View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11856_low_93 (Length: 208)

Name: NF11856_low_93
Description: NF11856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11856_low_93
NF11856_low_93
[»] chr8 (8 HSPs)
chr8 (23-192)||(39429889-39430060)
chr8 (23-76)||(11929478-11929531)
chr8 (23-76)||(15044129-15044182)
chr8 (23-66)||(11941720-11941763)
chr8 (23-74)||(12721751-12721802)
chr8 (23-64)||(5182500-5182542)
chr8 (23-64)||(41941118-41941160)
chr8 (24-64)||(4430068-4430108)
[»] chr2 (13 HSPs)
chr2 (18-76)||(25915064-25915122)
chr2 (23-76)||(42057178-42057231)
chr2 (29-68)||(10643755-10643794)
chr2 (23-76)||(18072572-18072626)
chr2 (29-74)||(22881435-22881481)
chr2 (39-76)||(27359874-27359911)
chr2 (20-60)||(28146240-28146281)
chr2 (20-60)||(38702096-38702137)
chr2 (16-64)||(11653124-11653172)
chr2 (23-64)||(19039996-19040039)
chr2 (24-67)||(19064019-19064063)
chr2 (23-76)||(21839775-21839830)
chr2 (23-76)||(41633349-41633404)
[»] chr4 (14 HSPs)
chr4 (28-120)||(5190609-5190702)
chr4 (23-76)||(11064326-11064379)
chr4 (18-76)||(37831103-37831161)
chr4 (24-116)||(20702697-20702790)
chr4 (23-76)||(35034654-35034710)
chr4 (23-64)||(48737023-48737065)
chr4 (23-64)||(48737317-48737359)
chr4 (23-76)||(50179479-50179535)
chr4 (23-68)||(7059566-7059611)
chr4 (23-64)||(7067611-7067652)
chr4 (39-76)||(19437106-19437143)
chr4 (23-64)||(12214423-12214466)
chr4 (20-64)||(19038403-19038447)
chr4 (23-64)||(48736727-48736770)
[»] chr7 (10 HSPs)
chr7 (20-68)||(41383791-41383839)
chr7 (23-64)||(9334875-9334916)
chr7 (23-76)||(47901905-47901958)
chr7 (23-76)||(21766046-21766100)
chr7 (23-64)||(48109801-48109843)
chr7 (20-65)||(20055805-20055850)
chr7 (23-64)||(32297764-32297805)
chr7 (23-76)||(19371898-19371953)
chr7 (23-76)||(22479773-22479828)
chr7 (23-68)||(31010028-31010075)
[»] chr5 (10 HSPs)
chr5 (29-76)||(27832481-27832528)
chr5 (20-64)||(8231097-8231142)
chr5 (23-76)||(16313425-16313478)
chr5 (23-60)||(25781792-25781829)
chr5 (23-64)||(41863033-41863074)
chr5 (24-64)||(36267344-36267384)
chr5 (23-76)||(15232040-15232091)
chr5 (24-64)||(36092205-36092246)
chr5 (23-76)||(248765-248820)
chr5 (29-76)||(28096094-28096142)
[»] scaffold0137 (1 HSPs)
scaffold0137 (24-75)||(6776-6829)
[»] chr1 (11 HSPs)
chr1 (23-64)||(773918-773960)
chr1 (23-76)||(4968861-4968914)
chr1 (23-76)||(40368180-40368233)
chr1 (23-132)||(37705622-37705733)
chr1 (23-64)||(23773217-23773261)
chr1 (23-76)||(52043551-52043605)
chr1 (20-120)||(1581001-1581102)
chr1 (39-76)||(7548653-7548690)
chr1 (23-68)||(9479709-9479754)
chr1 (22-63)||(13262676-13262717)
chr1 (23-64)||(35547030-35547071)
[»] chr3 (9 HSPs)
chr3 (23-76)||(1149200-1149253)
chr3 (23-64)||(5492856-5492897)
chr3 (23-75)||(27947926-27947979)
chr3 (23-76)||(45879969-45880024)
chr3 (20-68)||(2454336-2454386)
chr3 (23-76)||(30805738-30805792)
chr3 (23-68)||(21495732-21495777)
chr3 (23-68)||(27398352-27398397)
chr3 (20-76)||(18386763-18386818)
[»] scaffold0707 (1 HSPs)
scaffold0707 (23-75)||(217-269)
[»] chr6 (3 HSPs)
chr6 (23-75)||(33573638-33573690)
