View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11856_low_50 (Length: 323)

Name: NF11856_low_50
Description: NF11856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11856_low_50
NF11856_low_50
[»] chr4 (29 HSPs)
chr4 (15-214)||(6316495-6316694)
chr4 (227-291)||(30847981-30848045)
chr4 (211-298)||(10303494-10303581)
chr4 (231-289)||(10401399-10401457)
chr4 (211-276)||(48226705-48226771)
chr4 (238-291)||(28031810-28031863)
chr4 (211-291)||(836218-836298)
chr4 (225-289)||(23154594-23154658)
chr4 (211-289)||(35287490-35287568)
chr4 (211-289)||(54857598-54857676)
chr4 (211-276)||(1162924-1162989)
chr4 (228-289)||(13556690-13556751)
chr4 (228-292)||(23160037-23160101)
chr4 (219-275)||(25783440-25783496)
chr4 (230-278)||(40546610-40546658)
chr4 (211-290)||(3936626-3936705)
chr4 (234-289)||(11364929-11364984)
chr4 (211-278)||(13434884-13434951)
chr4 (234-293)||(19854561-19854620)
chr4 (246-293)||(36061399-36061446)
chr4 (211-289)||(37725704-37725782)
chr4 (211-289)||(43034325-43034403)
chr4 (246-291)||(29681475-29681520)
chr4 (211-284)||(56551575-56551648)
chr4 (230-298)||(19479479-19479547)
chr4 (230-290)||(20383487-20383547)
chr4 (225-265)||(31138990-31139030)
chr4 (245-293)||(31780741-31780789)
chr4 (213-289)||(37081219-37081295)
[»] chr5 (25 HSPs)
chr5 (211-289)||(34191433-34191511)
chr5 (212-289)||(4040371-4040448)
chr5 (211-293)||(37791146-37791228)
chr5 (211-289)||(35270664-35270742)
chr5 (229-293)||(10704332-10704396)
chr5 (221-289)||(22619874-22619942)
chr5 (245-288)||(5551298-5551341)
chr5 (209-293)||(14188316-14188400)
chr5 (231-291)||(20927637-20927697)
chr5 (237-289)||(31591546-31591598)
chr5 (211-298)||(18331698-18331785)
chr5 (230-289)||(22538824-22538883)
chr5 (226-289)||(27903113-27903176)
chr5 (226-289)||(41633615-41633678)
chr5 (230-289)||(42473894-42473953)
chr5 (211-278)||(43135011-43135078)
chr5 (227-289)||(22394035-22394097)
chr5 (211-289)||(22665186-22665264)
chr5 (211-289)||(24408495-24408573)
chr5 (211-289)||(43358260-43358338)
chr5 (226-287)||(776683-776743)
chr5 (246-283)||(24158984-24159021)
chr5 (213-289)||(2839798-2839874)
chr5 (211-291)||(6345037-6345116)
chr5 (242-278)||(18930358-18930394)
[»] chr7 (23 HSPs)
chr7 (211-291)||(44406839-44406919)
chr7 (212-289)||(18378402-18378480)
chr7 (211-289)||(48103657-48103735)
chr7 (228-289)||(35224118-35224179)
chr7 (213-289)||(7670434-7670510)
chr7 (211-289)||(18505644-18505718)
chr7 (213-289)||(19626510-19626586)
chr7 (213-289)||(46737785-46737861)
chr7 (231-298)||(1079695-1079762)
chr7 (211-289)||(36121651-36121730)
chr7 (210-288)||(47342416-47342494)
chr7 (228-289)||(9690313-9690374)
chr7 (245-289)||(35103496-35103540)
chr7 (226-289)||(28200383-28200446)
chr7 (230-293)||(43539106-43539169)
chr7 (221-287)||(24027053-24027118)
chr7 (256-289)||(4495824-4495857)
chr7 (228-289)||(39280818-39280879)
chr7 (213-289)||(3536239-3536315)
chr7 (211-283)||(10421980-10422052)
chr7 (225-265)||(11274917-11274957)
chr7 (245-289)||(13955480-13955524)
chr7 (231-283)||(37307877-37307929)
[»] chr3 (21 HSPs)
chr3 (211-290)||(7202899-7202978)
chr3 (211-286)||(41030168-41030243)
chr3 (230-300)||(9598428-9598498)
chr3 (225-286)||(47536477-47536537)
chr3 (213-289)||(4332652-4332728)
chr3 (230-289)||(3582782-3582841)
chr3 (230-289)||(22722402-22722461)
chr3 (211-289)||(14827525-14827603)
chr3 (211-285)||(38034792-38034866)
chr3 (211-293)||(38130942-38131024)
chr3 (230-289)||(10922310-10922369)
chr3 (211-289)||(24120403-24120482)
chr3 (228-287)||(28430565-28430624)
chr3 (219-289)||(23316356-23316426)
chr3 (211-289)||(28244087-28244165)
chr3 (231-289)||(47943298-47943356)
chr3 (245-289)||(19210335-19210379)
chr3 (213-289)||(21628873-21628949)
chr3 (249-289)||(22462117-22462157)
chr3 (230-278)||(27065734-27065782)
chr3 (213-289)||(48531278-48531353)
[»] chr8 (24 HSPs)
chr8 (213-289)||(24023400-24023476)
chr8 (211-289)||(8461819-8461897)
chr8 (211-289)||(41324114-41324192)
chr8 (212-289)||(8544583-8544660)
chr8 (211-275)||(22504273-22504336)
chr8 (214-290)||(32051518-32051594)
chr8 (211-298)||(16340317-16340404)
chr8 (230-288)||(43330257-43330315)
chr8 (227-284)||(2508610-2508667)
chr8 (211-278)||(7553690-7553757)
chr8 (246-289)||(18638100-18638143)
chr8 (210-293)||(18942914-18942997)
chr8 (230-289)||(33105391-33105450)
chr8 (211-278)||(33743586-33743653)
chr8 (211-289)||(10601763-10601841)
chr8 (211-289)||(25136827-25136905)
chr8 (211-265)||(43778043-43778097)
chr8 (256-289)||(4805794-4805827)
chr8 (228-289)||(26885638-26885699)
chr8 (245-289)||(5448447-5448491)
chr8 (230-278)||(18533680-18533728)
chr8 (245-281)||(19716140-19716176)
chr8 (225-289)||(29716697-29716761)
chr8 (221-289)||(35103106-35103174)
[»] scaffold0011 (2 HSPs)
scaffold0011 (211-289)||(185263-185341)
scaffold0011 (230-298)||(7713-7781)
[»] chr6 (20 HSPs)
chr6 (211-293)||(26356064-26356146)
chr6 (211-289)||(34701147-34701225)
chr6 (211-289)||(26320547-26320624)
chr6 (230-287)||(8637439-8637496)
chr6 (211-294)||(14049867-14049950)
chr6 (211-278)||(14429111-14429178)
chr6 (211-293)||(655732-655814)
chr6 (211-289)||(21296758-21296835)
chr6 (211-289)||(30579859-30579937)
chr6 (245-298)||(12700438-12700491)
chr6 (232-293)||(24167894-24167955)
chr6 (211-267)||(1606657-1606713)
chr6 (245-289)||(9581966-9582010)
chr6 (234-289)||(9111047-9111102)
chr6 (229-288)||(24324189-24324248)
chr6 (231-289)||(5937632-5937690)
chr6 (211-289)||(32053788-32053866)
chr6 (245-298)||(12735260-12735313)
chr6 (230-266)||(8809329-8809365)
chr6 (215-283)||(15060916-15060984)
[»] scaffold0160 (1 HSPs)
scaffold0160 (220-289)||(22911-22980)
[»] chr1 (27 HSPs)
chr1 (211-288)||(23203323-23203400)
chr1 (210-293)||(47340783-47340866)
chr1 (217-278)||(15668509-15668570)
chr1 (226-278)||(2596938-2596990)
chr1 (211-286)||(5503748-5503823)
chr1 (210-289)||(26998604-26998683)
chr1 (218-289)||(50040356-50040427)
chr1 (211-289)||(44860866-44860944)
chr1 (230-291)||(33153618-33153679)
chr1 (230-289)||(15892797-15892857)
chr1 (225-289)||(25532973-25533037)
chr1 (213-289)||(41769800-41769876)
chr1 (231-283)||(47835813-47835864)
chr1 (211-278)||(6000126-6000193)
chr1 (230-293)||(23524820-23524883)
chr1 (230-293)||(33153882-33153945)
chr1 (211-289)||(11701966-11702044)
chr1 (243-289)||(13673545-13673591)
chr1 (226-288)||(52262164-52262226)
chr1 (230-287)||(12268986-12269043)
chr1 (211-268)||(28798732-28798789)
chr1 (231-292)||(28832174-28832235)
chr1 (211-284)||(52086114-52086187)
chr1 (245-289)||(20481100-20481144)
chr1 (245-293)||(25086479-25086527)
chr1 (229-289)||(35308185-35308245)
chr1 (245-293)||(48100718-48100766)
[»] chr2 (29 HSPs)
chr2 (213-293)||(11551164-11551244)
chr2 (230-288)||(12751258-12751316)
chr2 (209-287)||(36474764-36474842)
chr2 (211-285)||(42347672-42347746)
chr2 (211-292)||(10811065-10811146)
chr2 (213-293)||(13100249-13100329)
chr2 (211-289)||(30019923-30020000)
chr2 (211-289)||(30040695-30040772)
chr2 (211-289)||(30110173-30110250)
chr2 (211-289)||(30234833-30234910)
chr2 (211-292)||(31397772-31397853)
chr2 (213-289)||(29599939-29600015)
chr2 (245-289)||(31582186-31582230)
chr2 (211-274)||(4180712-4180775)
chr2 (231-278)||(36193947-36193994)
chr2 (219-289)||(21929471-21929540)
chr2 (211-289)||(26999110-26999188)
chr2 (211-289)||(28771582-28771660)
chr2 (243-289)||(32887359-32887405)
chr2 (231-289)||(37132983-37133041)
chr2 (211-265)||(42791319-42791373)
chr2 (246-288)||(43424660-43424702)
chr2 (214-283)||(744529-744598)
chr2 (245-290)||(38603981-38604026)
chr2 (211-300)||(41356141-41356230)
chr2 (232-289)||(42714439-42714496)
chr2 (213-289)||(346109-346185)
chr2 (213-289)||(44496685-44496761)
chr2 (230-298)||(45032684-45032752)
[»] scaffold0121 (1 HSPs)
scaffold0121 (230-286)||(3577-3634)
[»] scaffold0136 (1 HSPs)
scaffold0136 (225-289)||(9529-9593)
[»] scaffold0118 (1 HSPs)
scaffold0118 (211-289)||(40310-40389)
[»] scaffold0021 (1 HSPs)
scaffold0021 (211-293)||(161137-161219)
[»] scaffold0006 (1 HSPs)
scaffold0006 (243-289)||(171159-171205)
[»] scaffold0012 (1 HSPs)
scaffold0012 (249-289)||(118819-118859)


Alignment Details
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 15 - 214
Target Start/End: Original strand, 6316495 - 6316694
Alignment:
Q  15 gagaaggggcataaaagttttttccaaaggaaaggtagctatctatccatgttgctaatgcctgcgctgcgactgtgtcctctgttctcatgacaaagac 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6316495 gagaaggggcataaaagttttttccaaaggaaaggtagctatctattcatgttgctaatgcctgcgctgcgactgtgtcctctgttctcaagacaaagac 6316594  T
Q  115 acatagccatttgggaaggggatacaaatagtacatagcaggcagcataaatttaaaactatgccacatgctcgataataatgacataaaatagagtttt 214  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  6316595 acatagccattagggaaggggatacaaatagtacatagcaggcagcataaatttaaaactatgccgcatgcttgataataatgacataaaatagagtttt 6316694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 227 - 291
Target Start/End: Original strand, 30847981 - 30848045
Alignment:
Q  227 ggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcacaa 291  Q
    ||||||||||||||||| |||||||||| |||||||||| | ||||||||||  |||||||||||    
T  30847981 ggagtttgaacctcggaccttgcatattttatgcattgtccaaaccaactgagttaagctcacaa 30848045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 298
Target Start/End: Original strand, 10303494 - 10303581
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcacaagggcaaa 298  Q
    ||||||||||||| |||  ||| ||||| ||||||||||||||| |||||||||| |  ||||||||| |||||||||| ||| ||||    
T  10303494 ttttttggtagtggccgaggttcgaaccccggatcttgcatattttatgcattgtccttaccaactgagctaagctcacgaggacaaa 10303581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 231 - 289
Target Start/End: Original strand, 10401399 - 10401457
Alignment:
Q  231 tttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    ||||||||  ||| |||||||||||||||||||||||  ||||||||||||||||||||    
T  10401399 tttgaaccctggaccttgcatattgtatgcattgttcataccaactgaactaagctcac 10401457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 211 - 276
Target Start/End: Complemental strand, 48226771 - 48226705
Alignment:
Q  211 ttttttgg-tagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaact 276  Q
    |||||||| ||||| |||||||||||||| |||| |||||||||| |||||||||||||||| ||||    
