatatttgttgagacaaatcaaattatatcttacatgct 27579590  T
Q  161 aacatttatatttatatactagttaaaatatatagttaagataagtcat 209  Q
    ||||||| |||||||||| ||||||||| ||||||||||  ||||||||    
T  27579591 aacatttgtatttatatattagttaaaaaatatagttaaagtaagtcat 27579639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 107 - 218
Target Start/End: Complemental strand, 6996138 - 6996025
Alignment:
Q  107 aaaatttaatcttttgaaaatatttatcgagacaaattaagca---ttttacatactaacatttatatttatatactagttaaaatatatagttaagata 203  Q
    ||||||| || ||||||||||||| |||||||||||| || ||   ||||||||  ||||||||||||||||||| ||||||||| |||||||||| |||    
T  6996138 aaaatttgatattttgaaaatattcatcgagacaaatcaaacaatattttacatggtaacatttatatttatatattagttaaaaaatatagttaa-ata 6996040  T
Q  204 agtcatgtgaatagt 218  Q
    ||| |||||||||||    
T  6996039 agttatgtgaatagt 6996025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 35 - 216
Target Start/End: Original strand, 5947587 - 5947767
Alignment:
Q  35 tcaactatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaatttaatcttttgaaaatatttatc 134  Q
    ||||||| ||||| ||||||| |||| |||||| ||||||||||| ||||  | ||||| |||||| ||  ||||||||||| |||| ||||||||||||    
T  5947587 tcaactaattcacacatgtcaatacataatttt-atcgttaatatatttagctatctatggtaaaagattgtaaaatttaatattttaaaaatatttatc 5947685  T
Q  135 gagacaaattaagcattttacatactaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaata 216  Q
     |||||||| || ||||||| || || | |||| |||||||||  ||| ||||| |||| || ||  ||||| |||||||||    
T  5947686 aagacaaatcaaacattttatatgcttagatttgtatttatatgttagctaaaaaatattgtcaaagtaagttatgtgaata 5947767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 43 - 218
Target Start/End: Complemental strand, 34112180 - 34112006
Alignment:
Q  43 ttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaa 141  Q
    ||||| ||||||| |  ||||||||||  |||||||| ||||||| |||| ||||||| || |||||| |||||| |||||||||||||| |||||||||    
T  34112180 ttcacacatgtcaatgtacaattttgacggttaatatctttaattatctaaagtaaaaaattataaaaatttaatattttgaaaatatttgtcgagacaa 34112081  T
Q  142 attaagcattttacatactaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
    || ||  || ||||||  ||| |||| |||||||| | |||| |||| ||||||| ||  ||||||| |||||||||    
T  34112080 atcaa--atcttacatgataatatttgtatttatagattagtaaaaaaatatagtcaaagtaagtcaagtgaatagt 34112006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 62 - 218
Target Start/End: Complemental strand, 978281 - 978121
Alignment:
Q  62 aattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcattttacat 157  Q
    ||||||||  |||||||| ||||||| |||| ||||||| || |||||| |||||| |||||||||||||| ||||||||||| |   | ||| ||||||    
T  978281 aattttgactgttaatatctttaattttctaaagtaaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaatcaaacaacatcttacat 978182  T
Q  158 actaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
     |||| |||| |||||||||| |||||||||  ||| || ||  ||||||| |||||||||    
T  978181 gctaatatttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagt 978121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 62 - 218
Target Start/End: Original strand, 14634215 - 14634375
Alignment:
Q  62 aattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcattttacat 157  Q
    ||||||||  |||||||| ||||||| |||| ||||||| || |||||| |||||| |||||||||||||| ||||||||||| |   | ||| ||||||    
T  14634215 aattttgactgttaatatctttaattttctaaagtaaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaatcaaacaacatcttacat 14634314  T
Q  158 actaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
     |||| |||| |||||||||| |||||||||  |||||| ||  ||||||| |||| ||||    
T  14634315 gctaatatttgtatttatatattagttaaaaagtatagtcaaagtaagtcaagtgactagt 14634375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 62 - 218
Target Start/End: Complemental strand, 33387423 - 33387264
Alignment:
Q  62 aattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcattttacat 157  Q
    ||||||||  |||||||| ||||||| |||| ||||||| || |||||| |||||| |||||||||||||| ||||||||||| |   | ||| ||||||    
T  33387423 aattttgactgttaatatctttaattttcta-agtaaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaatcaaacaacatcttacat 33387325  T
Q  158 actaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
     |||| |||| |||||||||| |||||||||  |||||| ||  ||||||| |||||||||    
T  33387324 gctaatatttgtatttatatattagttaaaaagtatagtcaaagtaagtcaagtgaatagt 33387264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 107 - 218
