View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11856_low_9 (Length: 626)

Name: NF11856_low_9
Description: NF11856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11856_low_9
NF11856_low_9
[»] chr2 (10 HSPs)
chr2 (87-610)||(10366199-10366723)
chr2 (15-86)||(34520568-34520639)
chr2 (15-75)||(10359402-10359462)
chr2 (17-81)||(17537763-17537827)
chr2 (6-86)||(23719943-23720020)
chr2 (6-86)||(24107615-24107692)
chr2 (38-88)||(6978116-6978166)
chr2 (6-88)||(37311485-37311567)
chr2 (297-390)||(15976784-15976877)
chr2 (38-81)||(33405042-33405085)
[»] chr1 (11 HSPs)
chr1 (6-88)||(49260523-49260605)
chr1 (6-81)||(35186292-35186367)
chr1 (18-81)||(15355640-15355703)
chr1 (6-88)||(39856087-39856169)
chr1 (38-86)||(37779432-37779480)
chr1 (6-81)||(38044048-38044123)
chr1 (6-88)||(40532221-40532303)
chr1 (15-88)||(23343801-23343871)
chr1 (6-66)||(12790117-12790177)
chr1 (38-88)||(24269244-24269294)
chr1 (42-84)||(24362942-24362984)
[»] chr3 (15 HSPs)
chr3 (6-88)||(49274711-49274793)
chr3 (6-88)||(11377824-11377906)
chr3 (15-81)||(34470913-34470979)
chr3 (6-88)||(46413131-46413213)
chr3 (6-88)||(14632759-14632841)
chr3 (6-88)||(51012129-51012211)
chr3 (15-81)||(10052209-10052275)
chr3 (6-88)||(44928752-44928834)
chr3 (15-81)||(47759804-47759870)
chr3 (6-88)||(50458093-50458175)
chr3 (6-86)||(30193829-30193906)
chr3 (38-86)||(18441668-18441716)
chr3 (38-86)||(19486742-19486790)
chr3 (6-86)||(42322251-42322331)
chr3 (6-88)||(51016580-51016659)
[»] chr4 (14 HSPs)
chr4 (6-86)||(51026632-51026712)
chr4 (6-81)||(47873324-47873399)
chr4 (6-77)||(2774314-2774385)
chr4 (6-81)||(22437921-22437996)
chr4 (15-68)||(45940845-45940898)
chr4 (29-81)||(36775349-36775401)
chr4 (32-81)||(49790800-49790849)
chr4 (38-88)||(43888366-43888416)
chr4 (6-81)||(21170770-21170842)
chr4 (244-351)||(45057223-45057329)
chr4 (38-81)||(49816290-49816333)
chr4 (6-59)||(2567889-2567942)
chr4 (50-88)||(17054305-17054343)
chr4 (222-390)||(22358001-22358170)
[»] chr8 (4 HSPs)
chr8 (6-88)||(26487740-26487822)
chr8 (6-88)||(42167780-42167862)
chr8 (6-86)||(19241501-19241581)
chr8 (6-86)||(19314685-19314765)
[»] chr7 (6 HSPs)
chr7 (6-88)||(22292130-22292212)
chr7 (6-86)||(43350235-43350315)
chr7 (15-88)||(17184483-17184556)
chr7 (26-81)||(42736281-42736336)
chr7 (38-88)||(20876920-20876970)
chr7 (308-350)||(37127004-37127046)
[»] chr6 (2 HSPs)
chr6 (6-86)||(12398081-12398161)
chr6 (38-88)||(32133543-32133593)
[»] chr5 (6 HSPs)
chr5 (15-81)||(1972668-1972734)
chr5 (15-81)||(7484345-7484411)
chr5 (6-81)||(6792290-6792365)
chr5 (6-86)||(1696094-1696174)
chr5 (6-86)||(36349147-36349227)
chr5 (38-80)||(4722966-4723008)


Alignment Details
Target: chr2 (Bit Score: 416; Significance: 0; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 87 - 610
Target Start/End: Original strand, 10366199 - 10366723
Alignment:
Q  87 gagttaacgagtttcacactaattgttagtgagaacttcagttcaatgtctcgatagaataattcaaatgacttacttgcatgttactaaagagagataa 186  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10366199 gagttaatgagttttacactaattgttagtgagaacttcagttcaatgtctggatagaataattcaaatgacttacttgcatgttactaaagagagataa 10366298  T
Q  187 ggcggttgttcatgcactctcacaagaggtatttagattagctccgatcttaccaaaaatatatgctcaaaagttttcttttatgagaatgtgccgaatg 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10366299 ggcggttgttcatgcactctcacaagaggtatttagattagctccgatcttaccaaaaatatatgctcaaaagttttcttttatgagaatgtgctgaatg 10366398  T
Q  287 gggatgttccaatccttaactagataactttgaattagctctaagaggttggcataataatgaaatttcagtgtctcttttaccactaaatgaactacat 386  Q
    | |||||||||||||| |||||||||| || ||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||    
T  10366399 gagatgttccaatcctcaactagataatttcgaattagctctaagaggttggtataatgatgaaatttcagtgtctcctttaccactaaatgaactacat 10366498  T
Q  387 ggagaaaatcagaaaataacataannnnnnngaagcacacttaccaatggagagtaatttctgttagagtttgaatctctgcatgtaaaacgtttgacaa 486  Q
    ||||||||||||||||| ||||||       |||||||||| |||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10366499 ggagaaaatcagaaaatgacataatttttttgaagcacactcaccaacagagagtaatttccgttagagtttgaatctctgcatgtaaaacgtttgacaa 10366598  T
Q  487 accacactatcatagaaaccaaattaaaa-ttgctcgtaagagtgattacgcacaatactaccatagtctgcttgtctcggattcatcgtgcaccaccat 585  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||    