T  48226771 ttttttggatagtggccggagtttgaaccccggaccttgcatattttatgcattgttccaacgaact 48226705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 28031863 - 28031810
Alignment:
Q  238 ctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcacaa 291  Q
    |||||| |||||||||| ||||||||||||||||||||||| |||| |||||||    
T  28031863 ctcggaccttgcatattttatgcattgttccaaccaactgagctaaactcacaa 28031810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 211 - 291
Target Start/End: Original strand, 836218 - 836298
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcacaa 291  Q
    ||||||||| |||  |||||||||||||||||| |||||||||  | |||||||| || ||||||||| ||||||| ||||    
T  836218 ttttttggtggtggtcggagtttgaacctcggaccttgcatatattttgcattgtccctaccaactgagctaagcttacaa 836298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 225 - 289
Target Start/End: Complemental strand, 23154658 - 23154594
Alignment:
Q  225 ccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    |||| ||||||||  || |||||||||||| ||||||||||| ||||||||||| ||||||||||    
T  23154658 ccggggtttgaactccgaatcttgcatattttatgcattgtttcaaccaactgagctaagctcac 23154594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 289
Target Start/End: Original strand, 35287490 - 35287568
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    |||||| || ||| |||| ||| ||||| |||| |||||||||| ||||||||||||  ||||||||| ||||||||||    
T  35287490 tttttttgtggtggccggggttggaaccccggaccttgcatattttatgcattgttcataccaactgagctaagctcac 35287568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 289
Target Start/End: Original strand, 54857598 - 54857676
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    ||||||||| ||| |||| ||||||||| |||| |||||||||| |||||||||||   |||||| || ||||||||||    
T  54857598 ttttttggtggtggccggggtttgaaccccggaccttgcatattttatgcattgtttataccaaccgagctaagctcac 54857676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 276
Target Start/End: Original strand, 1162924 - 1162989
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaact 276  Q
    ||||||||||||| | |||||||||||| |  ||||| |||||| |||||||||| ||||||||||    
T  1162924 ttttttggtagtggctggagtttgaaccccacatcttacatattttatgcattgtcccaaccaact 1162989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 13556690 - 13556751
Alignment:
Q  228 gagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    ||||||||||||||||  ||||||||| ||||||| ||||  |||||||||||||| |||||    
T  13556690 gagtttgaacctcggacgttgcatattttatgcatcgttcttaccaactgaactaaactcac 13556751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 292
Target Start/End: Complemental strand, 23160101 - 23160037
Alignment:
Q  228 gagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcacaag 292  Q
    |||||||||||||||| ||| |||||  |||||||||| || ||||||||| ||| |||||||||    
T  23160101 gagtttgaacctcggaccttacatatattatgcattgtccctaccaactgagctacgctcacaag 23160037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 275
Target Start/End: Original strand, 25783440 - 25783496
Alignment:
Q  219 tagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaac 275  Q
    |||||||||||||||||||| |||| |||||||||  |||||||||| || ||||||    
T  25783440 tagtgaccggagtttgaaccccggaccttgcatatattatgcattgtccctaccaac 25783496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 278
Target Start/End: Complemental strand, 40546658 - 40546610
Alignment:
Q  230 gtttgaacctcggatcttgcatattgtatgcattgttccaaccaactga 278  Q
    |||||||||||| | |||||||||| ||||||||||||||| |||||||    
T  40546658 gtttgaacctcgaaacttgcatattttatgcattgttccaatcaactga 40546610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 290
Target Start/End: Complemental strand, 3936705 - 3936626
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcaca 290  Q
    |||||| || ||| |||| ||| ||||| |||| |||||||||  ||||||||||||  ||||||||| |||||||||||    
T  3936705 tttttttgtggtggccggggttcgaaccccggaccttgcatatattatgcattgttcataccaactgagctaagctcaca 3936626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 234 - 289
Target Start/End: Complemental strand, 11364984 - 11364929
Alignment:
Q  234 gaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    ||||||| ||||||||||||| ||| |||||| || |||||||| |||||||||||    
T  11364984 gaacctcagatcttgcatattttattcattgtccctaccaactggactaagctcac 11364929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 278
Target Start/End: Original strand, 13434884 - 13434951
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactga 278  Q
    |||||| || ||||||||||||| ||| ||||| |||||||||| |||||||||| | ||| ||||||    
T  13434884 tttttttgtggtgaccggagttttaacttcggaccttgcatattttatgcattgtccaaactaactga 13434951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 234 - 293
Target Start/End: Complemental strand, 19854620 - 19854561
Alignment:
Q  234 gaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcacaagg 293  Q
    ||||| ||||||||||||||  |||||||||| |  ||||||||| ||||||||||||||    
T  19854620 gaaccccggatcttgcatatattatgcattgtccataccaactgagctaagctcacaagg 19854561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 246 - 293
Target Start/End: Complemental strand, 36061446 - 36061399
Alignment:
Q  246 ttgcatattgtatgcattgttccaaccaactgaactaagctcacaagg 293  Q
    ||||||||| ||||||||||  ||||||||||| ||||||||||||||    
T  36061446 ttgcatattttatgcattgtctcaaccaactgagctaagctcacaagg 36061399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 289
Target Start/End: Original strand, 37725704 - 37725782
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    |||||||||||||  ||| |||| |||| || | |||||||||| ||| |||||| ||||| |||||| ||||||||||    
T  37725704 ttttttggtagtggtcggggtttaaaccccgaaccttgcatattttatacattgtcccaacaaactgagctaagctcac 37725782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 289
Target Start/End: Original strand, 43034325 - 43034403
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    ||||||||| ||| |||| ||||||||||| || |||||||||  |||||||||| |  |||||||||  |||||||||    
T  43034325 ttttttggtggtggccggggtttgaacctcagaccttgcatatattatgcattgtccataccaactgagttaagctcac 43034403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 291
Target Start/End: Original strand, 29681475 - 29681520
Alignment:
Q  246 ttgcatattgtatgcattgttccaaccaactgaactaagctcacaa 291  Q
    ||||||||| |||||||||| |  ||||||||||||||||||||||    
T  29681475 ttgcatattttatgcattgtccataccaactgaactaagctcacaa 29681520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 284
Target Start/End: Original strand, 56551575 - 56551648
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaag 284  Q
    |||||| || ||| |||| |||||||||||||| |||||||||  |||||||||| |  ||||||||| |||||    
T  56551575 tttttttgtggtggccggggtttgaacctcggaccttgcatatattatgcattgtccttaccaactgagctaag 56551648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 298
Target Start/End: Original strand, 19479479 - 19479547
Alignment:
Q  230 gtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcacaagggcaaa 298  Q
    ||||||||| |||| |||||||||  ||||||||||||  |  |||||| |||||||||||||| ||||    
T  19479479 gtttgaaccccggaccttgcatatattatgcattgttcatattaactgagctaagctcacaaggacaaa 19479547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 290
Target Start/End: Complemental strand, 20383547 - 20383487
Alignment:
Q  230 gtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcaca 290  Q
    ||||||||| |||| |||||||||  |||||||||| |  ||||||||| |||||||||||    
T  20383547 gtttgaaccccggaccttgcatatattatgcattgtccataccaactgagctaagctcaca 20383487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 265
Target Start/End: Original strand, 31138990 - 31139030
Alignment:
Q  225 ccggagtttgaacctcggatcttgcatattgtatgcattgt 265  Q
    |||| |||||||||||||| |||||||||| ||||||||||    
T  31138990 ccggggtttgaacctcggaccttgcatattttatgcattgt 31139030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 293
Target Start/End: Complemental strand, 31780789 - 31780741
Alignment:
Q  245 cttgcatattgtatgcattgttccaaccaactgaactaagctcacaagg 293  Q
    |||||||||| |||||||||| |  ||||||||| ||||||||||||||    
T  31780789 cttgcatattttatgcattgtccttaccaactgagctaagctcacaagg 31780741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 289
Target Start/End: Original strand, 37081219 - 37081295
Alignment:
Q  213 ttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    |||||||||||  |||||||||||||||||| |||| ||||  |||| ||| | | ||||||| || ||||||||||    
T  37081219 ttttggtagtggtcggagtttgaacctcggaccttggatatattatgtattttccaaaccaaccgagctaagctcac 37081295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 211 - 289
Target Start/End: Complemental strand, 34191511 - 34191433
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    ||||||||||||| |||| ||||||||| |||| |||||||||| |||||||||| |||||||||||| ||||||||||    
T  34191511 ttttttggtagtggccggggtttgaaccccggaccttgcatattttatgcattgtcccaaccaactgagctaagctcac 34191433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 212 - 289
Target Start/End: Original strand, 4040371 - 4040448
Alignment:
Q  212 tttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    |||||||||||| |||||||||||| |||  |||||| ||||| ||||||||||| ||||||||||| ||||||||||    
T  4040371 tttttggtagtggccggagtttgaatctcaaatcttgtatattttatgcattgtttcaaccaactgatctaagctcac 4040448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 211 - 293
Target Start/End: Original strand, 37791146 - 37791228
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcacaagg 293  Q
    |||||| || ||| ||||||||||||||||| | |||||||||  ||||| ||||| | ||||||||||||||||||||||||    
T  37791146 tttttttgtggtggccggagtttgaacctcgaaccttgcatatattatgcgttgtttctaccaactgaactaagctcacaagg 37791228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 211 - 289
Target Start/End: Original strand, 35270664 - 35270742
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    |||||||||||||||    |||||||||  ||| |||||||||| |||||||||| |||||||||||| ||||||||||    
T  35270664 ttttttggtagtgactaaggtttgaaccctggaccttgcatattttatgcattgtcccaaccaactgagctaagctcac 35270742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 229 - 293
Target Start/End: Original strand, 10704332 - 10704396
Alignment:
Q  229 agtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcacaagg 293  Q
    |||||||||| |||| |||||||||| |||||||||| |  ||||||||| ||||||||||||||    
T  10704332 agtttgaaccccggaccttgcatattttatgcattgtccataccaactgagctaagctcacaagg 10704396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 221 - 289