Target Start/End: Original strand, 30354978 - 30355092
Alignment:
Q  107 aaaatttaatcttttgaaaatatttatcgagacaaatta---agcattttacatactaacatttatatttatatactagttaaaatatatagttaagata 203  Q
    |||||||||| |||||||||||||| |||||||||||||   | ||| |||||| |||| |||| |||||||||| |||||||||| ||| |||||  ||    
T  30354978 aaaatttaatattttgaaaatatttgtcgagacaaattaaacaacatcttacatgctaatatttgtatttatatattagttaaaatgtatggttaaagta 30355077  T
Q  204 agtcatgtgaatagt 218  Q
    | ||| |||||||||    
T  30355078 aatcaagtgaatagt 30355092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 60 - 188
Target Start/End: Original strand, 9050632 - 9050764
Alignment:
Q  60 acaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcattttac 155  Q
    |||||||||| ||||||||| ||||||| | || ||||||| || |||||| |||||| |||||||||||||| ||||||||||| |   | ||| ||||    
T  9050632 acaattttgaccgttaatatctttaattatataaagtaaaaaattataaaaatttaatattttgaaaatatttttcgagacaaatcaaacaacatcttac 9050731  T
Q  156 atactaacatttatatttatatactagttaaaa 188  Q
    || |||| |||| |||||||| | |||||||||    
T  9050732 atgctaatatttgtatttatacattagttaaaa 9050764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 143
Target Start/End: Complemental strand, 27109904 - 27109810
Alignment:
Q  50 atgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaat 143  Q
    |||||| | ||||||||||| ||||||||| ||||||| |||| ||||||| || | |||| |||||| |||||||||||||| |||||||||||    
T  27109904 atgtcaatgcacaattttgaccgttaatatctttaattatctaaagtaaaaaattacaaaaatttaatattttgaaaatatttgtcgagacaaat 27109810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 143
Target Start/End: Complemental strand, 40156414 - 40156320
Alignment:
Q  50 atgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcat-aaaatttaatcttttgaaaatatttatcgagacaaat 143  Q
    |||||| | ||||||||||| ||||||||| ||||||| |||| ||||||| || || |||||||||| |||| ||||||||| |||||||||||    
T  40156414 atgtcaatgcacaattttgaccgttaatatctttaattatctaaagtaaaaaattataaaaatttaatatttttaaaatatttgtcgagacaaat 40156320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 72 - 218
Target Start/End: Original strand, 8086098 - 8086248
Alignment:
Q  72 gttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcattttacatactaacattt 167  Q
    |||||||| ||||||| |||| ||||||| || |||||| |||||| |||| ||||||||| ||||||||||| |   | ||| ||||||  ||| ||||    
T  8086098 gttaatatctttaattttctaaagtaaaaaattataaaaatttaatattttaaaaatatttgtcgagacaaatcaaacaacatcttacatgttaatattt 8086197  T
Q  168 atatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
     |||||||||| |||||||||  |||||| ||  ||||||| |||||||||    
T  8086198 gtatttatatattagttaaaaagtatagtcaaagtaagtcaagtgaatagt 8086248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 62 - 188
Target Start/End: Original strand, 9502685 - 9502815
Alignment:
Q  62 aattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcattttacat 157  Q
    ||||||||  |||||||| ||||||| |||  ||||||| || |||||| |||||| |||||||||||||| ||||||||||| |   | ||| ||||||    
T  9502685 aattttgactgttaatatctttaattttctgaagtaaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaatcaaacaacatcttacat 9502784  T
Q  158 actaacatttatatttatatactagttaaaa 188  Q
     |||| |||| |||||||||| |||||||||    
T  9502785 gctaatatttgtatttatatattagttaaaa 9502815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 218
Target Start/End: Original strand, 12456685 - 12456858
Alignment:
Q  49 catgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaattta-atcttttgaaaatatttatcgagacaaattaag 147  Q
    ||||||| ||||||||||||| | ||||||| ||||||  | |||| |||||  | ||||| |||| || |||||||||||| |||| |||||||| ||     
T  12456685 catgtcaatacacaattttgaacattaatatctttaataatatataataaaaatttataaattttatatattttgaaaatatgtatcaagacaaatcaaa 12456784  T
Q  148 ca---ttttacatactaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
    ||   | |||||||||||||||| ||||| |||| ||||||||| ||||  ||||  ||||| |||| ||||||    
T  12456785 caacatcttacatactaacatttgtatttgtatattagttaaaaaatatgattaaagtaagttatgtaaatagt 12456858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 72 - 188
Target Start/End: Original strand, 3422278 - 3422398
Alignment:
Q  72 gttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaat---taagcattttacatactaacattt 167  Q
    |||||||| ||||||| ||| | |||||| || |||||| |||||| |||| |||||||||||| ||||||||   | | ||| |||||| |||||||||    
