View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11856_low_87 (Length: 230)
Name: NF11856_low_87
Description: NF11856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11856_low_87 |
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Alignment Details
Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 123 - 216
Target Start/End: Original strand, 39197305 - 39197398
Alignment:
| Q |
123 |
tgacttgagtactaatcaatggattttgctacgatagacataattcagaagacgtacaagttggttttcaaaactccatagtagataagaaagt |
216 |
Q |
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| T |
39197305 |
tgacttgagtactaatcaatggattttgctacgatagacacaattcagaagacgtacaagttggtttgcaaaactccatagtagataagaaagt |
39197398 |
T |
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Target: chr1 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 17 - 122
Target Start/End: Original strand, 42309102 - 42309207
Alignment:
| Q |
17 |
atcaataaatttgaaccattcacttaaaatattaatatatcaacggttaaaacatcaactttcctatgataggaaaaaacttcactttcccattttaaac |
116 |
Q |
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| T |
42309102 |
atcaacaaatctgaaccattcacttaaaatattaatatatcaatggttaaaacatcaacttttttatgatgggaaaaaacttcactttcccattttaaac |
42309201 |
T |
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| Q |
117 |
cccacc |
122 |
Q |
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|||||| |
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| T |
42309202 |
cccacc |
42309207 |
T |
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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 123
Target Start/End: Complemental strand, 42383769 - 42383719
Alignment:
| Q |
73 |
aactttcctatgataggaaaaaacttcactttcccattttaaaccccacct |
123 |
Q |
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| T |
42383769 |
aactttcccatgataggaaacaacttctctttcccatactaaaccccacct |
42383719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 44 - 118
Target Start/End: Complemental strand, 49454211 - 49454137
Alignment:
| Q |
44 |
aatattaatatatcaacggttaaaacatcaactttcctatgataggaaaaaacttcactttcccattttaaaccc |
118 |
Q |
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| T |
49454211 |
aatattaatatatcaatggttaaaacatcaactttttcatgatgggaaaaaacttcactttcccattttaaaccc |
49454137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 45807038 - 45807090
Alignment:
| Q |
71 |
tcaactttcctatgataggaaaaaacttcactttcccattttaaaccccacct |
123 |
Q |
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| T |
45807038 |
tcaactttcccatcataggaaacaactttgctttcccattctaaaccccacct |
45807090 |
T |
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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 109
Target Start/End: Complemental strand, 31277021 - 31276940
Alignment:
| Q |
28 |
tgaaccattcacttaaaatattaatatatcaacggttaaaacatcaactttcctatgataggaaaaaacttcactttcccat |
109 |
Q |
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| T |
31277021 |
tgaaccgttcatttaaaataataatatatcaatggttgaaacatcaactttcccatcatgggaaagaactttcctttcccat |
31276940 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 38134733 - 38134693
Alignment:
| Q |
28 |
tgaaccattcacttaaaatattaatatatcaacggttaaaa |
68 |
Q |
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| T |
38134733 |
tgaaccattcagttaaaataataatatatcaatggttaaaa |
38134693 |
T |
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