View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11856_low_55 (Length: 299)
Name: NF11856_low_55
Description: NF11856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11856_low_55 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 24098818 - 24098525
Alignment:
| Q |
1 |
tggatctatagggtttaattcaactgtagtccagttcaaaagtaccgtataaagtcagctttgaattatttttcatccgatctcaaatataaacatacat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
24098818 |
tggatctatagggtttaattcaactgtagtccagttcaaaagtaccgtataaagtcagctttgaattatttttcatccggtctcaaatataaacatatat |
24098719 |
T |
|
| Q |
101 |
tacgccaataaacgtgagtgtatttagttcaaattttagattaaatatatcaatttttgttgatttaactttcctttatatttaagatcggaagaagtat |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
24098718 |
tacgccaacaaacgtgagtgtatttagttcaaattttagactaaatatatcaatttttgttgatttaacttttgtttatatttaagactggaagaagtat |
24098619 |
T |
|
| Q |
201 |
tttataaaactttaattttatctatctatcta----ctaccaacagtttttaacaatttcaaaaagttttgaggtcatgaaatcaactgatgtc |
290 |
Q |
| |
|
|| ||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
24098618 |
ttcataaaacattaattctatctatctatctatctgctaccaacagtttttaacaatttcaaaaagttttgaggtcatgaaatcaactaatgtc |
24098525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 121 - 183
Target Start/End: Original strand, 6834210 - 6834272
Alignment:
| Q |
121 |
tatttagttcaaattttagattaaatatatcaatttttgttgatttaactttcctttatattt |
183 |
Q |
| |
|
||||||| |||||||||| || ||| ||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
6834210 |
tatttagatcaaattttatatcaaacatatcaatttttgttgattcaacttttctttatattt |
6834272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 181
Target Start/End: Original strand, 2981215 - 2981255
Alignment:
| Q |
142 |
taaatatatcaatttttgttgatttaactttc-ctttatat |
181 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
2981215 |
taaatacatcaatttttgttgatttaactttctctttatat |
2981255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 183
Target Start/End: Complemental strand, 9065796 - 9065732
Alignment:
| Q |
119 |
tgtatttagttcaaattttagattaaatatatcaatttttgttgatttaactttcctttatattt |
183 |
Q |
| |
|
|||||||| || |||||||||| ||||| ||||||||||||||| |||||||| ||||||||| |
|
|
| T |
9065796 |
tgtatttaatttaaattttagacgaaatacatcaatttttgttgacttaacttttgtttatattt |
9065732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 168
Target Start/End: Original strand, 46330915 - 46330955
Alignment:
| Q |
128 |
ttcaaattttagattaaatatatcaatttttgttgatttaa |
168 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
46330915 |
ttcaaaatttagactaaatatatcaatttttgttgatttaa |
46330955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University