View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11856_low_89 (Length: 225)
Name: NF11856_low_89
Description: NF11856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11856_low_89 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 11745008 - 11744821
Alignment:
| Q |
19 |
aaggaaccatcaagtattctatttgcaatccattgatttgctgcttcagtgtagtgcactccatcccaactaatgtactttgaaggatcttcacaagaac |
118 |
Q |
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| T |
11745008 |
aaggaaccattaagtattctatttgcaatccattgatttgctgcttcagtgtagtgcactccatcccaactaatgtactttgaaggatcttcacaagaac |
11744909 |
T |
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| Q |
119 |
tagcaactatttctttaccattaatcgttgctttatttccacaataaacatggtatccatcttcatgatacccacaacatattccaga |
206 |
Q |
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| T |
11744908 |
tagcaactatttctttaccattaatcattgctttatttccacaataaacatggtatccatcttcatgatacccacaacatattccaga |
11744821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 22 - 206
Target Start/End: Complemental strand, 11738499 - 11738315
Alignment:
| Q |
22 |
gaaccatcaagtattctatttgcaatccattgatttgctgcttcagtgtagtgcactccatcccaactaatgtactttgaaggatcttcacaagaactag |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
11738499 |
gaaccatcaagtattctatttgcaatccattgatttgctgcttcagtgtagtgcactccatcccaactaatgtactttgaaggatcttcacaagaacttg |
11738400 |
T |
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| Q |
122 |
caactatttctttaccattaatcgttgctttatttccacaataaacatggtatccatcttcatgatacccacaacatattccaga |
206 |
Q |
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| T |
11738399 |
taacaatttctttaccattaatcgttgctttattcccacaataaacatggtatccattttcatgatacccacaacatattccaga |
11738315 |
T |
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