View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11856_low_46 (Length: 337)
Name: NF11856_low_46
Description: NF11856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11856_low_46 |
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Alignment Details
Target: chr6 (Bit Score: 301; Significance: 1e-169; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 3 - 323
Target Start/End: Complemental strand, 1133400 - 1133080
Alignment:
| Q |
3 |
aatcataaaactaacaacatgttgaaataaaattaaaaatttaaaagtatttcattatttgtcagcttaactgttaaaacagaaacacatatgtgcaatg |
102 |
Q |
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| T |
1133400 |
aatcataaaactaacaacatgttgaaataaaattaaaaatttaaaagtatttcattatttgtcagcttaactgttaaaacagaaacacatatgtgcaatg |
1133301 |
T |
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| Q |
103 |
cacttcggaagttcaggtgggacacatgagatgtgacaatctctgtctctattacattcatgaattactgtaatgtaaatcataaaatagttaatgtcaa |
202 |
Q |
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| T |
1133300 |
cacttcggaagttcaggtgggacacatgagatgtgacaatctctgtctctattacattcgtgaattactgtaatgtaaatcataaaatagttaatgtcaa |
1133201 |
T |
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| Q |
203 |
tataagtgatgaaatcttgtgtataaataaagaaaatttgataagatgagaaaatggtgcacgtaaaccttcggctacaacatgaagtaggaaaagatat |
302 |
Q |
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| T |
1133200 |
tataaatgatgaaatcttgtgtataaataaagaaaatttgataagatgagaaaatggtgcacgtagaccttcggctacaatatgaagtaggaaaagatat |
1133101 |
T |
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| Q |
303 |
aacatcataatataaacaaac |
323 |
Q |
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| T |
1133100 |
aacatcgtaatataaacaaac |
1133080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 324
Target Start/End: Complemental strand, 1164864 - 1164811
Alignment:
| Q |
271 |
cttcggctacaacatgaagtaggaaaagatataacatcataatataaacaaact |
324 |
Q |
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| T |
1164864 |
cttcggctataacatgaagtaggaaaagatataggatcatagtataaacaaact |
1164811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 324
Target Start/End: Complemental strand, 1137589 - 1137528
Alignment:
| Q |
263 |
acgtaaaccttcggctacaacatgaagtaggaaaagatataacatcataatataaacaaact |
324 |
Q |
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| T |
1137589 |
acgtaaatctttggctacaacatgaagtaggaaaagatatatgattatagtatagacaaact |
1137528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 324
Target Start/End: Complemental strand, 1150982 - 1150921
Alignment:
| Q |
263 |
acgtaaaccttcggctacaacatgaagtaggaaaagatataacatcataatataaacaaact |
324 |
Q |
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||||||| ||| |||||||||| |||||||||||||||||| || ||| |||| ||||||| |
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| T |
1150982 |
acgtaaatctttggctacaacacgaagtaggaaaagatatatgattatagtatagacaaact |
1150921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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