T  10366599 accacactatcatagaaaccaaattaaaatttgctcgtaagagtggttacgcacaataccaccatagtctgcttgtctcggattcatcgtgcaccactat 10366698  T
Q  586 caacatttaggaccaaagtgttatt 610  Q
    || ||||||||||||||||||||||    
T  10366699 cagcatttaggaccaaagtgttatt 10366723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 34520568 - 34520639
Alignment:
Q  15 gaaacgttgaagtgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacg 86  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  34520568 gaaacgttgaggtgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcgccgatgacatgacacg 34520639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 10359402 - 10359462
Alignment:
Q  15 gaaacgttgaagtgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgat 75  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10359402 gaaacgttgaggtgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgat 10359462  T

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Target: chr2; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 17537763 - 17537827
Alignment:
Q  17 aacgttgaagtgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatg 81  Q
    ||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  17537763 aacgttgagttgaacaagaagaaggagggcgacgacaagaagaaagaaaaatcaccgatgacatg 17537827  T

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Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 23719943 - 23720020
Alignment:
Q  6 agaagcagagaaacgttgaagtgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacg 86  Q
    |||| ||| |||||||||| |||||||| |||   ||||||||||||||||||||||||||||| ||||||||||| ||||    
T  23719943 agaatcagggaaacgttgaggtgaacaaaaag---gagggtgacgacaagaagaaagaaaaatcgccgatgacatggcacg 23720020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 24107615 - 24107692
Alignment:
Q  6 agaagcagagaaacgttgaagtgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacg 86  Q
    |||| ||| |||||||||| |||||||| |||   ||||||||||||||||||||||||||||| ||||||||||| ||||    
T  24107615 agaatcagggaaacgttgaggtgaacaaaaag---gagggtgacgacaagaagaaagaaaaatcgccgatgacatggcacg 24107692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 38 - 88
Target Start/End: Complemental strand, 6978166 - 6978116
Alignment:
Q  38 aaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 88  Q
    |||||||||||||||||||||||||||||||  ||||||||||| ||||||    
T  6978166 aaggagggtgacgacaagaagaaagaaaaattgccgatgacatggcacgga 6978116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 6 - 88
Target Start/End: Original strand, 37311485 - 37311567
Alignment:
Q  6 agaagcagagaaacgttgaagtgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 88  Q
    |||| ||| ||||||||||  ||||||| |  ||||||||||||||||||||||||||||||||   ||||||||| ||||||    
T  37311485 agaatcagggaaacgttgagttgaacaacagaaaggagggtgacgacaagaagaaagaaaaatcgttgatgacatggcacgga 37311567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 297 - 390
Target Start/End: Complemental strand, 15976877 - 15976784
Alignment:
Q  297 aatccttaactagataactttgaattagctctaagaggttggcataataatgaaatttcagtgtctcttttaccactaaatgaactacatggag 390  Q
    |||||||||||| ||||||| |||||||||| | | |||||||||||| || |||  ||  |||||| ||| || |||| ||||||||||||||    
T  15976877 aatccttaactaaataacttcgaattagctccagggggttggcataatgattaaacctcgatgtctcctttgccgctaactgaactacatggag 15976784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 81
Target Start/End: Complemental strand, 33405085 - 33405042
Alignment:
Q  38 aaggagggtgacgacaagaagaaagaaaaatcaccgatgacatg 81  Q
    ||||||||||| ||||||||||||||||| ||||| ||||||||    
T  33405085 aaggagggtgatgacaagaagaaagaaaagtcacctatgacatg 33405042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 6 - 88
Target Start/End: Original strand, 49260523 - 49260605
Alignment:
Q  6 agaagcagagaaacgttgaagtgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 88  Q
    |||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  49260523 agaatcagggaaacgttgaggtgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatggcacgga 49260605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 6 - 81
Target Start/End: Complemental strand, 35186367 - 35186292
Alignment:
Q  6 agaagcagagaaacgttgaagtgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatg 81  Q
    |||| ||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35186367 agaatcagggaaacgttgagttgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatg 35186292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 15355640 - 15355703
Alignment:
Q  18 acgttgaagtgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatg 81  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15355640 acgttgagttgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatg 15355703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 6 - 88
Target Start/End: Original strand, 39856087 - 39856169
Alignment:
Q  6 agaagcagagaaacgttgaagtgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 88  Q
    |||| ||| ||||||||||  |||||||||||||||||||||| |||||||||||||||||||| | ||||||||| ||||||    
T  39856087 agaatcagggaaacgttgagttgaacaagaagaaggagggtgatgacaagaagaaagaaaaatcgctgatgacatggcacgga 39856169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 37779480 - 37779432
Alignment:
Q  38 aaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacg 86  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  37779480 aaggagggtgacgacaagaagaaagaaaaatcgccgatgacatgacacg 37779432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 6 - 81
Target Start/End: Original strand, 38044048 - 38044123
Alignment:
Q  6 agaagcagagaaacgttgaagtgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatg 81  Q
    |||| ||| ||||||||||  |||| |||||||| |||||||||| ||||||||||||||||||  ||||||||||    
T  38044048 agaatcagggaaacgttgagttgaataagaagaatgagggtgacggcaagaagaaagaaaaatcgtcgatgacatg 38044123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 6 - 88
Target Start/End: Original strand, 40532221 - 40532303
Alignment:
Q  6 agaagcagagaaacgttgaagtgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 88  Q
    |||| ||| ||||||||||  ||||||| |  ||||| |||||||| ||||||||||||||||| ||||||||||| ||||||    
T  40532221 agaatcagggaaacgttgagttgaacaacagaaaggatggtgacgataagaagaaagaaaaatcgccgatgacatggcacgga 40532303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 23343871 - 23343801
Alignment:
Q  15 gaaacgttgaagtgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 88  Q
    |||||||||| |||||||| |||   |||||||||||||||||||| ||||||||  |||||||||| ||||||    
T  23343871 gaaacgttgaggtgaacaaaaag---gagggtgacgacaagaagaatgaaaaatcgtcgatgacatggcacgga 23343801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 12790117 - 12790177
Alignment:
Q  6 agaagcagagaaacgttgaagtgaacaagaagaaggagggtgacgacaagaagaaagaaaa 66  Q
    |||| ||| ||||||||||  ||||||| || ||||||||| |||||||||||||||||||    
T  12790117 agaatcagggaaacgttgagttgaacaacaaaaaggagggtaacgacaagaagaaagaaaa 12790177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 24269244 - 24269294
Alignment:
Q  38 aaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 88  Q
    |||||||||| ||||||||||||||||||| | | ||||||||| ||||||    
T  24269244 aaggagggtggcgacaagaagaaagaaaaaacgctgatgacatggcacgga 24269294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 42 - 84
Target Start/End: Original strand, 24362942 - 24362984
Alignment:
Q  42 agggtgacgacaagaagaaagaaaaatcaccgatgacatgaca 84  Q
    ||||||| |||||||||||||||||||| || |||||||||||    
T  24362942 agggtgatgacaagaagaaagaaaaatcgcctatgacatgaca 24362984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 5e-27; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 6 - 88
Target Start/End: Complemental strand, 49274793 - 49274711
Alignment:
Q  6 agaagcagagaaacgttgaagtgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 88  Q
    |||| ||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  49274793 agaatcagagaaacattgagttgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatggcacgga 49274711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 6 - 88
Target Start/End: Original strand, 11377824 - 11377906
Alignment:
Q  6 agaagcagagaaacgttgaagtgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 88  Q
    |||| ||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  11377824 agaatcagggaaacgttgagttgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcgccgatgacatggcacgga 11377906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 34470913 - 34470979
