View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11856_low_84 (Length: 238)
Name: NF11856_low_84
Description: NF11856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11856_low_84 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 5 - 224
Target Start/End: Original strand, 51300568 - 51300784
Alignment:
| Q |
5 |
tgaaagagtgacataactgcacctcccaattcattctcaataactcttgaacacaagcaatgccagaaccataacaatggtacttgttaaccgatttagt |
104 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
51300568 |
tgaaagagtgacataactgcacctcccaattcattctcaataactcttgaacacaagcaatgccaaaaccataacaatggtacttgttaaccgatttagt |
51300667 |
T |
|
| Q |
105 |
aacaatatcaataatagttttcgagtctggataacaacaaatttgattgcaacccatattattagaaagcttcagaccaataaataatgtcataagttcc |
204 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
51300668 |
aacaatatcaataataattttcgagtctggataacaacaaatttgattgcaacccatattat---aaagcttcagaccaataaacaatgtcataagttcc |
51300764 |
T |
|
| Q |
205 |
gaataagtattattgaaaat |
224 |
Q |
| |
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||| |||||||||||||||| |
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|
| T |
51300765 |
gaaaaagtattattgaaaat |
51300784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 34721542 - 34721350
Alignment:
| Q |
1 |
tctctgaaagagtgacataactgcacctcccaattcattctcaataactcttgaacacaagcaatgccagaaccataacaatggtacttgttaaccgatt |
100 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||| |||||| || || |||||||||||||||| | ||||| |||| |||| ||||||||||| || | |
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| T |
34721542 |
tctctgagagagtggcataactgcacctcccaatccattctaaaaaaatcttgaacacaagcaacgacagaagcatagcaatagtacttgttaatcgtct |
34721443 |
T |
|
| Q |
101 |
tagtaacaatatcaataatagttttcgagtctggataacaacaaatttgattgcaacccatattattagaaagcttcagaccaataaataatg |
193 |
Q |
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||| ||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||| |||||||| ||||| ||| |||| |
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| T |
34721442 |
tagaaacaatatcaataatagttttcgagtctgaatagcaacaaacttgattgcaacccatattattagcaagcttcaaaccaaaaaacaatg |
34721350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 9 - 219
Target Start/End: Complemental strand, 19998477 - 19998268
Alignment:
| Q |
9 |
agagtgacataactgcacctcccaattcattctcaataactcttgaacacaagcaatgccagaaccataacaatggtacttgttaaccgatttagtaaca |
108 |
Q |
| |
|
|||||||||||||||||| || |||| |||||||||||||| ||||||||||| |||| |||| |||| ||||||||||||||||| | ||||||||| |
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| T |
19998477 |
agagtgacataactgcac-tctcaatccattctcaataacttttgaacacaagtaatgatagaagcatagcaatggtacttgttaactggcttagtaaca |
19998379 |
T |
|
| Q |
109 |
atatcaataatagttttcgagtctggataacaacaaatttgattgcaacccatattattagaaagcttcagaccaataaataatgtcataagttccgaat |
208 |
Q |
| |
|
||||||||||||||||| ||||||| || |||||||||||||||||||| ||||| |||| |||||||||| || ||| |||| |||||| |||| || |
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| T |
19998378 |
atatcaataatagtttttgagtctgaatggcaacaaatttgattgcaaccaatattcttagcaagcttcagaaaaagaaacaatgccataagctccgcat |
19998279 |
T |
|
| Q |
209 |
aagtattattg |
219 |
Q |
| |
|
||||||||||| |
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|
| T |
19998278 |
aagtattattg |
19998268 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 5 - 217
Target Start/End: Complemental strand, 45646214 - 45646002
Alignment:
| Q |
5 |
tgaaagagtgacataactgcacctcccaattcattctcaataactcttgaacacaagcaatgccagaaccataacaatggtacttgttaaccgatttagt |
