View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11856_low_52 (Length: 313)
Name: NF11856_low_52
Description: NF11856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11856_low_52 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 111; Significance: 5e-56; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 17 - 198
Target Start/End: Original strand, 6113113 - 6113283
Alignment:
| Q |
17 |
accttaaactattttatgcgtgttggaaatggcttttggttccgctaagttagtttcttgtttaatacaagaataataattcaatctaacaaggcatagc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6113113 |
accttaaactattttatgcgtgttggaaatggcttttggttccgctaagttagtttcttgtttaatacaa-----------caatctaacaaggcatagc |
6113201 |
T |
|
| Q |
117 |
atga-aaagtgtcctcatgttttcgtcatcgtttcatcttgtccnnnnnnngccacataacttccctcctacgtgtctatcca |
198 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
6113202 |
atgagaaagtgtcctcatgttttcgtcatcgtttcatcttgtcc-ttttttgccacataacttccctcctacgtgtctatcca |
6113283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 6113348 - 6113398
Alignment:
| Q |
263 |
tttacacataaatactagaatctgttaacattgttacgacagattctgaat |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
6113348 |
tttacacataaatactagaatctgttaacatggttacaacagattctgaat |
6113398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University