T  3422278 gttaatatctttaattatctgtggtaaaaaattataaaaatttaatattttaaaaatatttatcaagacaaatcaatcaacatcttacatgctaacattt 3422377  T
Q  168 atatttatatactagttaaaa 188  Q
     |||||||||| |||||||||    
T  3422378 gtatttatatattagttaaaa 3422398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 218
Target Start/End: Complemental strand, 11251321 - 11251158
Alignment:
Q  59 cacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcatttta 154  Q
    ||||||||||| ||| ||||| ||||||| |||| ||||||| ||  ||||| |||||| |||||||||||||| |||||| |||| |   | |||  ||    
T  11251321 cacaattttgaccgtcaatatctttaattatctaaagtaaaaaattctaaaaatttaatattttgaaaatatttgtcgagataaatcaaataacatcgta 11251222  T
Q  155 catactaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
    ||| |||| |||| |||||||| | |||||||||  ||| || || |||||||| |||||||||    
T  11251221 catgctaatatttgtatttatacattagttaaaaagtatggtcaaaataagtcaagtgaatagt 11251158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 59 - 185
Target Start/End: Complemental strand, 7224372 - 7224242
Alignment:
Q  59 cacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcatttta 154  Q
    ||||||||| | ||||||||| ||||||| |||| |||| || |  |||||| |||||| |||||||||||||| ||||||||||| |   | |||||||    
T  7224372 cacaatttttaccgttaatatctttaattatctaaagtataaaaatataaaaatttaatattttgaaaatatttgtcgagacaaatcaaacaacatttta 7224273  T
Q  155 catactaacatttatatttatatactagtta 185  Q
    ||| |||| |||| |||||||| | ||||||    
T  7224272 catgctaatatttgtatttataaattagtta 7224242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 73 - 199
Target Start/End: Complemental strand, 18998879 - 18998750
Alignment:
Q  73 ttaatatttttaattgtctatagtaaaacatcataa-aatttaatcttttgaaaatatttatcgagacaaattaagca---ttttacatactaacattta 168  Q
    ||||||||||||||| | || | ||||| || |||| ||||| || ||||||||||||| ||||| |||||| || ||   | ||||||||||||||||     
T  18998879 ttaatatttttaattatataaa-taaaatattataataatttgatattttgaaaatattcatcgaaacaaatcaaacaacatcttacatactaacatttg 18998781  T
Q  169 tatttatatactagttaaaatatatagttaa 199  Q
    |||||||||| ||||||||| |||| |||||    
T  18998780 tatttatatattagttaaaaaatatggttaa 18998750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 18094097 - 18094220
Alignment:
Q  20 aaatacatgtcgcattcaactatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcat-aaaatttaatct 118  Q
    |||||||||||  | ||||| |||||||  ||| || | ||||||||||| ||||||||| ||||||| |||| | ||||| || || ||||||| || |    
T  18094097 aaatacatgtccaagtcaaccatttcacatatgacaatgcacaattttgaccgttaatatctttaattatctaaactaaaaaattataaaaattttatat 18094196  T
Q  119 tttgaaaatatttatcgagacaaa 142  Q
    |||||||||| || ||||||||||    
T  18094197 tttgaaaatacttgtcgagacaaa 18094220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 189
Target Start/End: Original strand, 33550864 - 33550995
Alignment:
Q  60 acaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaata-tttatcgagacaaattaagcattttacat 157  Q
    |||| ||||||  ||||||| ||||||| |||| ||||||| || |||||| |||||| ||||||||||| |||||| |||||||| || ||| ||||||    
T  33550864 acaactttgattattaatatctttaattatctaaagtaaaaaattataaaaatttaatattttgaaaatattttatcaagacaaatcaaacatcttacat 33550963  T
Q  158 actaacatttatatttatatactagttaaaat 189  Q
       || |||||||||  |||| ||||||||||    
T  33550964 gtcaatatttatattcttatattagttaaaat 33550995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 141
Target Start/End: Original strand, 7002524 - 7002648
Alignment:
Q  20 aaatacatgtcgcattcaactatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaaca---tcataaaatttaat 116  Q
    |||||||||||||||||||| | ||||   |||||| | ||||| |||||||||| |||| ||||||| |||| | ||||| |     | ||||||||||    
T  7002524 aaatacatgtcgcattcaaccacttcataaatgtcaatgcacaactttgatcgttgatatatttaattatctaaactaaaaaaattaaaaaaaatttaat 7002623  T
Q  117 cttttgaaaatatttatcgagacaa 141  Q
     ||||||| ||||||||||||||||    
T  7002624 attttgaatatatttatcgagacaa 7002648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 59 - 143
Target Start/End: Original strand, 33587524 - 33587609
Alignment:
Q  59 cacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaat 143  Q
    ||||||||| |  |||||||| ||||||| |||| ||||||| || |||||| |||||| |||||||||||||| | |||||||||    
T  33587524 cacaatttttactgttaatatctttaattatctaaagtaaaaaattataaaaatttaatattttgaaaatatttgttgagacaaat 33587609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 143