Alignment:
Q  15 gaaacgttgaagtgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatg 81  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34470913 gaaacgttgagttgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatg 34470979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 6 - 88
Target Start/End: Original strand, 46413131 - 46413213
Alignment:
Q  6 agaagcagagaaacgttgaagtgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 88  Q
    |||| ||| ||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  46413131 agaatcagggaaacattgagttgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcactgatgacatgacacgga 46413213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 6 - 88
Target Start/End: Complemental strand, 14632841 - 14632759
Alignment:
Q  6 agaagcagagaaacgttgaagtgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 88  Q
    |||| ||| ||||||||||  |||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||    
T  14632841 agaatcagggaaacgttgagttgaacaagaagaaggagggtaatgacaagaagaaataaaaatcaccgatgacatgacacgga 14632759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 6 - 88
Target Start/End: Original strand, 51012129 - 51012211
Alignment:
Q  6 agaagcagagaaacgttgaagtgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 88  Q
    |||| ||| |||| |||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  51012129 agaatcagggaaatgttgagttgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcgccgatgacatggcacgga 51012211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 10052209 - 10052275
Alignment:
Q  15 gaaacgttgaagtgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatg 81  Q
    ||||||||||  |||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  10052209 gaaacgttgagttgaacaagaagaagaagggtgacgacaagaagaaagaaaaatcactgatgacatg 10052275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 6 - 88
Target Start/End: Complemental strand, 44928834 - 44928752
Alignment:
Q  6 agaagcagagaaacgttgaagtgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 88  Q
    |||| ||| ||||||||||  ||||||||||||| |||||||||||||||||||||||||||||  |||||||||| ||||||    
T  44928834 agaatcagggaaacgttgagttgaacaagaagaatgagggtgacgacaagaagaaagaaaaatcgtcgatgacatggcacgga 44928752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 47759804 - 47759870
Alignment:
Q  15 gaaacgttgaagtgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatg 81  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  47759804 gaaacgttgagttgaacaagaagaaggagggtgacgacaagaagaaagaaaaaacgccgatgacatg 47759870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 6 - 88
Target Start/End: Original strand, 50458093 - 50458175
Alignment:
Q  6 agaagcagagaaacgttgaagtgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 88  Q
    |||| ||| |||||||||| ||| |||||||||| || |||||||||||||||||||||||||| ||||||||||| ||||||    
T  50458093 agaatcagggaaacgttgaggtggacaagaagaatgacggtgacgacaagaagaaagaaaaatcgccgatgacatggcacgga 50458175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 6 - 86
Target Start/End: Complemental strand, 30193906 - 30193829
Alignment:
Q  6 agaagcagagaaacgttgaagtgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacg 86  Q
    |||| ||| |||||||||| |||||||| |||   ||||||||||||||||||||||||||||| |||||||||| |||||    
T  30193906 agaatcagggaaacgttgaggtgaacaaaaag---gagggtgacgacaagaagaaagaaaaatcgccgatgacattacacg 30193829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 18441716 - 18441668
Alignment:
Q  38 aaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacg 86  Q
    ||||||||||| |||||||||||||||||||| || |||||||||||||    
T  18441716 aaggagggtgatgacaagaagaaagaaaaatcgcctatgacatgacacg 18441668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 19486790 - 19486742
Alignment:
Q  38 aaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacg 86  Q
    ||||||||||| |||||||||||||||||||| || |||||||||||||    
T  19486790 aaggagggtgatgacaagaagaaagaaaaatcgcctatgacatgacacg 19486742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 42322251 - 42322331
Alignment:
Q  6 agaagcagagaaacgttgaagtgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacg 86  Q
    |||| ||| ||||||||||  ||||||| |  |||||| ||| ||||||||||||||||||||| ||||||||||| ||||    
