View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11856_low_49 (Length: 327)
Name: NF11856_low_49
Description: NF11856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11856_low_49 |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 19 - 322
Target Start/End: Complemental strand, 42834707 - 42834404
Alignment:
| Q |
19 |
actccgcagttcatttcttaaagattcaatttcaacttttgatatcttgagctttttgctggctatctcaagttgttttaccaaatttgtaatgttggag |
118 |
Q |
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| T |
42834707 |
actccgcagttcatttcttaaagattcaatttccacttttgatatcttgagctttttgctggctacctcaagttgttttaccaaatttgtaatgttggag |
42834608 |
T |
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| Q |
119 |
acatactctggaatatactctggaatatgagtactcaatttagcagtttgtttttgcaactcctcgtctttcaaattaaattcttctaaaagctcttttt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42834607 |
acatactctggaatatactctggaatatgagtactcaatttagcagtttgtttttgcaactcctcgtctttcaaattaaattcttctaaaagctcttttt |
42834508 |
T |
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| Q |
219 |
gtttcctcaactctttcttttttagattcaattcttcgctcacattatctagttgaccctcaccattcccaacttggaccttcaactttatattctctgc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
42834507 |
gtttcctcaactctttcttttttagattcaattcttcgctcacattatctagttgaccctcaccattcccaacttggaccttcaactttatattctcttc |
42834408 |
T |
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| Q |
319 |
ttct |
322 |
Q |
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|||| |
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| T |
42834407 |
ttct |
42834404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 42819461 - 42819413
Alignment:
| Q |
135 |
actctggaatatgagtactcaatttagcagtttgtttttgcaactcctc |
183 |
Q |
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| T |
42819461 |
actctgaaatatgagtatccaattcagcagtttgtttttgcaactcctc |
42819413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 267
Target Start/End: Complemental strand, 42843369 - 42843301
Alignment:
| Q |
199 |
ttcttctaaaagctctttttgtttcctcaactctttcttttttagattcaattcttcgctcacattatc |
267 |
Q |
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| T |
42843369 |
ttcttttaaaagctccttttgtttattcaactccttctctttcaggttcaattctttgctcacattatc |
42843301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 273 - 321
Target Start/End: Complemental strand, 42843178 - 42843130
Alignment:
| Q |
273 |
gaccctcaccattcccaacttggaccttcaactttatattctctgcttc |
321 |
Q |
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||||||||| | || ||||||| ||||||||||||||||||||| |||| |
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| T |
42843178 |
gaccctcactactctcaacttgaaccttcaactttatattctcttcttc |
42843130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 310
Target Start/End: Complemental strand, 12627892 - 12627792
Alignment:
| Q |
210 |
gctctttttgtttcctcaactctttcttttttagattcaattcttcgctcacattatctagttgaccctcaccattcccaacttggaccttcaactttat |
309 |
Q |
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|||||||| |||| | || ||||| || ||| || |||| |||||||| ||||||||| || | |||||||| |||| ||| || |||||||||||||| |
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| T |
12627892 |
gctcttttagtttacgcacctcttcctctttcagcttcagttcttcgcgcacattatcaagctcaccctcactattctcaatttcaaccttcaactttat |
12627793 |
T |
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| Q |
310 |
a |
310 |
Q |
| |
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| |
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| T |
12627792 |
a |
12627792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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