View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11856_low_48 (Length: 329)
Name: NF11856_low_48
Description: NF11856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11856_low_48 |
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Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 12 - 314
Target Start/End: Complemental strand, 7224215 - 7223913
Alignment:
| Q |
12 |
agagagattcaatatatttcgttctaggtctaggaagatttcttatagtaagcnnnnnnncagtgttagtgatgatgttgaattgataaagcagcagaat |
111 |
Q |
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| T |
7224215 |
agagagattcaatatatttggttctaggtctaggaagatttcttatagtaagcaaaaaaacagtgttagtgatgatgctgaattgataaagcagcagaat |
7224116 |
T |
|
| Q |
112 |
gaatttcaacagtatgaacatacccccgaatttctttcaggaggtatgtgtttctccgcatttggtggttgctctactttctacactacgaaactgggag |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
7224115 |
gaatttcaacagtatgaacatacccccgaatttctttcaggaggtatgtgtttctccgcatttggtggttgctccactttctacactacgaaactgggag |
7224016 |
T |
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| Q |
212 |
cgcgaatttgaaagatgggcacctcaaatgaatgttgtatgtatacttgacttattagtttcattttttatttatgtatatatgcttttaatgtatgtta |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7224015 |
cgcgaatttgaaagatgggcacctcaaatgaatgttgtatgtatacttgacttattagtttcattttttatttatgtatatatgcttttaatgtatgtta |
7223916 |
T |
|
| Q |
312 |
att |
314 |
Q |
| |
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||| |
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| T |
7223915 |
att |
7223913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 163 - 314
Target Start/End: Complemental strand, 2918166 - 2918015
Alignment:
| Q |
163 |
ttctccgcatttggtggttgctctactttctacactacgaaactgggagcgcgaatttgaaagatgggcacctcaaatgaatgttgtatgtatacttgac |
262 |
Q |
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|||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2918166 |
ttctccacatttggtggttgctccactttctacactacgaaactgggagcgcgaatttgaaagatgggcacctcaaatgaatgttgtatgtatacttgac |
2918067 |
T |
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| Q |
263 |
ttattagtttcattttttatttatgtatatatgcttttaatgtatgttaatt |
314 |
Q |
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| T |
2918066 |
ttcttagtttcattttttatttatgtatatatgcttttaatgtatgttaatt |
2918015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 12 - 164
Target Start/End: Complemental strand, 2918699 - 2918547
Alignment:
| Q |
12 |
agagagattcaatatatttcgttctaggtctaggaagatttcttatagtaagcnnnnnnncagtgttagtgatgatgttgaattgataaagcagcagaat |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
2918699 |
agagagattcaatatatttcgttctaggtctaggaagatttcttattgtaagcaaaaaggcagtgttagtgatgatgctgaattgataaagcagcagaaa |
2918600 |
T |
|
| Q |
112 |
gaatttcaacagtatgaacatacccccgaatttctttcaggaggtatgtgttt |
164 |
Q |
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| T |
2918599 |
gaatttcaacagtatgaacatagccccgaatttctttcagggggtatgtgttt |
2918547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 174 - 256
Target Start/End: Original strand, 49038900 - 49038982
Alignment:
| Q |
174 |
tggtggttgctctactttctacactacgaaactgggagcgcgaatttgaaagatgggcacctcaaatgaatgttgtatgtata |
256 |
Q |
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|||||||||||| |||||| ||||| ||||||||||| || ||||||| || |||||| |||||||||||||||||||||||| |
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| T |
49038900 |
tggtggttgctccactttcaacactgcgaaactgggaacgtgaatttgcaacatgggcccctcaaatgaatgttgtatgtata |
49038982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 158
Target Start/End: Original strand, 49038090 - 49038158
Alignment:
| Q |
90 |
tgaattgataaagcagcagaatgaatttcaacagtatgaacatacccccgaatttctttcaggaggtat |
158 |
Q |
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|||||||| || |||||||| |||||||| ||||||||||||| ||| || ||||||||||| ||||| |
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| T |
49038090 |
tgaattgaagaaacagcagaaagaatttcatcagtatgaacatagccctgagtttctttcaggtggtat |
49038158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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