View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11856_low_8 (Length: 626)
Name: NF11856_low_8
Description: NF11856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11856_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 388; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 43 - 614
Target Start/End: Original strand, 40931694 - 40932250
Alignment:
| Q |
43 |
attgatgggcttgtttgttcttcatcatgcaaattctttgaatgctttgttgttttcttatgcaaattgttgatgcaactgatttatattgcaannnnnn |
142 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
40931694 |
attgatgggcttgtttgttcttcatcatacaaattctttgaatgctttgttgttttcttgtgcaaattgttgatgcaactgatttatattgcaatttttt |
40931793 |
T |
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| Q |
143 |
ncatggtttaggcttagactttaatgtttaggatttacaatatatgattgttcctgttgtatcaaaggtttttcatagaggaggtttgttctttatgatg |
242 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
40931794 |
tcatggtttagtcttagactttaatgtttaggatttacaatatatgattgttcctgttgtatcaaaggtttttcttagaggaggtttgttctttatgatg |
40931893 |
T |
|
| Q |
243 |
caaattcttgaatgcttccgnnnnnnnnatttgacatgtgtaaattttattgtaactgttcctgttttgtattgcaannnnnnnnatgattgaggtttaa |
342 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
40931894 |
caaattcttgaatgcttccgttttttttatttgacatgtgtaaattttattgtaactgttcctgttttgtattgcaattttttttatgatttaggtttaa |
40931993 |
T |
|
| Q |
343 |
aatttgtgactgttcatgttttagacggcaataaatcttgttggtcagagaaacgtttccatgtagtagattttctcatactgagttttgatggaatatt |
442 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
40931994 |
aatttgtgactgttcatgttttagacggcaataaatcttgttggtcagagaaacgtttccatgtagtagattttctcacactgagttttgatgga----- |
40932088 |
T |
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| Q |
443 |
ttgaagttcagattctaattgtttatttatagtctatttcag-nnnnnnnnnccccttctatttgatgcttacatggttcgatcaatgagtcacagcagt |
541 |
Q |
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|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40932089 |
-----------attctaattgtttatttatagtctatatcagttttttttttccccttctatttgatgcttacatggttcgatcaatgagtcacagcagt |
40932177 |
T |
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| Q |
542 |
gctgttattttgcacttttatccattttcgatgcatgtgcaattttgtttgatttctattcctcatgtgttct |
614 |
Q |
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| T |
40932178 |
gctgttattttgcacttttatccattttcgatgcatgtgcaattttgtttgatttctattcctcatgtgttct |
40932250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 43 - 173
Target Start/End: Original strand, 40939662 - 40939792
Alignment:
| Q |
43 |
attgatgggcttgtttgttcttcatcatgcaaattctttgaatgctt-tgttgttttcttatgcaaattgttgatgcaactgatttatattgcaannnnn |
141 |
Q |
| |
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||||||| |||||||| |||||||| ||||||||| || |||||||| |||| ||||||| ||||| || ||||||||||||||||||||||||| |
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| T |
40939662 |
attgatgagcttgtttattcttcatgatgcaaattgtt-gaatgcttctgtttttttcttgtgcaagttattgatgcaactgatttatattgcaattttt |
40939760 |
T |
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| Q |
142 |
nncatggtttaggcttagactttaatgtttag |
173 |
Q |
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||||||||||| ||||| |||||||||||| |
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| T |
40939761 |
ttcatggtttaggtttagagtttaatgtttag |
40939792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 424 - 479
Target Start/End: Original strand, 40940088 - 40940143
Alignment:
| Q |
424 |
tgagttttgatggaatattttgaagttcagattctaattgtttatttatagtctat |
479 |
Q |
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||||| |||||||| |||||||||||||| |||||||||||||||||||| ||||| |
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| T |
40940088 |
tgagtattgatggagtattttgaagttcatattctaattgtttatttatattctat |
40940143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 358 - 420
Target Start/End: Original strand, 55061863 - 55061925
Alignment:
| Q |
358 |
atgttttagacggcaataaatcttgttggtcagagaaacgtttccatgtagtagattttctca |
420 |
Q |
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| T |
55061863 |
atgttttagatggaaataaattttattgctcagagaaacgtttccatgtagtagattttctca |
55061925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 514 - 608
Target Start/End: Original strand, 55062040 - 55062134
Alignment:
| Q |
514 |
catggttcgatcaatgagtcacagcagtgctgttattttgcacttttatccattttcgatgcatgtgcaattttgtttgatttctattcctcatg |
608 |
Q |
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||||||||||||||| | ||| ||| | ||||| ||||||| |||||||| ||||| |||||||||||||| ||||||| ||||| ||||||| |
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| T |
55062040 |
catggttcgatcaataaatcatagcggggctgtaattttgcgcttttatcggttttcagtgcatgtgcaatttagtttgatatctatccctcatg |
55062134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 583 - 614
Target Start/End: Original strand, 55062605 - 55062636
Alignment:
| Q |
583 |
attttgtttgatttctattcctcatgtgttct |
614 |
Q |
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| T |
55062605 |
attttgtttgatttctattcctcatgtgttct |
55062636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 43 - 77
Target Start/End: Original strand, 55061581 - 55061615
Alignment:
| Q |
43 |
attgatgggcttgtttgttcttcatcatgcaaatt |
77 |
Q |
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||||||||||||||||| ||||||||||||||||| |
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| T |
55061581 |
attgatgggcttgtttgatcttcatcatgcaaatt |
55061615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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