View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11856_low_43 (Length: 347)
Name: NF11856_low_43
Description: NF11856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11856_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 16 - 339
Target Start/End: Complemental strand, 49024066 - 49023743
Alignment:
| Q |
16 |
gacatcatgctggaatttcatatctcacagtagaattaaccctgagaacatagtaaaccatctatccattctagaaaaatgatgataaacaaaggaaccg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49024066 |
gacatcatgctggaatttcatatctcacagtagaattagccctgagaacatagtaaaccatctatccattctagaaaaatgatgataaacaaaggaacca |
49023967 |
T |
|
| Q |
116 |
tagcacttacagcccaataatgccgatctgaaatatcccaaccaccgtgataacgatgaaatcctcgaagaaaatcaggtctattggtcctatttgccgc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49023966 |
tagcacttacagcccaataatgccgatctgaaatatcccaaccaccgtgataacgatgaaatcctcgaagaaaatcaggtctattggtcctatttgccgc |
49023867 |
T |
|
| Q |
216 |
cagaataagagtattatcacctagtggccctggtgctggagccacttgtgtaacttcattttgccatgaacctatattcactcctcttcctcctgaaaaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49023866 |
cagaataagagtattatcacctagtggccctggtgctggagccacttgtgtaacttcattttgccatgaacctatattcactcctcttcctcctgaaaaa |
49023767 |
T |
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| Q |
316 |
gtggaatcaaacaaagaaatcaca |
339 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
49023766 |
gtggaatcaaacaaagaaatcaca |
49023743 |
T |
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