Target Start/End: Complemental strand, 35290859 - 35290823
Alignment:
Q  107 aaaatttaatcttttgaaaatatttatcgagacaaat 143  Q
    |||||||||| ||||||||||||||||||||||||||    
T  35290859 aaaatttaatattttgaaaatatttatcgagacaaat 35290823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 63 - 188
Target Start/End: Original strand, 12007691 - 12007820
Alignment:
Q  63 attttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcattttacata 158  Q
    ||||||| |||| |||| ||||||| |||| ||||||| |   ||||| |||||| |||||||||||||| |||| |||||| |   | ||||||||||     
T  12007691 attttgaccgttcatatctttaattatctaaagtaaaaaaaattaaaaatttaatattttgaaaatatttgtcgaaacaaatcaaacaacattttacatg 12007790  T
Q  159 ctaacatttatatttatatactagttaaaa 188  Q
    ||| ||||| |||||||||| || ||||||    
T  12007791 ctagcatttgtatttatatattaattaaaa 12007820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 109 - 188
Target Start/End: Complemental strand, 17477030 - 17476951
Alignment:
Q  109 aatttaatcttttgaaaatatttatcgagacaaattaagcattttacatactaacatttatatttatatactagttaaaa 188  Q
    ||||| || ||||||||||||||    |||||||| || ||| ||| |||||||||||| |||||||||| |||||||||    
T  17477030 aatttgatattttgaaaatattttataagacaaatcaaacatcttatatactaacatttgtatttatatattagttaaaa 17476951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 143
Target Start/End: Original strand, 3472335 - 3472417
Alignment:
Q  62 aattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaat 143  Q
    ||||||||  |||||||| ||||||| |||| ||||||| || | |||| |||||| |||||||||||||| ||| |||||||    
T  3472335 aattttgactgttaatatctttaattatctaaagtaaaaaattaaaaaaatttaatattttgaaaatatttgtcgcgacaaat 3472417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 193
Target Start/End: Complemental strand, 32017367 - 32017282
Alignment:
Q  107 aaaatttaatcttttgaaaatatttatcgagacaaattaagcattttacatactaacatttatatttatatactagttaaaatatat 193  Q
    ||||||| || |||||||||||||  |  |||||||| || ||| |||||| ||||||||| |||||||||| ||||||||| ||||    
T  32017367 aaaatttgatattttgaaaatattcgtttagacaaatcaa-catcttacatgctaacatttgtatttatatattagttaaaaaatat 32017282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 142
Target Start/End: Complemental strand, 18598778 - 18598654
Alignment:
Q  20 aaatacatgtcgcattcaactatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaaca-tcataaaa-tttaatc 117  Q
    ||||| |||||||| ||||| | ||||| ||||||| |  |||| ||||| ||||||||| || |||| |||| ||||||| | | |||||| ||||||     
T  18598778 aaatagatgtcgcaatcaaccacttcacacatgtcaatgtacaactttgaccgttaatatcttaaattatctaaagtaaaaaaattataaaaatttaata 18598679  T
Q  118 ttttgaaaatatttatcgagacaaa 142  Q
     |||| ||||||||||||| |||||    
T  18598678 ctttgtaaatatttatcgaaacaaa 18598654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 143
Target Start/End: Complemental strand, 35641926 - 35641890
Alignment:
Q  107 aaaatttaatcttttgaaaatatttatcgagacaaat 143  Q
    |||||||||| |||| |||||||||||||||||||||    
T  35641926 aaaatttaatattttaaaaatatttatcgagacaaat 35641890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 62 - 218
Target Start/End: Complemental strand, 6223270 - 6223110
Alignment:
Q  62 aattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcattttacat 157  Q
    ||||||||| |||||||| ||||||| |||| ||||||| || |||||| |||||| |||||||||||||| ||||||||||| |   | ||| ||||||    
T  6223270 aattttgattgttaatatctttaattttctaaagtaaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaatcaaacatcatcttacat 6223171  T
Q  158 actaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
     |||| |||| |||||||||| ||||||||| |||| || ||  ||||||| |||||||||    
T  6223170 gctaatatttgtatttatatattagttaaaaaatatggtcaaagtaagtcaagtgaatagt 6223110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 221
Target Start/End: Original strand, 33228461 - 33228666
Alignment:
Q  20 aaatacatgtcgcattcaactatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaatttaatctt 119  Q
    ||||| |||| ||| ||||| | ||||| ||||||| | ||||| ||||||||||||||| ||||||| |||| | ||||| || |  ||||||||| ||    
T  33228461 aaatatatgttgcagtcaaccacttcacacatgtcaatgcacaactttgatcgttaatatatttaattatctagaataaaaaataa--aaatttaatatt 33228558  T
Q  120 ttgaaaatatttatcgagacaaat---taagcattttacatactaacatttatatttatatactagtta---aaatatatagttaagataagtcatgtga 213  Q
    ||||||||||||||||||||||||     | ||| ||||||| ||| |||||||||||| || | ||||   ||| ||||||| |||||| || ||||||    
