View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11856_low_7 (Length: 648)
Name: NF11856_low_7
Description: NF11856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11856_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 226 - 640
Target Start/End: Original strand, 53621101 - 53621515
Alignment:
| Q |
226 |
cgatccatagattcaggctctttgaaaggatttccaaagaatacatatgaagccggggctcaggtaaattaccttttaaaagatgaacatagagctgatc |
325 |
Q |
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| T |
53621101 |
cgatccatagattcaggctctttgaaaggatttcctaagaatacatatgaagccggggctcaggtaacttaccttttaaaagatgaacatagagctgatc |
53621200 |
T |
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| Q |
326 |
tatggctatatgttatagagccttgtgttttcccgctttcactaattaaaaaatttgtcaaccactcattgcagaatcttgtttgtgctaaaaatttagt |
425 |
Q |
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| T |
53621201 |
tatggctatatgttatagagccttgtgttttcccgctttcactaattaaaaaatttgtcaaccactcattgcagaatcttgtttgtgctaaaaatttagt |
53621300 |
T |
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| Q |
426 |
catagacaagagtattcaaacagcttacatacatgccatcagatctgctcagcattttatttatatcgagaatcaatacttcattggatcatcctttgct |
525 |
Q |
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| T |
53621301 |
catagacaagagtattcaaacagcttacatacatgccatcagatctgctcagcattttatttatatcgagaatcaatacttcattggatcatcctttgct |
53621400 |
T |
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| Q |
526 |
tggccatcttacaaagaagcaggttttggcagaatattgatatttactcatgtaacttgttgcatctgcttacagttttgattgctcatactttagcgtt |
625 |
Q |
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| T |
53621401 |
tggccatcttacaaagaagcaggttttggcagaatattgatatttactcatgtaacttgttgcatctgcttacagttttgattgctcatactttagcgtt |
53621500 |
T |
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| Q |
626 |
tgtaaaacctatgct |
640 |
Q |
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| T |
53621501 |
tgtaaaacctatgct |
53621515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 20 - 162
Target Start/End: Original strand, 53620894 - 53621036
Alignment:
| Q |
20 |
caagttagaacgcatctcttggattcttagtccttctgaatcaatgtcaaatgatgatcctgagttatgggtttcaaaggaagatgaccctcaaaattgg |
119 |
Q |
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| T |
53620894 |
caagttagaacgcatctcttggattcttagtccttctgaatcaatgtcaaatgatgatcctgagttatgggtttcaaaggaagatgaccctcaaaattgg |
53620993 |
T |
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| Q |
120 |
catattcaggttaccagttcactatctttagagtacagtttct |
162 |
Q |
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| T |
53620994 |
catattcaggttaccagttcactatctttagagtacagtttct |
53621036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 394 - 539
Target Start/End: Original strand, 9154767 - 9154912
Alignment:
| Q |
394 |
ttgcagaatcttgtttgtgctaaaaatttagtcatagacaagagtattcaaacagcttacatacatgccatcagatctgctcagcattttatttatatcg |
493 |
Q |
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||||||||||| | |||||||||||||| ||||| || || |||||||||| || || || || |||||||||||||| ||||| |||||||| | |
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| T |
9154767 |
ttgcagaatctcatatgtgctaaaaatttgactatagaaaaaagcattcaaacaggatatatccaagctatcagatctgctcaacatttcatttatattg |
9154866 |
T |
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| Q |
494 |
agaatcaatacttcattggatcatcctttgcttggccatcttacaa |
539 |
Q |
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| T |
9154867 |
aaaaccaatactttattggatcttcatatgcatggccatcttacaa |
9154912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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