chr6 (23-66)||(4118989-4119032)
chr6 (23-75)||(31862016-31862070)
[»] scaffold0143 (1 HSPs)
scaffold0143 (23-67)||(5601-5645)
[»] scaffold0037 (2 HSPs)
scaffold0037 (23-64)||(56887-56930)
scaffold0037 (23-64)||(64012-64055)


Alignment Details
Target: chr8 (Bit Score: 112; Significance: 8e-57; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 23 - 192
Target Start/End: Original strand, 39429889 - 39430060
Alignment:
Q  23 aaaattaaaatttcataaaaaacaccgtttataattttcaaatgttggcgcaatnnnnnnnncggaaagacggaca-gtgagtacccgtcttttcgctaa 121  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||        |||||||||||||| ||||||| |||||||||||||      
T  39429889 aaaattaaaatttcataaaaaacaccgtttataattttcaaacgttggcgcaataaaaaaaacggaaagacggacacgtgagtatccgtcttttcgctgg 39429988  T
Q  122 ttattataatatt-aagaatctattcctcttgttcctgcttcctaaataagctttgatctgccatcgtatgt 192  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  39429989 ttattataatatttaagaatctattcctcttgttcctccttcctaaataagctttgatctgccatcgtatgt 39430060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 11929531 - 11929478
Alignment:
Q  23 aaaattaaaatttcataaaaaacaccgtttataattttcaaatgttggcgcaat 76  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||| |||||||    
T  11929531 aaaatcaaaatttcataaaaaacatcgtttataattttcaaatgttagcgcaat 11929478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 15044182 - 15044129
Alignment:
Q  23 aaaattaaaatttcataaaaaacaccgtttataattttcaaatgttggcgcaat 76  Q
    ||||| ||||||||||||||||||||||| |||||||||||| ||| |||||||    
T  15044182 aaaatcaaaatttcataaaaaacaccgttcataattttcaaacgttagcgcaat 15044129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 66
Target Start/End: Original strand, 11941720 - 11941763
Alignment:
Q  23 aaaattaaaatttcataaaaaacaccgtttataattttcaaatg 66  Q
    ||||| |||||||||  |||||||||||||||||||||||||||    
T  11941720 aaaatcaaaatttcaataaaaacaccgtttataattttcaaatg 11941763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 12721802 - 12721751
Alignment:
Q  23 aaaattaaaatttcataaaaaacaccgtttataattttcaaatgttggcgca 74  Q
    ||||| ||||||||||||||||||| ||| |||||||||||| ||| |||||    
T  12721802 aaaatcaaaatttcataaaaaacacggttaataattttcaaacgttagcgca 12721751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 5182542 - 5182500
Alignment:
Q  23 aaaattaaaatttcataaaaaa-caccgtttataattttcaaa 64  Q
    |||||||||||||||||||||| ||||||| ||||||||||||    
T  5182542 aaaattaaaatttcataaaaaaacaccgttcataattttcaaa 5182500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 41941160 - 41941118
Alignment:
Q  23 aaaattaaaatttcat-aaaaaacaccgtttataattttcaaa 64  Q
    |||||||||||||||| ||||||||||||| ||||||||||||    
T  41941160 aaaattaaaatttcattaaaaaacaccgttcataattttcaaa 41941118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 4430108 - 4430068
Alignment:
Q  24 aaattaaaatttcataaaaaacaccgtttataattttcaaa 64  Q
    |||| ||||||| ||||||||||||||| ||||||||||||    
T  4430108 aaatcaaaattttataaaaaacaccgttcataattttcaaa 4430068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 25915122 - 25915064