104 |
Q |
| |
|
|||||||||||||||||| || |||||||| |||||| | |||||| |||||| |||||||| || || |||||||||||||||||||||| | ||||| |
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|
| T |
45646214 |
tgaaagagtgacataactacatctcccaatccattcttagtaactcctgaacataagcaatgacaaaagcataacaatggtacttgttaactggcttagt |
45646115 |
T |
|
| Q |
105 |
aacaatatcaataatagttttcgagtctggataacaacaaatttgattgcaacccatattattagaaagcttcagaccaataaataatgtcataagttcc |
204 |
Q |
| |
|
|||||||||| ||||||||||||| ||| ||| |||||| |||||||||||| ||||||||| |||||||||||||| ||| |||| ||| |||||| |
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| T |
45646114 |
aacaatatcattaatagttttcgattcttaataggaacaaacttgattgcaaccgatattattaacaagcttcagaccaagaaacaatgccatcagttcc |
45646015 |
T |
|
| Q |
205 |
gaataagtattat |
217 |
Q |
| |
|
| ||||||||||| |
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|
| T |
45646014 |
gcataagtattat |
45646002 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 26143949 - 26143785
Alignment:
| Q |
1 |
tctctgaaagagtgacataactgcacctcccaattcattctcaataactcttgaacacaagcaatgccagaaccataacaatggtacttgttaaccgatt |
100 |
Q |
| |
|
||||||| |||||||||||| || ||||||||||||||||||||||||||||||||| | |||||| |||| ||| | ||||||||||||||||| | |
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| T |
26143949 |
tctctgatagagtgacataattgtacctcccaattcattctcaataactcttgaacatatgcaatgacagaggcattgtagtggtacttgttaaccgact |
26143850 |
T |
|
| Q |
101 |
tagtaacaatatc-aataatagttttcgagtctggataacaacaaatttgattgcaacccatatt |
164 |
Q |
| |
|
||||||||||||| || |||||||||| ||||| |||||||||||||||||||||||||||||| |
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|
| T |
26143849 |
tagtaacaatatcaaaaaatagttttcaagtctaaataacaacaaatttgattgcaacccatatt |
26143785 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 164
Target Start/End: Original strand, 1515014 - 1515162
Alignment:
| Q |
16 |
cataactgcacctcccaattcattctcaataactcttgaacacaagcaatgccagaaccataacaatggtacttgttaaccgatttagtaacaatatcaa |
115 |
Q |
| |
|
|||||||||||||||| || |||||| |||||||||| || |||||||| || || ||||| | ||| |||||||||| | |||||| ||||||||| |
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| T |
1515014 |
cataactgcacctccccatccattcttaataactcttttgcagaagcaatgacaaaaacataatagtggcacttgttaacaggcttagtagcaatatcaa |
1515113 |
T |
|
| Q |
116 |
taatagttttcgagtctggataacaacaaatttgattgcaacccatatt |
164 |
Q |
| |
|
|| |||||||||||| | ||| ||||||| ||||||||||| ||||| |
|
|
| T |
1515114 |
tagtagttttcgagttcgaataggaacaaatatgattgcaaccaatatt |
1515162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 42296518 - 42296433
Alignment:
| Q |
9 |
agagtgacataactgcacctcccaattcattctcaataactcttgaacacaagcaatgccagaaccataacaatggtacttgttaa |
94 |
Q |
| |
|
|||||| ||||| ||||||| ||||| |||||||||||| || | ||||||||||||| | ||| |||| ||| | |||||||||| |
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|
| T |
42296518 |
agagtggcataaatgcaccttccaatccattctcaataaatcctaaacacaagcaatgactgaagcatagcaacgatacttgttaa |
42296433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 130
Target Start/End: Complemental strand, 40458490 - 40458434
Alignment:
| Q |
74 |
cataacaatggtacttgttaaccgatttagtaacaatatcaataatagttttcgagt |
130 |
Q |
| |
|
|||||| | |||||||||||| || | ||||||||||||||||||||||||||||| |
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|
| T |
40458490 |
cataacgacggtacttgttaaacggctaagtaacaatatcaataatagttttcgagt |
40458434 |
T |
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