T  42322251 agaatcagggaaacgttgagttgaacaacagaaaggagtgtggcgacaagaagaaagaaaaatcgccgatgacatggcacg 42322331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 6 - 88
Target Start/End: Complemental strand, 51016659 - 51016580
Alignment:
Q  6 agaagcagagaaacgttgaagtgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 88  Q
    |||| ||| |||||||||| |||||||| |||   ||||||||| |||||||||||||||||||  |||||||| | ||||||    
T  51016659 agaatcagggaaacgttgaggtgaacaaaaag---gagggtgacaacaagaagaaagaaaaatcgtcgatgacacggcacgga 51016580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 7e-26; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 51026632 - 51026712
Alignment:
Q  6 agaagcagagaaacgttgaagtgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacg 86  Q
    |||| ||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  51026632 agaatcagggaaacgttgaggtgaacaagaaaaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatggcacg 51026712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 6 - 81
Target Start/End: Complemental strand, 47873399 - 47873324
Alignment:
Q  6 agaagcagagaaacgttgaagtgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatg 81  Q
    |||| ||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47873399 agaatcagggaaacgttgagttgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatg 47873324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 6 - 77
Target Start/End: Complemental strand, 2774385 - 2774314
Alignment:
Q  6 agaagcagagaaacgttgaagtgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatga 77  Q
    |||| ||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2774385 agaatcagggaaacgttgagttgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcgccgatga 2774314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 6 - 81
Target Start/End: Complemental strand, 22437996 - 22437921
Alignment:
Q  6 agaagcagagaaacgttgaagtgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatg 81  Q
    |||| ||| ||||||||||  |||||||||||||||||||||||| ||||||||||||||||||  ||||||||||    
T  22437996 agaatcagggaaacgttgagttgaacaagaagaaggagggtgacggcaagaagaaagaaaaatcgtcgatgacatg 22437921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 45940898 - 45940845
Alignment:
Q  15 gaaacgttgaagtgaacaagaagaaggagggtgacgacaagaagaaagaaaaat 68  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  45940898 gaaacgttgagttgaacaagaagaaggagggtgacgacaagaagaaagaaaaat 45940845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 36775349 - 36775401
Alignment:
Q  29 aacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatg 81  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  36775349 aacaagaagaaggagggtgacaacaagaagaaagaaaaatcactgatgacatg 36775401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 81
Target Start/End: Original strand, 49790800 - 49790849
Alignment:
Q  32 aagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatg 81  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  49790800 aagaagaaggagggtgacgacaagaagaaagaaaaatcgtcgatgacatg 49790849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 43888366 - 43888416
Alignment:
Q  38 aaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 88  Q
    ||||||||||||||||||||||||||||||||  |||||||||| ||||||    
T  43888366 aaggagggtgacgacaagaagaaagaaaaatcgtcgatgacatggcacgga 43888416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 6 - 81
Target Start/End: Complemental strand, 21170842 - 21170770
Alignment:
Q  6 agaagcagagaaacgttgaagtgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatg 81  Q
    |||| ||| |||||||||| |||||||| |||||||   |||| |||||||||||||||||||| |||||||||||    
T  21170842 agaatcagggaaacgttgaggtgaacaaaaagaagg---gtgatgacaagaagaaagaaaaatcgccgatgacatg 21170770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 244 - 351
Target Start/End: Original strand, 45057223 - 45057329
Alignment:
Q  244 aatatatgctcaaaagttttcttttatgagaatgtgccgaatggggatgttccaatccttaactagataactttgaattagctctaagaggttggcataa 343  Q
    ||||||||| |||  |||| ||| ||||||||||||  || ||| |||||  ||||||||||| |||||||||| ||||||||  | |||||||||||||    
T  45057223 aatatatgcacaacggtttccttctatgagaatgtggtga-tggagatgtctcaatccttaacaagataactttaaattagctgaaggaggttggcataa 45057321  T
