View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11856_low_53 (Length: 310)
Name: NF11856_low_53
Description: NF11856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11856_low_53 |
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Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 7 - 291
Target Start/End: Complemental strand, 30050718 - 30050434
Alignment:
| Q |
7 |
tggagaagcatagggagatgcaatgaagtagtagggtccaaattcatgtggaggcttgtatgtttgattactcattgaaaatccaaatctttgaacttct |
106 |
Q |
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| T |
30050718 |
tggaaaagcataaggagatgcaatgaagtagtagggtccaaattcatgtggaggcttgtatgtttgattactcaatgaaaatccaaatctttgaacttct |
30050619 |
T |
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| Q |
107 |
gacctattaaaatattgtcctgttggtggaaagagtgctagttgcatttgtagataatcatcatcattgaaaaaagggttttgtaaagaaactgaaccag |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
30050618 |
gacctattaaaatattgtcctgttggtggaaagagtgctagttgcatttgaagataatcatcaccattgaaaaaagggttttgtaaagaaactgaaccag |
30050519 |
T |
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| Q |
207 |
gtgttaaacccaatttctcccataagctcttttcaagtgaatggaaaatagttatattagacaattctctaaacaaaggtcctct |
291 |
Q |
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| T |
30050518 |
gtgttaaacccaatttctcccataagctcttttcaagtgaatggaaaatagttatattagacaattctctaaacaaaggtcctct |
30050434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 7 - 291
Target Start/End: Complemental strand, 30034711 - 30034427
Alignment:
| Q |
7 |
tggagaagcatagggagatgcaatgaagtagtagggtccaaattcatgtggaggcttgtatgtttgattactcattgaaaatccaaatctttgaacttct |
106 |
Q |
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|||| ||||||| ||| ||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
30034711 |
tggaaaagcataaggaaatgcaatgaagtaatagggtccaaattcgtgtggaggcttatatgtttgattactcaatgaaaatccaattctttgaacttct |
30034612 |
T |
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| Q |
107 |
gacctattaaaatattgtcctgttggtggaaagagtgctagttgcatttgtagataatcatcatcattgaaaaaagggttttgtaaagaaactgaaccag |
206 |
Q |
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| T |
30034611 |
gtcctgttaaaatattgtcctgttggtggaaagagtgctagttgcatttgaagataatcgtcaccgttgaaaaaagggttttgtaaagaaactgagccag |
30034512 |
T |
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| Q |
207 |
gtgttaaacccaatttctcccataagctcttttcaagtgaatggaaaatagttatattagacaattctctaaacaaaggtcctct |
291 |
Q |
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|||||||||| || ||| ||||||| ||| ||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
30034511 |
gtgttaaacctaacttcacccataaactcatttcaagcgaatggaaaatagttatattcgacaattctctgaacaaaggtcctct |
30034427 |
T |
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