Target Start/End: Complemental strand, 22619942 - 22619874
Alignment:
Q  221 gtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    |||| |||||||| |||| ||||||||| ||||| ||||||||||||  ||||||||| ||||||||||    
T  22619942 gtgatcggagttttaaccccggatcttgtatattttatgcattgttcataccaactgagctaagctcac 22619874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 288
Target Start/End: Original strand, 5551298 - 5551341
Alignment:
Q  245 cttgcatattgtatgcattgttccaaccaactgaactaagctca 288  Q
    |||||||||| ||||||||||||||||||||||| |||||||||    
T  5551298 cttgcatattttatgcattgttccaaccaactgagctaagctca 5551341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 293
Target Start/End: Original strand, 14188316 - 14188400
Alignment:
Q  209 agttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcacaagg 293  Q
    ||||||||||| |||  | | ||||||||| ||||| ||||||||  |||| ||||| |  ||||||||||||||||||||||||    
T  14188316 agttttttggtggtggtctgggtttgaaccgcggatattgcatatattatggattgtccataccaactgaactaagctcacaagg 14188400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 291
Target Start/End: Complemental strand, 20927697 - 20927637
Alignment:
Q  231 tttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcacaa 291  Q
    |||||||||||||||||||||||  |||| ||||| |  ||||||||| ||||||||||||    
T  20927697 tttgaacctcggatcttgcatatattatgtattgtccataccaactgagctaagctcacaa 20927637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 289
Target Start/End: Original strand, 31591546 - 31591598
Alignment:
Q  237 cctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    ||||||| |||||||||  ||||||||||||| ||||||||| ||||||||||    
T  31591546 cctcggaccttgcatataatatgcattgttcctaccaactgagctaagctcac 31591598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 298
Target Start/End: Complemental strand, 18331785 - 18331698
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcacaagggcaaa 298  Q
    |||||| || ||| |||| | ||||||| |||| |||||||||| |||||||||| |  ||||| ||| |||||||||||||| ||||    
T  18331785 tttttttgtggtggccggggcttgaaccccggaccttgcatattttatgcattgtccataccaagtgagctaagctcacaaggacaaa 18331698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 289
Target Start/End: Original strand, 22538824 - 22538883
Alignment:
Q  230 gtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    |||||||||| ||| |||||||||| |||||||| || |||||||||||  |||||||||    
T  22538824 gtttgaaccttggaccttgcatattttatgcattattacaaccaactgagttaagctcac 22538883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 289
Target Start/End: Complemental strand, 27903176 - 27903113
Alignment:
Q  226 cggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    ||||||||||||| || | |||||||||  ||||||||||||  |||||||||||||| |||||    
T  27903176 cggagtttgaaccccgaaccttgcatatattatgcattgttcataccaactgaactaaactcac 27903113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 289
Target Start/End: Original strand, 41633615 - 41633678
Alignment:
Q  226 cggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    ||||||||||||||| ||||||| ||||| |||| |||||||  ||||||||| ||| ||||||    
T  41633615 cggagtttgaacctcagatcttgtatattttatgtattgttcataccaactgagctatgctcac 41633678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 289
Target Start/End: Complemental strand, 42473953 - 42473894
Alignment:
Q  230 gtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    ||||||||| |||| |||||||||  ||||||||||||||| ||| ||| ||||||||||    
T  42473953 gtttgaaccccggaccttgcatatattatgcattgttccaatcaattgagctaagctcac 42473894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 278
Target Start/End: Complemental strand, 43135078 - 43135011
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactga 278  Q
    ||||||||||||| | || ||||||||| |  | |||||||||| |||||||||||| ||||||||||    
T  43135078 ttttttggtagtggctggggtttgaaccccaaaccttgcatattttatgcattgttctaaccaactga 43135011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 289
Target Start/End: Complemental strand, 22394097 - 22394035
Alignment:
Q  227 ggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    ||||||||||||||||||||| |||||  |||||||||| |  | ||||||| ||||||||||    
T  22394097 ggagtttgaacctcggatcttacatatattatgcattgtccatatcaactgagctaagctcac 22394035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 289
Target Start/End: Original strand, 22665186 - 22665264
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    ||||||||| ||| |||| ||||||||  ||||||||||||||| ||| |||||| |  || |||||| ||||||||||    
T  22665186 ttttttggtggtggccggggtttgaactccggatcttgcatattttatacattgtccatactaactgagctaagctcac 22665264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 289
Target Start/End: Complemental strand, 24408573 - 24408495
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    |||||||||||||  ||| ||||||||| | || |||||||||  ||||||| || | |||||||||| ||||||||||    
T  24408573 ttttttggtagtggtcggggtttgaaccccagaccttgcatatattatgcatcgtccaaaccaactgagctaagctcac 24408495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 289
Target Start/End: Complemental strand, 43358338 - 43358260
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    |||| ||||||||||||   |||||||||||||||||||||||| ||| |||| |    ||||||||| ||||||||||    
T  43358338 ttttatggtagtgaccgagatttgaacctcggatcttgcatattttatacattatctataccaactgagctaagctcac 43358260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 287
Target Start/End: Complemental strand, 776743 - 776683
Alignment:
Q  226 cggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctc 287  Q
    ||||||||||||||| || |||||||||| ||||||||| ||||| |||||||  |||||||    
T  776743 cggagtttgaacctcagaccttgcatattttatgcattg-tccaatcaactgagttaagctc 776683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 283
Target Start/End: Original strand, 24158984 - 24159021
Alignment:
Q  246 ttgcatattgtatgcattgttccaaccaactgaactaa 283  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  24158984 ttgcatattttatacattgttccaaccaactgaactaa 24159021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 289
Target Start/End: Complemental strand, 2839874 - 2839798
Alignment:
Q  213 ttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    |||||||||||  ||||||||||||| || | |||| ||||  |||||||| | | |||||||||| ||||||||||    
T  2839874 ttttggtagtggtcggagtttgaaccccgaaccttggatatattatgcattatccaaaccaactgagctaagctcac 2839798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 291
Target Start/End: Complemental strand, 6345116 - 6345037
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcacaa 291  Q
    |||||| |||||| || | |||||||||  | | |||| ||||| |||||||||| |||||||||||| ||||||||||||    
T  6345116 tttttttgtagtggccagggtttgaaccctgtaccttgtatattttatgcattgt-ccaaccaactgagctaagctcacaa 6345037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 278
Target Start/End: Original strand, 18930358 - 18930394
Alignment:
Q  242 gatcttgcatattgtatgcattgttccaaccaactga 278  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  18930358 gatcttgcatattttatgcgttgttccaaccaactga 18930394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 211 - 291
Target Start/End: Original strand, 44406839 - 44406919
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcacaa 291  Q
    |||||| |||||||  ||| ||||||||||||| |||||||||| |||||||||| |||||||||||| ||||||||||||    
T  44406839 tttttttgtagtgattggaatttgaacctcggaccttgcatattttatgcattgtcccaaccaactgagctaagctcacaa 44406919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 212 - 289
Target Start/End: Complemental strand, 18378480 - 18378402
Alignment:
Q  212 tttttggtagtgaccggagtttgaacctcgga-tcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    |||||||||||| |||| ||||||||| | || | ||||||||| |||||||||| |||||||||||| ||||||||||    
T  18378480 tttttggtagtggccggggtttgaaccccagacttttgcatattttatgcattgtcccaaccaactgagctaagctcac 18378402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 211 - 289
Target Start/End: Original strand, 48103657 - 48103735
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    ||||| ||||||| | |||||||||||| || | |||||||||| |||||||||| ||||||||||||  |||||||||    
T  48103657 tttttgggtagtggctggagtttgaaccccgaaccttgcatattttatgcattgtcccaaccaactgagttaagctcac 48103735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 35224179 - 35224118
Alignment:
Q  228 gagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    ||||||||| | |||| |||||||||| |||||||||| |||||||||||||||||| ||||    
T  35224179 gagtttgaaacccggaccttgcatattttatgcattgtcccaaccaactgaactaagttcac 35224118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 213 - 289
Target Start/End: Complemental strand, 7670510 - 7670434
Alignment:
Q  213 ttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    |||||||||||  ||  ||||||||| |||| |||||||||  |||||||||||| |||||||||| ||||||||||    
T  7670510 ttttggtagtggtcgaggtttgaaccccggaccttgcatatattatgcattgttcaaaccaactgagctaagctcac 7670434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 211 - 289
Target Start/End: Original strand, 18505644 - 18505718
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    ||||||||||||   ||| ||||||||| ||||||||||||||| |||||||||| || ||||||||| ||||||||||    
T  18505644 ttttttggtagt---cggggtttgaacc-cggatcttgcatattttatgcattgtccctaccaactgagctaagctcac 18505718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 213 - 289
Target Start/End: Original strand, 19626510 - 19626586
Alignment:
Q  213 ttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    ||||||||||| |||| ||||||||| |||| |||||||||  |||||||||| | ||||||||||  |||||||||    
T  19626510 ttttggtagtggccggtgtttgaaccccggaccttgcatatattatgcattgtccaaaccaactgagttaagctcac 19626586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 213 - 289
Target Start/End: Complemental strand, 46737861 - 46737785
Alignment:
Q  213 ttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    ||||||||||| |||| ||||||||| |||| |||||||||  |||||||||| | ||| |||||| ||||||||||    
T  46737861 ttttggtagtggccggtgtttgaaccccggaccttgcatatattatgcattgtccaaacaaactgagctaagctcac 46737785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 298
Target Start/End: Original strand, 1079695 - 1079762
Alignment:
Q  231 tttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcacaagggcaaa 298  Q