Q  344 taatgaaa 351  Q
    | ||||||    
T  45057322 tgatgaaa 45057329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 38 - 81
Target Start/End: Original strand, 49816290 - 49816333
Alignment:
Q  38 aaggagggtgacgacaagaagaaagaaaaatcaccgatgacatg 81  Q
    ||||||||||| |||||||||||||||||||| |||||||||||    
T  49816290 aaggagggtgatgacaagaagaaagaaaaatcgccgatgacatg 49816333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 2567889 - 2567942
Alignment:
Q  6 agaagcagagaaacgttgaagtgaacaagaagaaggagggtgacgacaagaaga 59  Q
    |||| ||| |||| |||||  |||||||||||||||||||||||||||||||||    
T  2567889 agaatcagggaaatgttgagttgaacaagaagaaggagggtgacgacaagaaga 2567942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 50 - 88
Target Start/End: Original strand, 17054305 - 17054343
Alignment:
Q  50 gacaagaagaaagaaaaatcaccgatgacatgacacgga 88  Q
    |||||||||||||||||||| ||||||||||| ||||||    
T  17054305 gacaagaagaaagaaaaatcgccgatgacatggcacgga 17054343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 390
Target Start/End: Original strand, 22358001 - 22358170
Alignment:
Q  222 gattagctccgatcttaccaaaaatatatgctcaaaagttttcttttatgagaatgtgccgaatggggatgttccaatccttaa-ctagataactttgaa 320  Q
    |||||||| | |||||  ||| ||||||| | ||| ||||| ||| | |||||||||   | |||| |||||  |||||||||| | ||||||||| |||    
T  22358001 gattagcttctatcttgacaagaatatatacgcaagagtttccttctctgagaatgtaatggatggagatgtcacaatccttaaacaagataacttggaa 22358100  T
Q  321 ttagctctaagaggttggcataataatgaaatttcagtgtctcttttaccactaaatgaactacatggag 390  Q
    ||| ||| |  ||||||||||||| ||||||| ||| | |||| ||  ||||||| |||| |||||||||    
T  22358101 ttaactccagaaggttggcataatgatgaaatctcaatttctccttcgccactaactgaattacatggag 22358170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 1e-24; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 6 - 88
Target Start/End: Complemental strand, 26487822 - 26487740
Alignment:
Q  6 agaagcagagaaacgttgaagtgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 88  Q
    |||| ||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  26487822 agaatcagggaaacgttgagttgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcgccgatgacatggcacgga 26487740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 6 - 88
Target Start/End: Original strand, 42167780 - 42167862
Alignment:
Q  6 agaagcagagaaacgttgaagtgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 88  Q
    |||| ||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  42167780 agaatcagggaaacgttgagttgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcgccgatgacatggcacgga 42167862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 19241501 - 19241581
Alignment:
Q  6 agaagcagagaaacgttgaagtgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacg 86  Q
    |||| ||||||||||||||  ||||||| |  ||||||||||||||||||||||||||||||||  |||||||||| ||||    
T  19241501 agaatcagagaaacgttgagttgaacaacagaaaggagggtgacgacaagaagaaagaaaaatcgtcgatgacatggcacg 19241581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 19314685 - 19314765
Alignment:
Q  6 agaagcagagaaacgttgaagtgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacg 86  Q
    |||| ||||||||||||||  ||||||| |  ||||||||||||||||||||||||||||||||  |||||||||| ||||    
T  19314685 agaatcagagaaacgttgagttgaacaacagaaaggagggtgacgacaagaagaaagaaaaatcgtcgatgacatggcacg 19314765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 3e-22; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 6 - 88
Target Start/End: Complemental strand, 22292212 - 22292130
Alignment:
Q  6 agaagcagagaaacgttgaagtgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 88  Q
    |||| ||| |||||||| |  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  22292212 agaatcagggaaacgtttagttgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcgccgatgacatggcacgga 22292130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 43350235 - 43350315
Alignment:
Q  6 agaagcagagaaacgttgaagtgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacg 86  Q
    |||| ||| ||||||||||  ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||    
T  43350235 agaatcagggaaacgttgagttgaacaagaagaaggagggtgacgacaagaagaaagaaatatcgccgatgacatggcacg 43350315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 17184556 - 17184483
