View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11856_low_44 (Length: 344)
Name: NF11856_low_44
Description: NF11856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11856_low_44 |
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Alignment Details
Target: chr5 (Bit Score: 108; Significance: 3e-54; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 217 - 328
Target Start/End: Complemental strand, 10068016 - 10067905
Alignment:
| Q |
217 |
aactcaaaccaatcctcttcgaaggatggatggccaacgacatcgctccgggaggccaactcaccaccacaaccgacgtcgagaatttccccggcttccc |
316 |
Q |
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| T |
10068016 |
aactcaaaccaatcctcttcgaaggatggatggccaacgacatcgctccgggaggccaactcaccactacaaccgacgtcgagaatttccccggcttccc |
10067917 |
T |
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| Q |
317 |
cgacggcatcct |
328 |
Q |
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|||||||||||| |
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| T |
10067916 |
cgacggcatcct |
10067905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 10068235 - 10068146
Alignment:
| Q |
1 |
tgaaattcagattttgtccaaacaacaactggatcactcttttcaacaaagcgcgaaatctaatctccactcaacgcgcctccgtctctt |
90 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10068235 |
tgaaattcagattttgtccaaacaacaactggatcactcttttcaacaaagcgcgaaatctaatctccactcaacgcgcctccgtctctt |
10068146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 174
Target Start/End: Complemental strand, 10068088 - 10068059
Alignment:
| Q |
145 |
ttaaaaccaagctctgcatcatcggcagcg |
174 |
Q |
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| T |
10068088 |
ttaaaaccaagctctgcatcatcggcagcg |
10068059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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