    |||||||| |||| |||||||||| |||||||||||||||| ||||||  ||||||||| ||| ||||    
T  1079695 tttgaaccccggaccttgcatattttatgcattgttccaactaactgagttaagctcacgaggacaaa 1079762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 289
Target Start/End: Complemental strand, 36121730 - 36121651
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcat-tgttccaaccaactgaactaagctcac 289  Q
    ||||||||||||| |||| ||||||||| |||| |||||||||| ||||||| ||| ||||||||| || || |||||||    
T  36121730 ttttttggtagtggccggggtttgaaccccggaccttgcatattttatgcatatgtcccaaccaaccgagctcagctcac 36121651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 288
Target Start/End: Original strand, 47342416 - 47342494
Alignment:
Q  210 gttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctca 288  Q
    ||||||||||||||  ||||||||||||  |||| |||||||||  |||||||||| | ||||||||||  ||||||||    
T  47342416 gttttttggtagtggtcggagtttgaactccggaccttgcatatattatgcattgtccaaaccaactgagttaagctca 47342494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 9690313 - 9690374
Alignment:
Q  228 gagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    ||||||||||||||||  ||||||||| ||||||| ||||  |||||||||||||| |||||    
T  9690313 gagtttgaacctcggacgttgcatattttatgcatcgttcttaccaactgaactaaactcac 9690374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 289
Target Start/End: Complemental strand, 35103540 - 35103496
Alignment:
Q  245 cttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    |||||||||| |||||||||| |||||||||||| ||||||||||    
T  35103540 cttgcatattttatgcattgtcccaaccaactgagctaagctcac 35103496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 289
Target Start/End: Original strand, 28200383 - 28200446
Alignment:
Q  226 cggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    |||||||||||||||| || ||||||||  |||| |||||||| |||||||||  |||||||||    
T  28200383 cggagtttgaacctcgaattttgcatatattatgtattgttcctaccaactgagttaagctcac 28200446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 293
Target Start/End: Original strand, 43539106 - 43539169
Alignment:
Q  230 gtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcacaagg 293  Q
    ||||||||| |||| ||| |||||  ||||||||||||| | ||||||| ||||||||||||||    
T  43539106 gtttgaaccccggaccttacatatattatgcattgttcctatcaactgagctaagctcacaagg 43539169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 287
Target Start/End: Original strand, 24027053 - 24027118
Alignment:
Q  221 gtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctc 287  Q
    |||||||| ||||||||| || | |||||||||| ||||||||||||||| ||||| | ||||||||    
T  24027053 gtgaccggggtttgaaccccg-accttgcatattttatgcattgttccaatcaactaagctaagctc 24027118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 289
Target Start/End: Original strand, 4495824 - 4495857
Alignment:
Q  256 tatgcattgttccaaccaactgaactaagctcac 289  Q
    |||||||||||||||||| |||||||||||||||    
T  4495824 tatgcattgttccaaccagctgaactaagctcac 4495857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 39280818 - 39280879
Alignment:
Q  228 gagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    ||||||||||| |||| |||||||||  ||||||||||||  ||||||||| ||||| ||||    
T  39280818 gagtttgaaccccggaccttgcatatattatgcattgttcttaccaactgagctaagttcac 39280879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 289
Target Start/End: Original strand, 3536239 - 3536315
Alignment:
Q  213 ttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    |||| ||||||  ||||||||||| | || | ||| |||||  ||||||||||||||||||||||| || |||||||    
T  3536239 tttttgtagtggtcggagtttgaatcccgaaccttacatatattatgcattgttccaaccaactgagcttagctcac 3536315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 283
Target Start/End: Original strand, 10421980 - 10422052
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaa 283  Q
    ||||||| ||||| |||||||||||||| | |||||| |||||  |||||||| ||  |||||||| ||||||    
T  10421980 ttttttgatagtggccggagtttgaaccccagatcttacatatattatgcattttttaaaccaactaaactaa 10422052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 265
Target Start/End: Complemental strand, 11274957 - 11274917
Alignment:
Q  225 ccggagtttgaacctcggatcttgcatattgtatgcattgt 265  Q
    |||||||| |||||| |||||||||||||| ||||||||||    
T  11274957 ccggagttcgaaccttggatcttgcatattttatgcattgt 11274917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 289
Target Start/End: Complemental strand, 13955524 - 13955480
Alignment:
Q  245 cttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    |||||||||| ||||||||||||  ||||||||| ||||||||||    
T  13955524 cttgcatattttatgcattgttcataccaactgagctaagctcac 13955480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 283
Target Start/End: Original strand, 37307877 - 37307929
Alignment:
Q  231 tttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaa 283  Q
    ||||||| |||||||||||||||  ||||||||||||| | ||||||| ||||    
T  37307877 tttgaacatcggatcttgcatatattatgcattgttcctatcaactgagctaa 37307929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 211 - 290
Target Start/End: Original strand, 7202899 - 7202978
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcaca 290  Q
    |||||||||||||||||| |||||||||  | | |||||||||| ||||||||||||||||||||||| |||| ||||||    
T  7202899 ttttttggtagtgaccggggtttgaaccctgaaccttgcatattttatgcattgttccaaccaactgagctaaactcaca 7202978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 211 - 286
Target Start/End: Complemental strand, 41030243 - 41030168
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagct 286  Q
    ||||||||||||||||||||||||||||||  | |||||||||| |||| |||||| |||| |||||| |||||||    
T  41030243 ttttttggtagtgaccggagtttgaacctcaaaccttgcatattttatgtattgtttcaactaactgagctaagct 41030168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 230 - 300
Target Start/End: Complemental strand, 9598498 - 9598428
Alignment:
Q  230 gtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcacaagggcaaaat 300  Q
    ||||||| |||||| |||||||||| ||| |||||| ||||||||||||||||||||||| ||| ||||||    
T  9598498 gtttgaatctcggaccttgcatattttatacattgtcccaaccaactgaactaagctcacgaggacaaaat 9598428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 286
Target Start/End: Original strand, 47536477 - 47536537
Alignment:
Q  225 ccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagct 286  Q
    ||||||||||||||||||| |||||||||| |||||||||| || ||||||| |||||||||    
T  47536477 ccggagtttgaacctcggaccttgcatattttatgcattgtccctaccaact-aactaagct 47536537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 213 - 289
Target Start/End: Original strand, 4332652 - 4332728
Alignment:
Q  213 ttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    |||||||||||  ||||||||||||| |||| |||| ||||  |||||||| ||| |||||||||| ||||||||||    
T  4332652 ttttggtagtggtcggagtttgaaccccggaccttggatatattatgcattattcaaaccaactgagctaagctcac 4332728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 289
Target Start/End: Complemental strand, 3582841 - 3582782
Alignment:
Q  230 gtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    |||||||||||||| |||||||||| |||||||| | |||||||||||| |||| |||||    
T  3582841 gtttgaacctcggaccttgcatattttatgcattctcccaaccaactgagctaatctcac 3582782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 289
Target Start/End: Complemental strand, 22722461 - 22722402
Alignment:
Q  230 gtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    |||||||||||||| |||||||||| ||||||||||||  || |||||| ||||||||||    
T  22722461 gtttgaacctcggaccttgcatattttatgcattgttcatactaactgagctaagctcac 22722402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 289
Target Start/End: Complemental strand, 14827603 - 14827525
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    |||||| || ||| |||| |||| |||| ||||||||||||||| |||||||||| |  ||||||||| ||||||||||    
T  14827603 tttttttgtggtggccggggtttaaaccccggatcttgcatattttatgcattgtccataccaactgagctaagctcac 14827525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 285
Target Start/End: Original strand, 38034792 - 38034866
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagc 285  Q
    ||||| ||||||| |||  ||||||||| |||| |||||||||| |||| ||||| |||||||||||| ||||||    
T  38034792 tttttgggtagtggccgaggtttgaaccccggaccttgcatattttatgtattgtcccaaccaactgagctaagc 38034866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 293
Target Start/End: Original strand, 38130942 - 38131024
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcacaagg 293  Q
    ||||||||| ||| |||| ||||||||| |||| |||||||||  |||||||||| |  |||||||||  |||||||||||||    
T  38130942 ttttttggtggtggccggggtttgaaccccggaccttgcatatattatgcattgtccataccaactgagttaagctcacaagg 38131024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 289
Target Start/End: Original strand, 10922310 - 10922369
Alignment:
Q  230 gtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    ||||||||| ||||||||||||||  |||||||||| || |||||||||  |||||||||    
T  10922310 gtttgaaccccggatcttgcatatattatgcattgtccctaccaactgagttaagctcac 10922369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 289
Target Start/End: Original strand, 24120403 - 24120482
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgca-ttgttccaaccaactgaactaagctcac 289  Q
    |||||| || |||| ||||||||||||| ||||||||||||||  |||||| ||||  | ||||||||| ||||||||||    
T  24120403 tttttttgtggtgatcggagtttgaaccgcggatcttgcatatattatgcatttgtctctaccaactgagctaagctcac 24120482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 287
Target Start/End: Original strand, 28430565 - 28430624
Alignment:
Q  228 gagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctc 287  Q
    ||||||||||||| || |||||||||  ||||||||||||  |||||||||| |||||||    
T  28430565 gagtttgaacctcagaccttgcatatattatgcattgttcgtaccaactgaattaagctc 28430624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 289
Target Start/End: Original strand, 23316356 - 23316426
Alignment:
Q  219 tagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    ||||||||  |||||||||   ||| |||||||||| |||||||||| ||||||||||||  |||||||||    
T  23316356 tagtgaccaaagtttgaactctggaacttgcatattttatgcattgtcccaaccaactgaggtaagctcac 23316426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 289
Target Start/End: Original strand, 28244087 - 28244165
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    |||||| || |||| ||| ||| ||||| |||| |||||||||| ||||||||||||  |||||||||  |||||||||    