Alignment:
Q  18 tgattaaaattaaaatttcataaaaaacaccgtttataattttcaaatgttggcgcaat 76  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||| ||| |||||||    
T  25915122 tgatcaaaatcaaaatttcataaaaaacaccgtttataattttcaaacgttagcgcaat 25915064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 42057231 - 42057178
Alignment:
Q  23 aaaattaaaatttcataaaaaacaccgtttataattttcaaatgttggcgcaat 76  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||| |||||||    
T  42057231 aaaattaaaatttcataaaaaacaccgttcataattttcaaacgttagcgcaat 42057178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 68
Target Start/End: Original strand, 10643755 - 10643794
Alignment:
Q  29 aaaatttcataaaaaacaccgtttataattttcaaatgtt 68  Q
    ||||||| ||||||||||||||||||||||| ||||||||    
T  10643755 aaaattttataaaaaacaccgtttataatttacaaatgtt 10643794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 18072572 - 18072626
Alignment:
Q  23 aaaattaaaatttcat-aaaaaacaccgtttataattttcaaatgttggcgcaat 76  Q
    |||||||||||||||| |||||||| |||| |||||||||||| ||| |||||||    
T  18072572 aaaattaaaatttcataaaaaaacagcgttaataattttcaaacgttagcgcaat 18072626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 22881481 - 22881435
Alignment:
Q  29 aaaatttcataaaaaa-caccgtttataattttcaaatgttggcgca 74  Q
    |||||||||||||||| ||||||| |||||||||||||||| |||||    
T  22881481 aaaatttcataaaaaaacaccgttcataattttcaaatgttagcgca 22881435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 76
Target Start/End: Complemental strand, 27359911 - 27359874
Alignment:
Q  39 aaaaaacaccgtttataattttcaaatgttggcgcaat 76  Q
    ||||||||||||| |||||||||||||||| |||||||    
T  27359911 aaaaaacaccgttaataattttcaaatgttagcgcaat 27359874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 28146240 - 28146281
Alignment:
Q  20 attaaaattaaaatttcat-aaaaaacaccgtttataatttt 60  Q
    ||||||||||||||||||| ||||||||||||| ||||||||    
T  28146240 attaaaattaaaatttcataaaaaaacaccgttaataatttt 28146281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 38702137 - 38702096
Alignment:
Q  20 attaaaattaaaatttcataa-aaaacaccgtttataatttt 60  Q
    ||||||||||||||||||||| |||| |||||||||||||||    
T  38702137 attaaaattaaaatttcataaaaaaataccgtttataatttt 38702096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 11653124 - 11653172
Alignment:
Q  16 tctgattaaaattaaaatttcataaaaaacaccgtttataattttcaaa 64  Q
    |||||| ||||| |||| ||||||||||||||| || ||||||||||||    
T  11653124 tctgatcaaaatcaaaagttcataaaaaacacctttcataattttcaaa 11653172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 19039996 - 19040039
Alignment:
Q  23 aaaattaaaatttcataaaa--aacaccgtttataattttcaaa 64  Q
    ||||| ||||||||||||||  ||||||||||||||||||||||    
T  19039996 aaaatcaaaatttcataaaaaaaacaccgtttataattttcaaa 19040039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 19064019 - 19064063
Alignment:
Q  24 aaattaaaatttcat-aaaaaacaccgtttataattttcaaatgt 67  Q
    ||||||||||||||| ||||||||| ||| |||||||||||||||    
T  19064019 aaattaaaatttcataaaaaaacacagttcataattttcaaatgt 19064063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 21839775 - 21839830
