View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11856_low_47 (Length: 333)
Name: NF11856_low_47
Description: NF11856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11856_low_47 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 313
Target Start/End: Complemental strand, 35409114 - 35408826
Alignment:
| Q |
19 |
ggagatacaatgagcacaagcaatacttgagtccaaatcagaggagtaaacacgnnnnnnncgaaagaggcaacccctcacggctcacaaacgagccgtg |
118 |
Q |
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| T |
35409114 |
ggagatacaatgagcacaagcaatacttgagtccaaatcagaggagtaaacacgaaaaaaacgaaagaggcaacccctcacggctcacaaacgagccgtg |
35409015 |
T |
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| Q |
119 |
tgggagcaaaaaattatcatgaattaggggcactttggttttccttccttagttttccagttgttatagcacggatcacattcttgtttgttgccataag |
218 |
Q |
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|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
35409014 |
tgggagcaaaaaat---catgaattaggggcacttcggttttccttccttagttttccagttgttatagcacgga---cattcttgtttgttgccataag |
35408921 |
T |
|
| Q |
219 |
ttccagatggaacacacaaacattttgcacaacactttttgcagaagaacaaacacggcttcttgtgagaagtctttgaacatcgatgatcacaa |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35408920 |
ttccagatggaacacacaaacattttgcacaacactttttgcagaagaacaaacacggcttcttgtgagaagtctttgaacatcgatgatcacaa |
35408826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 134 - 241
Target Start/End: Original strand, 20872007 - 20872111
Alignment:
| Q |
134 |
atcatgaattaggggcactttggttttccttccttagttttccagttgttatagcacggatcacattcttgtttgttgccataagttccagatggaacac |
233 |
Q |
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| T |
20872007 |
atcatcaactaggggcattttggatttccttcttgagttttccagttgttatagcatgg---acactcttccttgttaccataagttccggatgggacac |
20872103 |
T |
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| Q |
234 |
acaaacat |
241 |
Q |
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| T |
20872104 |
acaaacat |
20872111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 140 - 252
Target Start/End: Complemental strand, 16095355 - 16095246
Alignment:
| Q |
140 |
aattaggggcactttggttttccttccttagttttccagttgttatagcacggatcacattcttgtttgttgccataagttccagatggaacacacaaac |
239 |
Q |
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|||||||||||||| ||| ||||| |||| |||||||||| |||||||| || |||||||| ||||| ||||| ||||| ||||| ||||| |||| |
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| T |
16095355 |
aattaggggcacttgggtcctcctttcttatttttccagttattatagcatgg---acattcttccttgttaccatatgttcccgatgggacacataaac |
16095259 |
T |
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| Q |
240 |
attttgcacaaca |
252 |
Q |
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| T |
16095258 |
actttgcacaaca |
16095246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 252
Target Start/End: Original strand, 16005809 - 16005918
Alignment:
| Q |
140 |
aattaggggcactttggttttccttccttagttttccagttgttatagcacggatcacattcttgtttgttgccataagttccagatggaacacacaaac |
239 |
Q |
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|||||||||||||| ||| ||| | |||| || ||||||| | |||||| ||| |||||||| ||||| || || ||||| |||||||||||||||| |
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| T |
16005809 |
aattaggggcacttgggtcctccattcttatttctccagttatcatagcatgga---cattcttgcttgttaccgtatgttcccgatggaacacacaaac |
16005905 |
T |
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| Q |
240 |
attttgcacaaca |
252 |
Q |
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| T |
16005906 |
actttgcacaaca |
16005918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 16047070 - 16047030
Alignment:
| Q |
212 |
ccataagttccagatggaacacacaaacattttgcacaaca |
252 |
Q |
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| T |
16047070 |
ccatatgttcctgatgggacacacaaacattttgcacaaca |
16047030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 16100221 - 16100181
Alignment:
| Q |
212 |
ccataagttccagatggaacacacaaacattttgcacaaca |
252 |
Q |
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| T |
16100221 |
ccatatgttcctgatgggacacacaaacattttgcacaaca |
16100181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 312
Target Start/End: Complemental strand, 9843732 - 9843555
Alignment:
| Q |
134 |
atcatgaattaggggcactttggttttccttcctt-agttttccagttgttatagcacggatcacattcttgtttgttgcca-taagttccagatggaac |
231 |
Q |
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||||| |||||||||||||| || |||||| || |||| |||||||||||||||||||| || |||| ||||| | ||||| || ||||| || |
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| T |
9843732 |
atcatcaattaggggcacttcggatttcctcttttgagttgtccagttgttatagcacgga---cactcttccttgtttactctaagtccctgatgggac |
9843636 |
T |
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| Q |
232 |
acacaaacattttgcacaacactttttgcagaagaacaaacacggcttcttgtgagaagtctttgaacatcgatgatcaca |
312 |
Q |
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|||||||||| |||||| ||||| ||||| || ||||| || |||||| | ||| ||||| ||||||||||| |||||| |
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| T |
9843635 |
acacaaacatgttgcactgcacttgttgcaaaaaaacaagcatggcttcatatgatgagtctgtgaacatcgataatcaca |
9843555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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