T  28244087 tttttttgtggtgatcggggttcgaaccccggaccttgcatattttatgcattgttcataccaactgagttaagctcac 28244165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 289
Target Start/End: Complemental strand, 47943356 - 47943298
Alignment:
Q  231 tttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    |||||||||| || |||||||||| |||||| ||| ||||||||||||  |||||||||    
T  47943356 tttgaacctcagaccttgcatattttatgcactgtcccaaccaactgagttaagctcac 47943298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 289
Target Start/End: Original strand, 19210335 - 19210379
Alignment:
Q  245 cttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    |||||||||| ||||||||| |||||||||||||  |||||||||    
T  19210335 cttgcatattatatgcattgctccaaccaactgagttaagctcac 19210379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 289
Target Start/End: Original strand, 21628873 - 21628949
Alignment:
Q  213 ttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    |||||||||||  ||||||||||||| ||||  ||| ||||  |||||||| | | |||||||||| ||||||||||    
T  21628873 ttttggtagtggtcggagtttgaaccccggacgttggatatattatgcattatccaaaccaactgagctaagctcac 21628949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 289
Target Start/End: Complemental strand, 22462157 - 22462117
Alignment:
Q  249 catattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    |||||| |||||||||| |||||||||| ||||||||||||    
T  22462157 catattttatgcattgtcccaaccaacttaactaagctcac 22462117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 278
Target Start/End: Original strand, 27065734 - 27065782
Alignment:
Q  230 gtttgaacctcggatcttgcatattgtatgcattgttccaaccaactga 278  Q
    |||||||||  ||| |||||||||| |||||||||| ||||||||||||    
T  27065734 gtttgaaccctggaccttgcatattttatgcattgtcccaaccaactga 27065782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 289
Target Start/End: Complemental strand, 48531353 - 48531278
Alignment:
Q  213 ttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    |||||||||||  ||| ||||||||| || | |||||||||| |||| ||| | |||||||||||| ||||||||||    
T  48531353 ttttggtagtggtcggggtttgaacc-cgaaccttgcatattttatgtattatcccaaccaactgagctaagctcac 48531278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 213 - 289
Target Start/End: Original strand, 24023400 - 24023476
Alignment:
Q  213 ttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    |||||||||||  ||| ||||||||| |||| |||||||||| |||||||||||||||| |||||| ||||||||||    
T  24023400 ttttggtagtggtcggggtttgaaccccggaccttgcatattttatgcattgttccaactaactgagctaagctcac 24023476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 211 - 289
Target Start/End: Original strand, 8461819 - 8461897
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    |||||||||||||  ||| ||||||||  |||| |||||||||| |||||||||| |||||||||||| ||||||||||    
T  8461819 ttttttggtagtggtcggggtttgaactccggaccttgcatattttatgcattgtcccaaccaactgagctaagctcac 8461897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 211 - 289
Target Start/End: Complemental strand, 41324192 - 41324114
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    ||||||||||||||||||  ||||||||||| | |||||||||| |||||||||| | ||||||  |||||||||||||    
T  41324192 ttttttggtagtgaccgggatttgaacctcgaaccttgcatattttatgcattgtccaaaccaatcgaactaagctcac 41324114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 289
Target Start/End: Original strand, 8544583 - 8544660
Alignment:
Q  212 tttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    |||||||||||| | |||||||||||| | || |||||||||| ||| |||| |||||||| ||||| ||||||||||    
T  8544583 tttttggtagtggctggagtttgaaccccagaccttgcatattttatacattattccaaccgactgagctaagctcac 8544660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 211 - 275
Target Start/End: Original strand, 22504273 - 22504336
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaac 275  Q
    |||||||||||||| ||||||||||||| || | |||||||||| ||||||||| ||||||||||    
T  22504273 ttttttggtagtgatcggagtttgaaccccgaaccttgcatattttatgcattg-tccaaccaac 22504336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 290
Target Start/End: Original strand, 32051518 - 32051594
Alignment:
Q  214 tttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcaca 290  Q
    |||||| ||| |||| ||||||||| |||| |||||||||  |||||||||| | |||||||||| |||||||||||    
T  32051518 tttggtggtggccggggtttgaaccccggaccttgcatatattatgcattgtccaaaccaactgagctaagctcaca 32051594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 298
Target Start/End: Complemental strand, 16340404 - 16340317
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcacaagggcaaa 298  Q
    ||||||||||||| | |  | ||||||| || | ||| |||||| ||||| |||||||||||||||||||||||||||| ||| ||||    
T  16340404 ttttttggtagtggctgaggattgaaccccgaaccttacatattttatgcgttgttccaaccaactgaactaagctcacgaggacaaa 16340317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 288
Target Start/End: Original strand, 43330257 - 43330315
Alignment:
Q  230 gtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctca 288  Q
    |||||||||||| |  ||||||||| |||| |||||||||||||||||| |||||||||    
T  43330257 gtttgaacctcgtacgttgcatattttatgtattgttccaaccaactgagctaagctca 43330315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 227 - 284
Target Start/End: Complemental strand, 2508667 - 2508610
Alignment:
Q  227 ggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaag 284  Q
    |||||||||| |  ||| |||||||||| ||||||||||||||||||||||| |||||    
T  2508667 ggagtttgaatcatggaccttgcatattttatgcattgttccaaccaactgagctaag 2508610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 278
Target Start/End: Complemental strand, 7553757 - 7553690
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactga 278  Q
    |||||| || ||| ||||||||||||||| ||| |||||||||  |||||||||| || |||||||||    
T  7553757 tttttttgtggtgtccggagtttgaaccttggaccttgcatatattatgcattgtccctaccaactga 7553690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 246 - 289
Target Start/End: Complemental strand, 18638143 - 18638100
Alignment:
Q  246 ttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    ||||||||| ||||||||||||||||||||||| ||||| ||||    
T  18638143 ttgcatattttatgcattgttccaaccaactgagctaagttcac 18638100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 293
Target Start/End: Complemental strand, 18942997 - 18942914
Alignment:
Q  210 gttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcacaagg 293  Q
    |||||||||| ||| |||| ||||||| | |||| | |||||||  |||||||| | || ||||||||| ||||||||||||||    
T  18942997 gttttttggtcgtgtccggggtttgaaacccggaccatgcatatattatgcattatccctaccaactgagctaagctcacaagg 18942914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 289
Target Start/End: Complemental strand, 33105450 - 33105391
Alignment:
Q  230 gtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    ||||||||| |||| |||||||||  |||||||||||| ||||| |||| ||||||||||    
T  33105450 gtttgaaccccggaccttgcatatattatgcattgttcaaaccagctgagctaagctcac 33105391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 278
Target Start/End: Complemental strand, 33743653 - 33743586
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactga 278  Q
    |||||| || ||| ||| ||||||||||||||| |||||||||| |||||||||| |  |||||||||    
T  33743653 tttttttgtggtggccgaagtttgaacctcggaccttgcatattttatgcattgtcctcaccaactga 33743586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 289
Target Start/End: Complemental strand, 10601841 - 10601763
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    ||||||||| ||| |||| ||||||| | || |||||||||||  |||||||||| |  |||||||||| |||||||||    
T  10601841 ttttttggttgtggccggggtttgaatcccgaatcttgcatatattatgcattgtccataccaactgaattaagctcac 10601763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 289
Target Start/End: Original strand, 25136827 - 25136905
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    ||||||||| ||| |||  |||||||||||||| |||||||||| ||||| |||| |  ||||||||| ||| ||||||    
T  25136827 ttttttggtggtggccgaggtttgaacctcggaccttgcatattttatgccttgtccataccaactgagctatgctcac 25136905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 265
Target Start/End: Complemental strand, 43778097 - 43778043
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgt 265  Q
    ||||||||| |||  ||||||||||||||| || |||||||||| ||||||||||    
T  43778097 ttttttggtggtggtcggagtttgaacctcagaccttgcatattttatgcattgt 43778043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 289
Target Start/End: Original strand, 4805794 - 4805827
Alignment:
Q  256 tatgcattgttccaaccaactgaactaagctcac 289  Q
    ||||||||||||| ||||||||||||||||||||    
T  4805794 tatgcattgttccgaccaactgaactaagctcac 4805827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 26885638 - 26885699
Alignment:
Q  228 gagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    ||||| ||||| |||||||| |||||| ||||||||||||  ||||||||| |||| |||||    
T  26885638 gagttcgaaccccggatcttacatattttatgcattgttcataccaactgagctaaactcac 26885699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 289
Target Start/End: Original strand, 5448447 - 5448491
Alignment:
Q  245 cttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    |||| ||||| ||||||||||| |||||||||||| |||||||||    
T  5448447 cttgtatattttatgcattgtttcaaccaactgaattaagctcac 5448491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 278
Target Start/End: Complemental strand, 18533728 - 18533680
Alignment:
Q  230 gtttgaacctcggatcttgcatattgtatgcattgttccaaccaactga 278  Q
    ||||||||| ||||||||||||||  ||||||||||||  |||||||||    
T  18533728 gtttgaaccccggatcttgcatatattatgcattgttcttaccaactga 18533680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 19716176 - 19716140
Alignment:
Q  245 cttgcatattgtatgcattgttccaaccaactgaact 281  Q
    |||||||||| |||||||||| |||||||||||||||    
T  19716176 cttgcatattttatgcattgtcccaaccaactgaact 19716140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 289
Target Start/End: Original strand, 29716697 - 29716761
Alignment:
Q  225 ccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    |||||||||||| | |||| |||||||||  |||| |||||||| |||||||||  |||||||||    
T  29716697 ccggagtttgaatcccggaccttgcatatattatgaattgttcctaccaactgagttaagctcac 29716761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 289