T  33228559 ttgaaaatatttatcgagacaaatcgaacaacatcttacatattaatatttatatttatttatttgttagttaaaaatatagtcaagatacgttatgtga 33228658  T
Q  214 atagtaca 221  Q
    ||||||||    
T  33228659 atagtaca 33228666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 33607618 - 33607494
Alignment:
Q  20 aaatacatgtcgcattcaactatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcat-aaaatttaatct 118  Q
    |||||||||||  | | ||||| |||||  |||||| | ||||||||||||||||||||| ||||||| |||| ||||||| || || |||||||||| |    
T  33607618 aaatacatgtccaagttaactacttcacatatgtcaatgcacaattttgatcgttaatatctttaattatctaaagtaaaaaattataaaaatttaatat 33607519  T
Q  119 tttgaaaatatttatcgagacaaat 143  Q
    ||||||||||||| |||||||||||    
T  33607518 tttgaaaatatttgtcgagacaaat 33607494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 59 - 218
Target Start/End: Complemental strand, 7800054 - 7799891
Alignment:
Q  59 cacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcatttta 154  Q
    ||||| ||||| ||||||||| ||||||| |||| ||||||| || |||||| |||||| ||||||||||||||  |||||||||| |   | ||| |||    
T  7800054 cacaactttgaccgttaatatctttaattatctaaagtaaaaaattataaaaatttaatattttgaaaatatttgccgagacaaatcaaacaacatctta 7799955  T
Q  155 catactaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
    ||| ||||||||| |||||||||| |||||||||  ||  || ||  |||||||||||||||||    
T  7799954 catgctaacatttgtatttatatattagttaaaaagtagggtcaaagtaagtcatgtgaatagt 7799891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 59 - 218
Target Start/End: Original strand, 2183015 - 2183175
Alignment:
Q  59 cacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaattaagcattttacat 157  Q
    |||||||||||  |||||||| ||||||| |||| | ||||| || |||||| |||||| |||||||||||||| ||||||||||| || ||| ||||||    
T  2183015 cacaattttgactgttaatatctttaattatctaaaataaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaatcaaacatcttacat 2183114  T
Q  158 actaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
     |||| |||| |||| ||| | |||||||||  ||| || ||  ||||||| |||||||||    
T  2183115 gctaatatttgtattcatacattagttaaaaagtatggtcaaagtaagtcaagtgaatagt 2183175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 193
Target Start/End: Original strand, 9172162 - 9172339
Alignment:
Q  20 aaatacatgtcgcattcaactatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatct 118  Q
    |||||||||||  | ||||| | ||||| |||| || |  |||||||||| ||||||||| ||||||| |||| ||||||| || |||||| |||||| |    
T  9172162 aaatacatgtccaagtcaaccacttcacacatgccaatgtacaattttgaccgttaatatctttaattatctaaagtaaaaaattataaaagtttaatat 9172261  T
Q  119 tttgaaaatatttatcgagacaaatta---agcattttacatactaacatttatatttatatactagttaaaatatat 193  Q
    ||||||||||||||||||| ||||| |   | ||| |||||| ||||| ||| |||||||| | ||||||||| ||||    
T  9172262 tttgaaaatatttatcgaggcaaatcaaacaacatcttacatgctaacttttgtatttatacattagttaaaaaatat 9172339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 62 - 218
Target Start/End: Complemental strand, 5405200 - 5405040
Alignment:
Q  62 aattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcattttacat 157  Q
    ||||||||  |||||||| ||||||| |||| ||||||| || |||||| |||||| |||||||||||||| ||||||||||| |   | ||| ||||||    
T  5405200 aattttgactgttaatatctttaattttctaaagtaaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaatcaaacaacatcttacat 5405101  T
Q  158 actaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
     |||| |||| |||||||||| |||||||||  ||| || ||  ||||||| |||||||||    
T  5405100 gctaatatttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagt 5405040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 62 - 218
Target Start/End: Complemental strand, 7608253 - 7608093
Alignment:
Q  62 aattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcattttacat 157  Q
    ||||||||  |||||||| ||||||| |||| ||||||| || |||||| |||||| |||||||||||||| ||||||||||| |   | ||| ||||||    
T  7608253 aattttgactgttaatatctttaattttctaaagtaaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaatcaaacaacatcttacat 7608154  T
Q  158 actaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
     |||| |||| |||||||||| |||||||||  ||| || ||  ||||||| |||||||||    
T  7608153 gctaatatttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagt 7608093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 62 - 218
Target Start/End: Original strand, 8042080 - 8042240
Alignment:
Q  62 aattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcattttacat 157  Q
