View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11856_low_83 (Length: 238)
Name: NF11856_low_83
Description: NF11856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11856_low_83 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 33356568 - 33356789
Alignment:
| Q |
1 |
ccgctgtgacagggtttgggtttgggttaataaagatgaaattgtctaccaggttccaacaattggatagaaagtgtct--atactcatcatggaattta |
98 |
Q |
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| T |
33356568 |
ccgctgtgacagggtttgggtttggattaataaagatgaaattgtctaccaggttccaacaattggatagaaagtgtctctatactcatcatggaattta |
33356667 |
T |
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| Q |
99 |
acttatatacatgctccaagttataaatttaatgtttcaataaggagctatagtttctttccaattgtattctactatgtgttgttatttaaacatacat |
198 |
Q |
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| T |
33356668 |
acttgtatacatgctccaagttataaatttaatgtttcaataaggagctatagtttctttccaattgtattctactatg---tgttatttaaacatacat |
33356764 |
T |
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| Q |
199 |
gttctgcattgtaaatgcatatata |
223 |
Q |
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| T |
33356765 |
gttctgcattgtaaatgcatatata |
33356789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 168
Target Start/End: Original strand, 33382069 - 33382223
Alignment:
| Q |
2 |
cgctgtgacagggtttgggtttgggttaataaagatgaaattgtctaccaggttccaacaattggatagaaagtgtctatactcatcatggaatttaact |
101 |
Q |
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| T |
33382069 |
cgctttgacagggttagggtttgggttgataaagaaggaattgtgactcaggttccaacaattggataaaaagtgtc----------atggaattgaact |
33382158 |
T |
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| Q |
102 |
tatatacatgctccaagttataaatttaatgtttcaataaggagctatagtttctttccaattgtat |
168 |
Q |
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| T |
33382159 |
tgtatatatgctccaagttataaatttaatgcttcaataaggagctat--tttctttccaattgtat |
33382223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 33400332 - 33400405
Alignment:
| Q |
5 |
tgtgacagggtttgggtttgggttaataaagatgaaattgtctaccaggttccaacaattggatagaaagtgtc |
78 |
Q |
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| T |
33400332 |
tgtgatagggtttgggtttgggttgacaaagatggaattgtctttaaggttccaacaattggatagaaagtgtc |
33400405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 168
Target Start/End: Original strand, 33400481 - 33400545
Alignment:
| Q |
102 |
tatatacatgctccaagttataaatttaatgtttcaataaggagctatagtttctttccaattgtat |
168 |
Q |
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| T |
33400481 |
tatatatatgctccaagtcataagtttaatgtttcaataaggagc--tagtttctttttaattgtat |
33400545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 39306993 - 39306839
Alignment:
| Q |
1 |
ccgctgtgacagggtttgggtttgggttaataaagatgaaattgtctaccaggttccaacaattggatagaaagtgtctatactcatcatggaatttaac |
100 |
Q |
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| T |
39306993 |
ccgctgtgacagggttagggtttgggttgataaagatggaattgtctatcaggttccgataattggatagaaagtg----------tcatggaattgaac |
39306904 |
T |
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| Q |
101 |
ttatatacatgctccaagttataaatttaatgtttcaataaggagctatagtttctttccaattgta |
167 |
Q |
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| T |
39306903 |
ttgaatatatgctccaagttataaatttaaggtttcaataaggagc--tggtttatttccaattgta |
39306839 |
T |
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