View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11856_low_54 (Length: 307)
Name: NF11856_low_54
Description: NF11856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11856_low_54 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 294
Target Start/End: Original strand, 3246821 - 3247096
Alignment:
| Q |
18 |
aaatgatgggatgaatatatataaaacaaacaaagaattttgatatattaatgctttgaaaaatgtcacaatgtgctaatagtttatagttttatttatt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3246821 |
aaatgatgggatgaatatatataaaacaaacaaagaattttgatgtattaatgctttgaaaaatgtcacaatgtgctaatagtttatagttttatttatt |
3246920 |
T |
|
| Q |
118 |
tggaaaatatatataacgtagcgtttatgatctcatcttgatgacat--accaattggttgaacactttttccgtttgaaaagaaagttttcttttgatt |
215 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3246921 |
tgg--aatatatataacgtagcgtttatgatctcatcttgatgacatgagccaattggttgaacactttttccgtttgaaaagaaagttttcttttgatt |
3247018 |
T |
|
| Q |
216 |
ttccaatgataatgtccccaaacgtgtttcttgggttcaaagataattaatactaatactactacactccaatacgtct |
294 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3247019 |
ttcc-atgataatgtccccaaacgtgtttcttgggttcaaagataattaatactaatactactacactccaataagtct |
3247096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University