View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11856_low_6 (Length: 679)

Name: NF11856_low_6
Description: NF11856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11856_low_6
NF11856_low_6
[»] chr8 (1 HSPs)
chr8 (20-672)||(29116323-29116977)


Alignment Details
Target: chr8 (Bit Score: 564; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 20 - 672
Target Start/End: Complemental strand, 29116977 - 29116323
Alignment:
Q  20 attagagagctaccactggttccttccttaagtgccaagatattggagctcctctaactagaaaaatgtatcttgcagtagattttctgtcatctttgtg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||    
T  29116977 attagagagctaccactggttccttccttaagtgccaagatattggagctcctctaactagaaaaatgtattttgcagtagattttctgtcatctttttg 29116878  T
Q  120 accacagcaatttgaatcaatatacgatatacccaagcaatttgaagatttttccatgatcaactcctagaaacaaaatatcactatcaattgtgtctat 219  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  29116877 accgcagcaatttgaatcaatatacgatatacccaagcaatttgaagatttttccatgatcaactcctagaaacaaggtatcactatcaattgtgtctat 29116778  T
Q  220 gatgtatctcaacattctctttgttgctactaagtgagacgattttggcttctccacgaatctactcacaatgcttacactatatgtcaaatatggcttt 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  29116777 gatgtatctcaacattctctttgttgctactaagtgagacgattttggcttctccaggaatctactcacaatgcctacactatatgtcaaatatggcttt 29116678  T
Q  320 gtgttgcaaaggtatcttcgatgatccaataagtcttttgtattgagttggatccacttctctctcttttatttcatttcatagttttggtcttggttca 419  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||    
T  29116677 gtgttgcaaaggtatcttcgatgatccaatgagtcttttgtattgagttggatccacttctttctcttttatttcttttgatagttttggtcttggttca 29116578  T
Q  420 atgggggttacatcaagatttcaatactccatctaaaaccttttaagaatttcactagc--atatctcttttgatgaattagaagccctacttgttcttt 517  Q
    || ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  29116577 ataggggttacatcaagattgcaatattccatctaaaaccttttaagaatttcactagcatatatctcttttgatgaattagaagccctacttgttcttt 29116478  T
Q  518 gaaactccatggcaaggaaatatgagatgtgaagtagatcaaccatctcaaattccttcatcaaatcattcttaaagtcgtttatgtaagatccattgct 617  Q
    |||||||||||  |||||||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  29116477 gaaactccatgcgaaggaaatatgaaatgtgacctagatcaaccatctcaaattccttcatcaaatcattcttaaattcgtttatgtaagatccattgct 29116378  T
Q  618 acatgtgataagaaaatcatttacataaagatatagaatgattacccctttgctt 672  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29116377 acatgtgataagaaaatcatttacataaagatatagaatgattacccctttgctt 29116323  T

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