Target Start/End: Complemental strand, 35103174 - 35103106
Alignment:
Q  221 gtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    |||||||  |||||||||||||| ||||| ||   ||||||||||||  ||||||||| ||||||||||    
T  35103174 gtgaccgacgtttgaacctcggaccttgcttacattatgcattgttcataccaactgagctaagctcac 35103106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 211 - 289
Target Start/End: Complemental strand, 185341 - 185263
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    ||||||| | |||||||| ||||||||| ||||||||||||||| |||||||||| |  ||||||||| ||||||||||    
T  185341 ttttttgatggtgaccggggtttgaaccccggatcttgcatattttatgcattgtccataccaactgagctaagctcac 185263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 298
Target Start/End: Complemental strand, 7781 - 7713
Alignment:
Q  230 gtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcacaagggcaaa 298  Q
    |||||||||||||| ||||||| || |||||||||| |  |||||||||  ||||||| ||||| ||||    
T  7781 gtttgaacctcggaccttgcatgttttatgcattgtccataccaactgagttaagctcgcaaggacaaa 7713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 211 - 293
Target Start/End: Original strand, 26356064 - 26356146
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcacaagg 293  Q
    |||||| |||||| |||||||||||||| || | |||||||||  |||||||||| |||||||||||| || |||||||||||    
T  26356064 tttttttgtagtggccggagtttgaaccccgaaccttgcatatattatgcattgtcccaaccaactgagcttagctcacaagg 26356146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 211 - 289
Target Start/End: Complemental strand, 34701225 - 34701147
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    |||||| || ||| |||||||||||||||| || |||||||||  ||||||||||||| ||||||||||||||| ||||    
T  34701225 tttttttgtggtggccggagtttgaacctcagaccttgcatatattatgcattgttcctaccaactgaactaagttcac 34701147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 211 - 289
Target Start/End: Original strand, 26320547 - 26320624
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    |||||| || |||||||||||||||||| |||| |||||||||| |||||||||| |  ||||||||| ||||||||||    
T  26320547 ttttttagtggtgaccggagtttgaacc-cggaccttgcatattttatgcattgtccataccaactgagctaagctcac 26320624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 287
Target Start/End: Original strand, 8637439 - 8637496
Alignment:
Q  230 gtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctc 287  Q
    |||||||||||||| |||||||||  |||||||||| || ||||||||||||||||||    
T  8637439 gtttgaacctcggaccttgcatatattatgcattgtccctaccaactgaactaagctc 8637496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 294
Target Start/End: Original strand, 14049867 - 14049950
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcacaaggg 294  Q
    ||||||||| ||| ||||| |||||||||| || |||||||||  ||||||||||  ||| ||||||| || ||||||||||||    
T  14049867 ttttttggtggtggccggaatttgaacctcagaccttgcatatattatgcattgtctcaatcaactgagcttagctcacaaggg 14049950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 278
Target Start/End: Original strand, 14429111 - 14429178
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactga 278  Q
    ||||||||||||||||||  |||||||| |||| |||||||||| |||| ||| | ||||||||||||    
T  14429111 ttttttggtagtgaccgggatttgaaccccggaccttgcatattttatgtattatcccaaccaactga 14429178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 293
Target Start/End: Original strand, 655732 - 655814
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcacaagg 293  Q
    ||||||||||||| |||| ||| ||||| |||| |||||||||  ||||||||||    ||||||||| ||||||||||||||    
T  655732 ttttttggtagtggccggggttcgaaccccggaccttgcatatattatgcattgtcgataccaactgagctaagctcacaagg 655814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 289
Target Start/End: Complemental strand, 21296835 - 21296758
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    |||||| |||||| ||||  ||||||||| ||| |||||||||| |||||||||| |||||||||||| |||| |||||    
T  21296835 tttttttgtagtggccgggatttgaacct-ggaccttgcatattttatgcattgtcccaaccaactgagctaaactcac 21296758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 289
Target Start/End: Complemental strand, 30579937 - 30579859
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    |||||| |||||| ||| |||||||||| |  | |||||||||| |||||||||| |||||||||||| ||||| ||||    
T  30579937 tttttttgtagtggccgaagtttgaaccccaaaccttgcatattttatgcattgtcccaaccaactgagctaagttcac 30579859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 298
Target Start/End: Original strand, 12700438 - 12700491
Alignment:
Q  245 cttgcatattgtatgcattgttccaaccaactgaactaagctcacaagggcaaa 298  Q
    |||||||||  ||||||||||||  |||||||||||||||||||||||| ||||    
T  12700438 cttgcatatattatgcattgttcataccaactgaactaagctcacaaggacaaa 12700491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 232 - 293
Target Start/End: Original strand, 24167894 - 24167955
Alignment:
Q  232 ttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcacaagg 293  Q
    |||||||  |||||||||||||| |||||||||| | ||||||||||  |||||||||||||    
T  24167894 ttgaaccatggatcttgcatattttatgcattgtacaaaccaactgagttaagctcacaagg 24167955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 267
Target Start/End: Complemental strand, 1606713 - 1606657
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttc 267  Q
    |||||| || ||| |||||||||||| ||||||||||||||||| ||| ||||||||    
T  1606713 tttttttgtggtggccggagtttgaatctcggatcttgcatattttatacattgttc 1606657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 289
Target Start/End: Complemental strand, 9582010 - 9581966
Alignment:
Q  245 cttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    |||| ||||| ||||||||||||||||||||||| ||||||||||    
T  9582010 cttgtatattttatgcattgttccaaccaactgagctaagctcac 9581966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 234 - 289
Target Start/End: Complemental strand, 9111102 - 9111047
Alignment:
Q  234 gaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    ||||| |||| |||||||||  ||||||||||||  ||||||||||||||||||||    
T  9111102 gaaccccggaccttgcatatattatgcattgttcataccaactgaactaagctcac 9111047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 229 - 288
Target Start/End: Original strand, 24324189 - 24324248
Alignment:
Q  229 agtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctca 288  Q
    ||||||||||||| ||||||||| || ||||| |||| || ||||||||| |||||||||    
T  24324189 agtttgaacctcgaatcttgcattttttatgcgttgtccctaccaactgagctaagctca 24324248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 289
Target Start/End: Complemental strand, 5937690 - 5937632
Alignment:
Q  231 tttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    |||||||| |||| ||| |||||| ||||||||||  ||||||||||| ||||||||||    
T  5937690 tttgaaccccggacctttcatattttatgcattgtctcaaccaactgagctaagctcac 5937632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 289
Target Start/End: Complemental strand, 32053866 - 32053788
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    ||||||| | ||| |||||||||||||| || | |||||||||  |||||||||| |  ||||||||| ||||||||||    
T  32053866 ttttttgttggtggccggagtttgaaccacgaaccttgcatatattatgcattgtccataccaactgagctaagctcac 32053788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 298
Target Start/End: Original strand, 12735260 - 12735313
Alignment:
Q  245 cttgcatattgtatgcattgttccaaccaactgaactaagctcacaagggcaaa 298  Q
    |||||||||| |||||||||| ||||||||||||  ||||||||| ||| ||||    
T  12735260 cttgcatattttatgcattgtcccaaccaactgagttaagctcacgaggacaaa 12735313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 266
Target Start/End: Complemental strand, 8809365 - 8809329
Alignment:
Q  230 gtttgaacctcggatcttgcatattgtatgcattgtt 266  Q
    ||||||||||||||||||||||||  |||||||||||    
T  8809365 gtttgaacctcggatcttgcatatattatgcattgtt 8809329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 283
Target Start/End: Original strand, 15060916 - 15060984
Alignment:
Q  215 ttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaa 283  Q
    ||||||||| ||| ||||||||||   ||  ||||||||| |||||||||| |||| ||||||||||||    
T  15060916 ttggtagtggccgaagtttgaacccacgacattgcatattttatgcattgtcccaatcaactgaactaa 15060984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 220 - 289
Target Start/End: Complemental strand, 22980 - 22911
Alignment:
Q  220 agtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    ||||||||| |||||||||||||| |||||||||| ||||||||||||  | ||||| ||||||||||||    
T  22980 agtgaccggggtttgaacctcggaccttgcatattttatgcattgttcatatcaactaaactaagctcac 22911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 211 - 288
Target Start/End: Complemental strand, 23203400 - 23203323
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctca 288  Q
    ||||| |||||||  ||| ||||||||| || | |||||||||| ||||||||||||||||||||||| |||||||||    
T  23203400 tttttgggtagtggtcggggtttgaaccccgaaccttgcatattttatgcattgttccaaccaactgagctaagctca 23203323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 293
Target Start/End: Complemental strand, 47340866 - 47340783
Alignment:
Q  210 gttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcacaagg 293  Q
    ||||||||||  || |||| ||||||| | || ||||| |||||| |||||||||| |||||||||||| ||||||||||||||    
T  47340866 gttttttggtcatggccggggtttgaatcccgaatctttcatattttatgcattgtcccaaccaactgagctaagctcacaagg 47340783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 278
Target Start/End: Complemental strand, 15668570 - 15668509
Alignment:
Q  217 ggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactga 278  Q
    ||||||| | || ||||||||| |||| |||||||||| |||||||||||||||||||||||    
T  15668570 ggtagtggctggggtttgaaccccggaccttgcatattttatgcattgttccaaccaactga 15668509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 226 - 278
Target Start/End: Original strand, 2596938 - 2596990
Alignment:
Q  226 cggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactga 278  Q
    ||||||||||||| |||| |||||||||| |||||||||||| ||||||||||    
T  2596938 cggagtttgaaccccggaccttgcatattttatgcattgttctaaccaactga 2596990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 286
Target Start/End: Original strand, 5503748 - 5503823
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagct 286  Q
    ||||||||| |||| ||||||||||||| || | |||| ||||| ||||||||||| | ||||||||| |||||||    
T  5503748 ttttttggtggtgatcggagtttgaaccccgaaccttgtatattttatgcattgtttctaccaactgagctaagct 5503823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 289