Alignment:
Q  15 gaaacgttgaagtgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 88  Q
    ||||||||||  ||||||||||||||||||||||  ||||||||||||||||||| ||||||||||| ||||||    
T  17184556 gaaacgttgagttgaacaagaagaaggagggtgaaaacaagaagaaagaaaaatcgccgatgacatggcacgga 17184483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 42736336 - 42736281
Alignment:
Q  26 gtgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatg 81  Q
    |||||||||||||||||||||||| |||||||||||||||||||  ||||||||||    
T  42736336 gtgaacaagaagaaggagggtgaccacaagaagaaagaaaaatcgtcgatgacatg 42736281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 20876920 - 20876970
Alignment:
Q  38 aaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 88  Q
    |||||||| ||||||||||||||||||||||| | ||||||||| ||||||    
T  20876920 aaggagggcgacgacaagaagaaagaaaaatcgctgatgacatggcacgga 20876970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 308 - 350
Target Start/End: Complemental strand, 37127046 - 37127004
Alignment:
Q  308 agataactttgaattagctctaagaggttggcataataatgaa 350  Q
    |||||||||||||||| |||||||||||| ||||||| |||||    
T  37127046 agataactttgaattatctctaagaggttagcataatgatgaa 37127004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 6 - 86
Target Start/End: Complemental strand, 12398161 - 12398081
Alignment:
Q  6 agaagcagagaaacgttgaagtgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacg 86  Q
    |||| ||| ||||||||||  |||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  12398161 agaatcagggaaacgttgagttgaataagaagaaggagggtgacgacaagaagaaagaaaaatcacggatgacatggcacg 12398081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 32133543 - 32133593
Alignment:
Q  38 aaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 88  Q
    ||||||||||| | |||||||||||||||||| || |||||||| ||||||    
T  32133543 aaggagggtgatgccaagaagaaagaaaaatcgcctatgacatggcacgga 32133593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 7e-20; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 1972734 - 1972668
Alignment:
Q  15 gaaacgttgaagtgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatg 81  Q
    |||||||||| ||||||||||||||||||||||||| || ||||||||||||||||| |||||||||    
T  1972734 gaaacgttgaggtgaacaagaagaaggagggtgacggcaggaagaaagaaaaatcactgatgacatg 1972668  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 7484345 - 7484411
Alignment:
Q  15 gaaacgttgaagtgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatg 81  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  7484345 gaaacgttgagttgaacaagaagaaggagggtgacgacaagaagaaagaaaaattgccgatgacatg 7484411  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 6 - 81
Target Start/End: Original strand, 6792290 - 6792365
Alignment:
Q  6 agaagcagagaaacgttgaagtgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatg 81  Q
    |||| ||| ||||||| ||  ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  6792290 agaatcagggaaacgtcgagttgaacaagaagaaggagggtgacaacaaaaagaaagaaaaatcaccgatgacatg 6792365  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 6 - 86
Target Start/End: Complemental strand, 1696174 - 1696094
Alignment:
Q  6 agaagcagagaaacgttgaagtgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacg 86  Q
    |||| ||| ||||||||||  ||||||| |  ||||||||||||||||||||||||||||||||  |||||||||| ||||    
T  1696174 agaatcagggaaacgttgagttgaacaacagaaaggagggtgacgacaagaagaaagaaaaatcgtcgatgacatggcacg 1696094  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 36349147 - 36349227
Alignment:
Q  6 agaagcagagaaacgttgaagtgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacg 86  Q
    |||| ||| ||||||||||  ||||||| |  ||||||||| |||||| ||||||||||||||| ||||||||||| ||||    
T  36349147 agaatcagggaaacgttgagttgaacaacagaaaggagggtcacgacaggaagaaagaaaaatcgccgatgacatggcacg 36349227  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 80
Target Start/End: Original strand, 4722966 - 4723008
Alignment:
Q  38 aaggagggtgacgacaagaagaaagaaaaatcaccgatgacat 80  Q
    ||||||||||||||||||||||||||||| || ||||||||||    
T  4722966 aaggagggtgacgacaagaagaaagaaaattcgccgatgacat 4723008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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