    ||||||||  |||||||| ||||||| |||| ||||||| || |||||| |||||| |||||||||||||| ||||||||||| |   | ||| ||||||    
T  8042080 aattttgactgttaatatctttaattttctaaagtaaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaatcaaacaacatcttacat 8042179  T
Q  158 actaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
     |||| |||| |||||||||| |||||||||  ||| || ||  ||||||| |||||||||    
T  8042180 gctaatatttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagt 8042240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 62 - 218
Target Start/End: Original strand, 19141124 - 19141284
Alignment:
Q  62 aattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcattttacat 157  Q
    ||||||||  |||||||| ||||||| |||| ||||||| || |||||| |||||| |||||||||||||| ||||||||||| |   | ||| ||||||    
T  19141124 aattttgactgttaatatctttaattttctaaagtaaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaatcaaacaacatcttacat 19141223  T
Q  158 actaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
     |||| |||| |||||||||| |||||||||  ||| || ||  ||||||| |||||||||    
T  19141224 gctaatatttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagt 19141284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 50 - 143
Target Start/End: Original strand, 36719370 - 36719464
Alignment:
Q  50 atgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcat-aaaatttaatcttttgaaaatatttatcgagacaaat 143  Q
    |||||| | ||||||||||| ||||||||| ||||||| |||| ||||||| || || |||||||||| |||||||||||||| |||||||||||    
T  36719370 atgtcaatgcacaattttgaccgttaatatctttaattatctaaagtaaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaat 36719464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 62 - 218
Target Start/End: Complemental strand, 44365361 - 44365201
Alignment:
Q  62 aattttgatcgttaatatttttaattgtctatagtaaaacatcat-aaaatttaatcttttgaaaatatttatcgagacaaatta---agcattttacat 157  Q
    |||||||| ||||||||| ||||||| |||| ||||||| || || |||||||||| |||||||||||||| ||||||||||| |   | ||| ||||||    
T  44365361 aattttgaccgttaatatctttaattatctaaagtaaaaaattatgaaaatttaatattttgaaaatatttgtcgagacaaatcaaacaacatcttacat 44365262  T
Q  158 actaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
     |||| |||| |||||||| | |||||||||  ||| || ||  ||||||| |||||||||    
T  44365261 gctaatatttgtatttatacattagttaaaaagtatggtcaaagtaagtcaagtgaatagt 44365201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 60 - 217
Target Start/End: Original strand, 13125201 - 13125362
Alignment:
Q  60 acaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaattaagc---attttac 155  Q
    |||||||||||||||||||| ||||||| |  | ||||||| || |||||| |||||| |||| ||||||||||||||||||||| || |   || |||     
T  13125201 acaattttgatcgttaatatctttaattattcaaagtaaaaaattataaaaatttaatattttaaaaatatttatcgagacaaatcaaacaatatcttag 13125300  T
Q  156 atactaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatag 217  Q
    || |||| |||| |||||||| | ||||||||| |||| || ||  ||||||| ||||||||    
T  13125301 atgctaatatttgtatttatacattagttaaaaaatatggtgaaagtaagtcaagtgaatag 13125362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 50 - 188
Target Start/End: Complemental strand, 44645087 - 44644944
Alignment:
Q  50 atgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaaca-tcataaaa-tttaatcttttgaaaatatttatcgagacaaatta-- 145  Q
    |||||| |||||||||||||  |||||||||||||||| | || ||||||| | | |||||| |||||| |||||||||||||| || ||||||||||      
T  44645087 atgtcaatacacaattttgactgttaatatttttaattatttaaagtaaaaaaattataaaaatttaatattttgaaaatatttgtcaagacaaattaaa 44644988  T
Q  146 -agcattttacatactaacatttatatttatatactagttaaaa 188  Q
     | ||| ||| ||  ||| ||||||||||||||| |||||||||    
T  44644987 caacatcttatatgttaatatttatatttatatattagttaaaa 44644944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 179
Target Start/End: Complemental strand, 34248677 - 34248558
Alignment:
Q  60 acaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa--tttaatcttttgaaaatatttatcgagacaaattaagcattttacat 157  Q
    |||| ||||| | ||||||||||||||| |  ||| ||||| || ||||||  ||| || ||||||||||||| |||||||||||| || ||| ||||||    
T  34248677 acaactttgaccattaatatttttaattat--ataataaaaaattataaaaactttgatattttgaaaatattcatcgagacaaatcaaacatcttacat 34248580  T
Q  158 actaacatttatatttatatac 179  Q
     ||||||||| |||||||||||    
T  34248579 gctaacatttgtatttatatac 34248558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 118 - 193