Target Start/End: Complemental strand, 26998683 - 26998604
Alignment:
Q  210 gttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    ||||||| ||||||  ||| ||||||||| | |||| |||||||  |||||||||||||||||| |||| ||||||||||    
T  26998683 gtttttttgtagtggtcggggtttgaaccccagatcctgcatatcttatgcattgttccaaccagctgagctaagctcac 26998604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 289
Target Start/End: Complemental strand, 50040427 - 50040356
Alignment:
Q  218 gtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    ||||||||| | |||||||||  ||| |||||||||| |||||||||| |||||||||||| ||||| ||||    
T  50040427 gtagtgaccagggtttgaaccctggaccttgcatattttatgcattgtcccaaccaactgagctaagttcac 50040356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 289
Target Start/End: Original strand, 44860866 - 44860944
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    ||||||||||||| |||| ||||||||| | || |||| ||||| |||||||||| | |||||||||| ||||| ||||    
T  44860866 ttttttggtagtggccggggtttgaaccccagaccttggatattttatgcattgtccaaaccaactgagctaagttcac 44860944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 291
Target Start/End: Complemental strand, 33153679 - 33153618
Alignment:
Q  230 gtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcacaa 291  Q
    |||| ||||||||| |||| ||||| |||||||||| ||||||||||||  |||||||||||    
T  33153679 gtttaaacctcggaccttgtatattttatgcattgtcccaaccaactgagttaagctcacaa 33153618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 289
Target Start/End: Complemental strand, 15892857 - 15892797
Alignment:
Q  230 gtttgaacctcggatcttgcatattgt-atgcattgttccaaccaactgaactaagctcac 289  Q
    |||||||||||||| ||| |||||| | |||||||||||  ||||||||||||||||||||    
T  15892857 gtttgaacctcggaccttacatatttttatgcattgttcataccaactgaactaagctcac 15892797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 289
Target Start/End: Complemental strand, 25533037 - 25532973
Alignment:
Q  225 ccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    |||| ||||||||| |||| |||||||||  |||||||||| |  ||||||||||||||||||||    
T  25533037 ccggggtttgaaccccggaccttgcatatattatgcattgtccataccaactgaactaagctcac 25532973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 289
Target Start/End: Original strand, 41769800 - 41769876
Alignment:
Q  213 ttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    |||||||||||  ||||||||||||| |||| |||| ||||  |||||||| | | |||||||||| ||||||||||    
T  41769800 ttttggtagtggtcggagtttgaaccccggaccttggatatattatgcattatccaaaccaactgagctaagctcac 41769876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 283
Target Start/End: Complemental strand, 47835864 - 47835813
Alignment:
Q  231 tttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaa 283  Q
    |||||||| |||| |||||||||| ||||||||||||||||||||||| ||||    
T  47835864 tttgaacc-cggaccttgcatattttatgcattgttccaaccaactgagctaa 47835813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 278
Target Start/End: Original strand, 6000126 - 6000193
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactga 278  Q
    |||||| || ||| |||| |||||||||||||| |||||||||  |||||||||| | ||||||||||    
T  6000126 tttttttgtggtgtccggggtttgaacctcggaccttgcatatattatgcattgtcctaaccaactga 6000193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 293
Target Start/End: Complemental strand, 23524883 - 23524820
Alignment:
Q  230 gtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcacaagg 293  Q
    ||||||||  || ||||| |||||| ||||||||||||||| |||||||  |||||||||||||    
T  23524883 gtttgaactccgaatctttcatattttatgcattgttccaatcaactgagttaagctcacaagg 23524820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 293
Target Start/End: Original strand, 33153882 - 33153945
Alignment:
Q  230 gtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcacaagg 293  Q
    |||||||||||||| ||| |||||  |||||||||| || |||||||||  |||||||||||||    
T  33153882 gtttgaacctcggaccttacatatattatgcattgtccctaccaactgagttaagctcacaagg 33153945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 289
Target Start/End: Complemental strand, 11702044 - 11701966
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    |||||||||||||  | | ||||| |||  ||| ||| |||||| |||||||||| ||||||||||||| |||||||||    
T  11702044 ttttttggtagtggtcagggtttgcaccctggaccttacatattttatgcattgtcccaaccaactgaattaagctcac 11701966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 289
Target Start/End: Complemental strand, 13673591 - 13673545
Alignment:
Q  243 atcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    |||||||||||| |||||||||||| ||||||| || ||||||||||    
T  13673591 atcttgcatattttatgcattgttcaaaccaaccgagctaagctcac 13673545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 288
Target Start/End: Original strand, 52262164 - 52262226
Alignment:
Q  226 cggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctca 288  Q
    |||||||||||||||| |  ||||||||| ||||||||||||  |||||||||  ||||||||    
T  52262164 cggagtttgaacctcgaactttgcatattttatgcattgttcataccaactgagttaagctca 52262226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 287
Target Start/End: Original strand, 12268986 - 12269043
Alignment:
Q  230 gtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctc 287  Q
    ||||||||| |||| |||||||||  ||||||||||||| |||||||||  |||||||    
T  12268986 gtttgaaccccggaccttgcatatattatgcattgttcctaccaactgacttaagctc 12269043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 268
Target Start/End: Original strand, 28798732 - 28798789
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttcc 268  Q
    |||||| || |||||||| |||||||||||||||||| |||||  ||| |||||||||    
T  28798732 tttttttgtggtgaccggggtttgaacctcggatcttacatatattatacattgttcc 28798789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 292
Target Start/End: Original strand, 28832174 - 28832235
Alignment:
Q  231 tttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcacaag 292  Q
    |||||||||| || |||||||||  ||||||||||||  |||||||||  ||||||||||||    
T  28832174 tttgaacctcagaccttgcatatattatgcattgttcataccaactgagttaagctcacaag 28832235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 284
Target Start/End: Complemental strand, 52086187 - 52086114
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaag 284  Q
    |||||| ||||||  ||| ||||||||| |||||||||||||||  ||||| | | ||||||||||||| ||||    
T  52086187 tttttttgtagtggtcggggtttgaaccccggatcttgcatatttcatgcagtatcccaaccaactgaagtaag 52086114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 289
Target Start/End: Complemental strand, 20481144 - 20481100
Alignment:
Q  245 cttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    |||||||| | |||||||||||| |||||||||| ||||||||||    
T  20481144 cttgcataatttatgcattgttcaaaccaactgagctaagctcac 20481100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 293
Target Start/End: Complemental strand, 25086527 - 25086479
Alignment:
Q  245 cttgcatattgtatgcattgttccaaccaactgaactaagctcacaagg 293  Q
    |||||||||| |||||||||| |  ||||||||| ||||||||||||||    
T  25086527 cttgcatattttatgcattgtccataccaactgagctaagctcacaagg 25086479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 289
Target Start/End: Complemental strand, 35308245 - 35308185
Alignment:
Q  229 agtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    |||||||||| | ||| ||| ||||  ||||||||||||  ||||||||||||||||||||    
T  35308245 agtttgaaccccagattttgtatatattatgcattgttcataccaactgaactaagctcac 35308185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 293
Target Start/End: Complemental strand, 48100766 - 48100718
Alignment:
Q  245 cttgcatattgtatgcattgttccaaccaactgaactaagctcacaagg 293  Q
    |||||||||| |||||||||| |  ||||||||| ||||||||||||||    
T  48100766 cttgcatattttatgcattgtccataccaactgagctaagctcacaagg 48100718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 213 - 293
Target Start/End: Complemental strand, 11551244 - 11551164
Alignment:
Q  213 ttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcacaagg 293  Q
    ||||||||||| |||||||||||||| || |||||||||||| ||||||||||   || ||||| | ||||||||||||||    
T  11551244 ttttggtagtggccggagtttgaaccccgaatcttgcatattttatgcattgtcgaaatcaactaagctaagctcacaagg 11551164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 230 - 288
Target Start/End: Complemental strand, 12751316 - 12751258
Alignment:
Q  230 gtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctca 288  Q
    ||||||||| || | |||||||||| |||||||||||| ||||||||||||||||||||    
T  12751316 gtttgaaccccgaaccttgcatattctatgcattgttctaaccaactgaactaagctca 12751258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 209 - 287
Target Start/End: Complemental strand, 36474842 - 36474764
Alignment:
Q  209 agttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctc 287  Q
    ||||||||||| ||| ||||| |||||||| |||| |||||||||| |||||||||| || | ||||||| ||||||||    
T  36474842 agttttttggtggtggccggaatttgaaccccggaccttgcatattttatgcattgtccctatcaactgagctaagctc 36474764  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 211 - 285
Target Start/End: Complemental strand, 42347746 - 42347672
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagc 285  Q
    |||||||||||||  ||||||||||||   ||| |||||||||| |||||||||| ||||||| |||||||||||    
T  42347746 ttttttggtagtggtcggagtttgaacactggaccttgcatattttatgcattgtcccaaccagctgaactaagc 42347672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 292
Target Start/End: Complemental strand, 10811146 - 10811065
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcacaag 292  Q
    ||||||||||||| | || ||||||||| |||| |||||||||| |||||  ||| ||||||||||||  ||||||||||||    
T  10811146 ttttttggtagtggctggggtttgaaccccggaccttgcatattttatgcgctgtcccaaccaactgagttaagctcacaag 10811065  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 213 - 293
Target Start/End: Original strand, 13100249 - 13100329
Alignment:
Q  213 ttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcacaagg 293  Q
    |||||||||||  |||||||||||||||||| |||| ||||  |||||||| | | ||||||||||  |||||||||||||    
T  13100249 ttttggtagtggtcggagtttgaacctcggaccttggatatattatgcattatccaaaccaactgagttaagctcacaagg 13100329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 289
Target Start/End: Complemental strand, 30020000 - 30019923
