View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11856_low_45 (Length: 344)
Name: NF11856_low_45
Description: NF11856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11856_low_45 |
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Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 18 - 332
Target Start/End: Complemental strand, 8337359 - 8337046
Alignment:
| Q |
18 |
gctaaggtatgggagataacatttgaacataataccctactgctattttttggtcactcattgattttacttttgtttatgaaaacaaannnnnnnnngt |
117 |
Q |
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| T |
8337359 |
gctaaggtatgggacataacatttgaacataataccctactgctattttttggtcactcattggttttacttttgtttatgaaaacaaatttatttt-gt |
8337261 |
T |
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| Q |
118 |
tacttattcactttaagcttattttacaatattagggccatgatattcaactactcattccaactgcatacaaatctgtttatgacaaaacacttgaagt |
217 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8337260 |
tacttattcactttaagcttattttaccatattagggccatgatattcaactactcattccaactgcatacaaatctgtttatgacaaaacacttgaagt |
8337161 |
T |
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| Q |
218 |
taattctacatataccttaactaactttcaagtggtcaagaatgatgtgttgtttaaagtttctgatcataagtacaagttaatatggactggtggaaca |
317 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8337160 |
taattctacatataccttaactaactttcaagtgctcaagaatgatgtgttgtttaaagtttctgatcataagtacaagttaatatggactggtggaaca |
8337061 |
T |
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| Q |
318 |
actgctattgatgtc |
332 |
Q |
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|||||| |||||||| |
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| T |
8337060 |
actgctgttgatgtc |
8337046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 116 - 332
Target Start/End: Complemental strand, 10234378 - 10234162
Alignment:
| Q |
116 |
gttacttattcactttaagcttattttacaatattagggccatgatattcaactactcattccaactgcatacaaatctgtttatgacaaaacacttgaa |
215 |
Q |
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| T |
10234378 |
gttacttattcactttaagcttattttaccatattagggccatgatattcaagtactcattccaactgcatacaaatctgtttatgacaaaacacttgaa |
10234279 |
T |
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| Q |
216 |
gttaattctacatataccttaactaactttcaagtggtcaagaatgatgtgttgtttaaagtttctgatcataagtacaagttaatatggactggtggaa |
315 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10234278 |
gttaattctacatataccttaactaactttcatgtggtcaagaatgatgtgttgtttaaagtttctgatcataagtacaagttaatatggactggtggaa |
10234179 |
T |
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| Q |
316 |
caactgctattgatgtc |
332 |
Q |
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|||||||| |||||||| |
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| T |
10234178 |
caactgctgttgatgtc |
10234162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 10234637 - 10234550
Alignment:
| Q |
18 |
gctaaggtatgggagataacatttgaacataataccctactgctattttttggtcactcattgattttacttttgtttatgaaaacaa |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||| |
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| T |
10234637 |
gctaaggtatgggagataacatttgaacataataccctactgctattttctggtcactgattggttttacttttgtttatgaaaacaa |
10234550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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