Target Start/End: Complemental strand, 42133896 - 42133821
Alignment:
Q  118 ttttgaaaatatttatcgagacaaattaagcattttacatactaacatttatatttatatactagttaaaatatat 193  Q
    ||||||||||||||||||||| |||| || ||| || ||| ||||||||| |||||||||| ||||||||| ||||    
T  42133896 ttttgaaaatatttatcgagataaatcaaacatctttcatgctaacatttgtatttatatattagttaaaaaatat 42133821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 119 - 222
Target Start/End: Complemental strand, 24252105 - 24252000
Alignment:
Q  119 tttgaaaatatttatcgagacaaattaagca--ttttacatactaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaata 216  Q
    |||||||||||| || ||||||||| || ||   ||||||| ||||||||| |||||||||| ||||||||| |||| || || |||||| |||||||||    
T  24252105 tttgaaaatattcattgagacaaatcaaacaacatttacatgctaacatttgtatttatatattagttaaaaaatatggtcaaaataagttatgtgaata 24252006  T
Q  217 gtacat 222  Q
     |||||    
T  24252005 atacat 24252000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 216
Target Start/End: Original strand, 36177596 - 36177794
Alignment:
Q  20 aaatacatgtcgcattcaactatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatct 118  Q
    ||||||||||| || ||||| | ||||| ||| ||| | ||||| |||||   ||||||| || |||| |||| ||||||| || |||||| |||||| |    
T  36177596 aaatacatgtcacagtcaaccacttcacacatatcaatgcacaactttgacttttaatatcttcaattatctaaagtaaaaaattataaaaatttaatat 36177695  T
Q  119 tttgaaaatatttatcgagacaaattaagcattttacatactaacatttatatttatatactagtt-aaaatatatagttaagataagtcatgtgaata 216  Q
    ||| |||||||||||  |||||||| || ||| ||| ||  ||| |||| |||||||||| ||||| |||| |||| || || |||| |||||||||||    
T  36177696 tttaaaaatatttatttagacaaatcaaacatcttagatgttaatatttttatttatatattagttaaaaaaatatggtcaaaataaatcatgtgaata 36177794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 62 - 188
Target Start/End: Original strand, 11841651 - 11841781
Alignment:
Q  62 aattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcattttacat 157  Q
    |||||||| ||||||||| ||||||| |||| ||||||| || |||||| |||||| |||| ||| ||||| ||||||||||| |   | ||| ||||||    
T  11841651 aattttgaccgttaatatctttaattatctaaagtaaaaaattataaaaatttaatattttaaaagtatttgtcgagacaaatcaaacaacatcttacat 11841750  T
Q  158 actaacatttatatttatatactagttaaaa 188  Q
     |||| |||| |||||||| | |||||||||    
T  11841751 gctaatatttgtatttatacattagttaaaa 11841781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 144
Target Start/End: Complemental strand, 32887122 - 32887027
Alignment:
Q  50 atgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatt 144  Q
    |||||| |||||||  ||||| |||||||| ||||||| |||||| |||||  | |||||| |||||| ||||||||||||||||| ||| |||||    
T  32887122 atgtcaatacacaacgttgattgttaatatctttaattatctataataaaaatttataaaagtttaatattttgaaaatatttatcaagataaatt 32887027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 107 - 193
Target Start/End: Complemental strand, 38292110 - 38292021
Alignment:
Q  107 aaaatttaatcttttgaaaatatttatcgagacaaattaagca---ttttacatactaacatttatatttatatactagttaaaatatat 193  Q
    ||||||| || ||||||||||||| || ||||||||| || ||   | ||||||  |||||||| |||||||||||||||||||| ||||    
T  38292110 aaaatttgatattttgaaaatattcattgagacaaatcaaacaacatcttacatgttaacatttgtatttatatactagttaaaaaatat 38292021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 57 - 188
Target Start/End: Original strand, 44563051 - 44563185
Alignment:
Q  57 tacacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaattaa--gcatttt 153  Q
    ||||||||||||| | ||||||| ||| ||| | |||| ||||| || |||||| ||| || |||||||||||||||| |||| |||| ||   |||| |    
T  44563051 tacacaattttgaccattaatatatttgattatatataataaaaaattataaaaatttgatattttgaaaatatttattgagaaaaatcaaacacattct 44563150  T
Q  154 acatactaacatttatatttatatactagttaaaa 188  Q
    |||| ||||||| | |||||||||| || ||||||    
T  44563151 acatgctaacatatgtatttatatattaattaaaa 44563185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 218
Target Start/End: Original strand, 31610805 - 31610871
Alignment:
Q  152 ttacatactaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
    |||||| ||||||||| |||||||||| ||||||||| | || || || |||||| |||||||||||    
T  31610805 ttacattctaacatttgtatttatatattagttaaaaaaaatggtaaaaataagttatgtgaatagt 31610871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 193
Target Start/End: Original strand, 9006887 - 9006977
Alignment:
Q  107 aaaatttaatcttttgaaaatatttatcgagacaaattaagcatttta----catactaacatttatatttatatactagttaaaatatat 193  Q