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    ||||||||||||| |||| ||||||| ||| || |||||||||| |||||||||| |||||||  ||| ||||||||||    
T  30020000 ttttttggtagtggccggggtttgaa-ctcagaccttgcatattttatgcattgtcccaaccagttgagctaagctcac 30019923  T

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Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 289
Target Start/End: Original strand, 30040695 - 30040772
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    ||||||||||||| |||| ||||||| ||| || |||||||||| |||||||||| |||||||  ||| ||||||||||    
T  30040695 ttttttggtagtggccggggtttgaa-ctcagaccttgcatattttatgcattgtcccaaccagttgagctaagctcac 30040772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 289
Target Start/End: Original strand, 30110173 - 30110250
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    ||||||||||||| |||| ||||||| ||| || |||||||||| |||||||||| |||||||  ||| ||||||||||    
T  30110173 ttttttggtagtggccggggtttgaa-ctcagaccttgcatattttatgcattgtcccaaccagttgagctaagctcac 30110250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 289
Target Start/End: Original strand, 30234833 - 30234910
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    ||||||||||||| |||| ||||||| ||| || |||||||||| |||||||||| |||||||  ||| ||||||||||    
T  30234833 ttttttggtagtggccggggtttgaa-ctcagaccttgcatattttatgcattgtcccaaccagttgagctaagctcac 30234910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 292
Target Start/End: Original strand, 31397772 - 31397853
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcacaag 292  Q
    ||||||||| ||| |||| ||| ||| |||||| ||| |||||| |||||||||| || ||||| ||| |||||||||||||    
T  31397772 ttttttggtggtggccggggttcgaatctcggaccttacatattttatgcattgtccctaccaattgagctaagctcacaag 31397853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 289
Target Start/End: Complemental strand, 29600015 - 29599939
Alignment:
Q  213 ttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    |||||||||||  ||||||||||||| |||| |||| ||||  |||||||| | | |||||||||| ||||||||||    
T  29600015 ttttggtagtggtcggagtttgaaccccggaccttggatatattatgcattatccaaaccaactgagctaagctcac 29599939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 289
Target Start/End: Complemental strand, 31582230 - 31582186
Alignment:
Q  245 cttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    |||||||||| |||||||||||| |||||||||| ||||||||||    
T  31582230 cttgcatattctatgcattgttcaaaccaactgagctaagctcac 31582186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 274
Target Start/End: Complemental strand, 4180775 - 4180712
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaa 274  Q
    |||||||||||||  ||| ||||||||| |||| |||||||||| |||||||| | ||||||||    
T  4180775 ttttttggtagtggtcggggtttgaaccccggaccttgcatattttatgcattatcccaaccaa 4180712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 231 - 278
Target Start/End: Original strand, 36193947 - 36193994
Alignment:
Q  231 tttgaacctcggatcttgcatattgtatgcattgttccaaccaactga 278  Q
    |||||||||| || |||||||||| |||||||||||| ||||||||||    
T  36193947 tttgaacctcagaccttgcatattttatgcattgttcaaaccaactga 36193994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 289
Target Start/End: Complemental strand, 21929540 - 21929471
Alignment:
Q  219 tagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    ||||| |||| ||||||||| | || |||| ||||| |||||||||| |||||||||||| ||||||||||    
T  21929540 tagtggccggggtttgaacccctgaccttgtatattttatgcattgt-ccaaccaactgagctaagctcac 21929471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 289
Target Start/End: Complemental strand, 26999188 - 26999110
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    |||||| || ||| |||||||||||||| | || |||||||||  ||||||||||  | ||||||||||||||| ||||    
T  26999188 tttttttgtggtggccggagtttgaaccgcagaccttgcatatattatgcattgtctctaccaactgaactaagttcac 26999110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 289
Target Start/End: Complemental strand, 28771660 - 28771582
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    ||||||||| ||| |||| ||| ||||| ||||||||||||||  |||||||||| |  ||||||||| |||| |||||    
T  28771660 ttttttggtggtgtccggggttcgaaccgcggatcttgcatatattatgcattgtccttaccaactgagctaaactcac 28771582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 289
Target Start/End: Complemental strand, 32887405 - 32887359
Alignment:
Q  243 atcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    |||||||||||| |||| |||||||||| ||||||| ||||||||||    
T  32887405 atcttgcatattttatgtattgttccaatcaactgagctaagctcac 32887359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 289
Target Start/End: Original strand, 37132983 - 37133041
Alignment:
Q  231 tttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    |||||||||  || ||| |||||| |||||||||| |||||||||||| ||||||||||    
T  37132983 tttgaaccttagaccttacatattttatgcattgtcccaaccaactgagctaagctcac 37133041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 265
Target Start/End: Complemental strand, 42791373 - 42791319
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgt 265  Q
    ||||||||||||| |||| ||||||||| |||| |||||||||  ||||||||||    
T  42791373 ttttttggtagtggccggggtttgaaccccggaccttgcatatattatgcattgt 42791319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 288
Target Start/End: Complemental strand, 43424702 - 43424660
Alignment:
Q  246 ttgcatattgtatgcattgttccaaccaactgaactaagctca 288  Q
    ||||||||| ||||||||||||||| ||||||| |||||||||    
T  43424702 ttgcatattttatgcattgttccaatcaactgagctaagctca 43424660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 283
Target Start/End: Complemental strand, 744598 - 744529
Alignment:
Q  214 tttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaa 283  Q
    |||||||||| |||  |||||||||||  | |||||||||| |||||||||| | ||| |||||||||||    
T  744598 tttggtagtgtccgaggtttgaacctcataccttgcatattttatgcattgtcctaactaactgaactaa 744529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 290
Target Start/End: Original strand, 38603981 - 38604026
Alignment:
Q  245 cttgcatattgtatgcattgttccaaccaactgaactaagctcaca 290  Q
    |||||||||| ||| |||||| |||||||||||| |||||||||||    
T  38603981 cttgcatattttatacattgtcccaaccaactgagctaagctcaca 38604026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 300
Target Start/End: Complemental strand, 41356230 - 41356141
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcacaagggcaaaat 300  Q
    |||||| ||||||  ||| ||||||||| || | |||| ||||| ||||||||||  |||| |||||||||||||| || ||| ||||||    
T  41356230 tttttttgtagtggtcggggtttgaaccccgaaccttgtatattttatgcattgtctcaactaactgaactaagctaacgaggacaaaat 41356141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 289
Target Start/End: Complemental strand, 42714496 - 42714439
Alignment:
Q  232 ttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    |||||||  |||||| ||||||| |||||||||| |  ||||||||||||||||||||    
T  42714496 ttgaaccatggatctggcatattttatgcattgtccataccaactgaactaagctcac 42714439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 289
Target Start/End: Original strand, 346109 - 346185
Alignment:
Q  213 ttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    |||||||||||  ||| |||||||||  ||| ||| |||||  |||||||| ||| |||||||||| ||||||||||    
T  346109 ttttggtagtggtcggggtttgaaccctggaccttacatatattatgcattattcaaaccaactgagctaagctcac 346185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 289
Target Start/End: Original strand, 44496685 - 44496761
Alignment:
Q  213 ttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    ||||||||||| |||||||| ||||| | | ||||||||||  |||| ||||| |  ||||||||| ||||||||||    
T  44496685 ttttggtagtgtccggagttcgaacccctgttcttgcatatattatgtattgtccttaccaactgagctaagctcac 44496761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 298
Target Start/End: Complemental strand, 45032752 - 45032684
Alignment:
Q  230 gtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcacaagggcaaa 298  Q
    |||||| |||| ||||||||||||  |||||||||| || |||||||||  ||||||||| ||| ||||    
T  45032752 gtttgagcctcagatcttgcatatattatgcattgtccctaccaactgaggtaagctcacgaggacaaa 45032684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 286
Target Start/End: Original strand, 3577 - 3634
Alignment:
Q  230 gtttgaacctcggatctt-gcatattgtatgcattgttccaaccaactgaactaagct 286  Q
    ||||||||| |||| ||| ||||||| |||||||||| ||||||||||||||||||||    
T  3577 gtttgaaccccggacctttgcatattttatgcattgtcccaaccaactgaactaagct 3634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 289
Target Start/End: Original strand, 9529 - 9593
Alignment:
Q  225 ccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    |||| ||||||||| |||| |||| |||| ||||||||||| || ||||||||| ||||||||||    
T  9529 ccggcgtttgaaccacggaccttgtatatagtatgcattgtcccgaccaactgagctaagctcac 9593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 289
Target Start/End: Complemental strand, 40389 - 40310
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttc-caaccaactgaactaagctcac 289  Q
    ||||||||| |||  |||||||||||||||||| | |||||||| |||||||||| |  ||||||||||  |||||||||    
T  40389 ttttttggtggtggtcggagtttgaacctcggaccatgcatattttatgcattgtgcaaaaccaactgagataagctcac 40310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 293
Target Start/End: Complemental strand, 161219 - 161137
Alignment:
Q  211 ttttttggtagtgaccggagtttgaacctcggatcttgcatattgtatgcattgttccaaccaactgaactaagctcacaagg 293  Q
    ||||||||| |||  ||| ||||||||| || | |||||||||| |||||||||| |  |||||||||  |||||||||||||    
T  161219 ttttttggtggtggtcggggtttgaaccccgaaccttgcatattttatgcattgtccataccaactgagttaagctcacaagg 161137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 289
Target Start/End: Complemental strand, 171205 - 171159
Alignment:
Q  243 atcttgcatattgtatgcattgttccaaccaactgaactaagctcac 289  Q
    |||||||||||| |||||||||||| ||||||| || ||||||||||    
T  171205 atcttgcatattttatgcattgttcaaaccaaccgagctaagctcac 171159  T

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Target: scaffold0012 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 289
Target Start/End: Complemental strand, 118859 - 118819
Alignment:
Q  249 catattgtatgcattgttccaaccaactgaactaagctcac 289  Q
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T  118859 catattttatgcattgttcaaaccaactgagctaagctcac 118819  T

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