    ||||||| || ||||||||||||| |||||||||||| || ||| |||    ||| ||||||||| |||||||| | ||||||||| ||||    
T  9006887 aaaatttgatattttgaaaatattgatcgagacaaatgaaacatcttacatgcatgctaacatttgtatttataaattagttaaaaaatat 9006977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 59 - 143
Target Start/End: Original strand, 100702 - 100787
Alignment:
Q  59 cacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaat 143  Q
    ||||||||||| ||||||||| ||||||| |||| ||||||| || |||||| |||||| |||||||||||||| |||||||||||    
T  100702 cacaattttgaccgttaatatctttaattatctaaagtaaaaaattataaaaatttaatattttgaaaatatttgtcgagacaaat 100787  T

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Target: scaffold0003 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 218
Target Start/End: Original strand, 161883 - 162055
Alignment:
Q  50 atgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcat-aaaatttaatcttttgaaaatatttatcgagacaaatta--- 145  Q
    |||||| | |||||||||||  |||||||| ||||||| |||| ||||||| || || |||||||||| || ||||||||||| |||| ||||||||       
T  161883 atgtcaatgcacaattttgactgttaatatctttaattatctaaagtaaaaaattataaaaatttaatattgtgaaaatatttgtcgaaacaaattaaac 161982  T
Q  146 agcattttacatactaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
    | ||| |||||| |||| |||| |||||||| | |||||||||  ||| || ||  ||||||| |||||||||    
T  161983 aacatcttacatgctaatatttgtatttatacattagttaaaaagtatggtcaatgtaagtcaagtgaatagt 162055  T

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Target: scaffold0595 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0595
Description:

Target: scaffold0595; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 25 - 218
Target Start/End: Complemental strand, 4189 - 3992
Alignment:
Q  25 catgtcgcattcaactatttcacgcatgtcactacacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaatttaatcttttgaa 124  Q
    ||||||||| | ||||| |  ||||||| || || |||| ||||| | | ||||| ||||||| | |||| ||||  || ||||||| | || |||||||    
T  4189 catgtcgcagttaactactctacgcatgccaatatacaaatttgaccatcaatatctttaattatatataataaataattataaaatgtgatattttgaa 4090  T
Q  125 aatatttatcgagacaaat----taagcattttacatactaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
    |||||||||||||||||||     ||  || |||||| ||||||||| |||||||||| ||||||||| |||| || ||  ||||  |||||||||||    
T  4089 aatatttatcgagacaaatcaaaaaataatcttacatgctaacatttgtatttatatattagttaaaaaatatggtcaaagtaagctatgtgaatagt 3992  T

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Target: scaffold0056 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 59 - 218
Target Start/End: Complemental strand, 71167 - 71005
Alignment:
Q  59 cacaattttgatcgttaatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaatta---agcatttta 154  Q
    ||||||||||||||||| ||| ||| ||  | || ||||||| || |||||| |||||| |||||||||||||| | ||||||||| |   | ||| |||    
T  71167 cacaattttgatcgttattatctttgatcatgtaaagtaaaaaattataaaaatttaatattttgaaaatatttgttgagacaaatcaaacaacatctta 71068  T
Q  155 catactaacatttatatttatatactagttaaaatatatagttaagataagtcatgtgaatagt 218  Q
     || |||| |||| |||||||| | ||||||||| |||| || || |||||||| |||||||||    
T  71067 aatgctaatatttgtatttatacattagttaaaa-atatggtcaaaataagtcaagtgaatagt 71005  T

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Target: scaffold0295 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 218
Target Start/End: Original strand, 13821 - 13935
Alignment:
Q  107 aaaatttaatcttttgaaaatatttatcgagacaaatta---agcattttacatactaacatttatatttatatactagttaaaatatatagttaagata 203  Q
    ||||| |||| || ||||||||||| |||||||||||||   | ||| |||||| |||| ||||||||||||| | |||||||||  ||| || ||  ||    
T  13821 aaaatgtaatattgtgaaaatatttgtcgagacaaattaaacaacatcttacatgctaatatttatatttatacattagttaaaaagtatggtcaaagta 13920  T
Q  204 agtcatgtgaatagt 218  Q
    ||||| |||||||||    
T  13921 agtcaagtgaatagt 13935  T

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Target: scaffold0009 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 143
Target Start/End: Original strand, 53490 - 53560
Alignment:
Q  74 taatatttttaattgtctatagtaaaacatcataaaa-tttaatcttttgaaaatatttatcgagacaaat 143  Q
    |||||| | ||||||||||||||| || || |||||| |||||| |||| |||||||||||||| ||||||    
T  53490 taatatatataattgtctatagtataaaattataaaaatttaatattttaaaaatatttatcgaaacaaat 53560  T

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