Alignment:
Q  23 aaaattaaaatttcataaa--aaacaccgtttataattttcaaatgttggcgcaat 76  Q
    |||||||||||||||||||  |||||| ||| |||||||||||| ||| |||||||    
T  21839775 aaaattaaaatttcataaaataaacactgttcataattttcaaacgttagcgcaat 21839830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 41633349 - 41633404
Alignment:
Q  23 aaaattaaaatttcataaaa--aacaccgtttataattttcaaatgttggcgcaat 76  Q
    |||||| |||||||||||||  ||||||||| |||||||||||| ||| |||||||    
T  41633349 aaaatttaaatttcataaaaaaaacaccgttcataattttcaaacgttagcgcaat 41633404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 28 - 120
Target Start/End: Original strand, 5190609 - 5190702
Alignment:
Q  28 taaaatttcataaaaaacaccgtttataattttcaaatgttggcgcaatnnnnnnnncggaaagacggaca-gtgagtacccgtcttttcgcta 120  Q
    ||||||||||||||||||| |||| |||||||||||||||| |||||||        ||||||||| |||| |||||| |||||||||||||||    
T  5190609 taaaatttcataaaaaacatcgttcataattttcaaatgttagcgcaataaaaagagcggaaagacagacaggtgagtgcccgtcttttcgcta 5190702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 11064379 - 11064326
Alignment:
Q  23 aaaattaaaatttcataaaaaacaccgtttataattttcaaatgttggcgcaat 76  Q
    |||||||||||||||||||||||||| || |||||||||||||||| |||||||    
T  11064379 aaaattaaaatttcataaaaaacaccattcataattttcaaatgttagcgcaat 11064326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 37831103 - 37831161
Alignment:
Q  18 tgattaaaattaaaatttcataaaaaacaccgtttataattttcaaatgttggcgcaat 76  Q
    |||| ||||||||||||||||| |||||| ||||||||||||| ||| ||| |||||||    
T  37831103 tgatcaaaattaaaatttcatataaaacatcgtttataattttgaaacgttagcgcaat 37831161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 20702697 - 20702790
Alignment:
Q  24 aaattaaaatttcataaaaaacaccgtttataattttcaaatgttggcgcaatnnnnnnnncggaaagacggaca-gtgagtacccgtcttttc 116  Q
    |||| |||||||||||||||| |||||| |||||||||||| ||| |||||||        ||||||||||| || |||||| |||||||||||    
T  20702697 aaatcaaaatttcataaaaaaaaccgttaataattttcaaacgttagcgcaataaaaagagcggaaagacgggcacgtgagtgcccgtcttttc 20702790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 35034710 - 35034654
Alignment:
Q  23 aaaattaaaatttcataaaaaa---caccgtttataattttcaaatgttggcgcaat 76  Q
    ||||||||||||||||||||||   ||||||| |||||||||||| ||| |||||||    
T  35034710 aaaattaaaatttcataaaaaaaaacaccgttcataattttcaaacgttcgcgcaat 35034654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 48737065 - 48737023
Alignment:
Q  23 aaaattaaaatttcataaaaaa-caccgtttataattttcaaa 64  Q
    |||||||||||||||||||||| || |||||||||||||||||    
T  48737065 aaaattaaaatttcataaaaaaacatcgtttataattttcaaa 48737023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 48737359 - 48737317
Alignment:
Q  23 aaaattaaaatttcataaaaaa-caccgtttataattttcaaa 64  Q
    |||||||||||||||||||||| || |||||||||||||||||    
T  48737359 aaaattaaaatttcataaaaaaacatcgtttataattttcaaa 48737317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 50179479 - 50179535
Alignment:
Q  23 aaaattaaaatttcataaaa---aacaccgtttataattttcaaatgttggcgcaat 76  Q
    ||||||||||||||||||||   ||||||||| |||||||||||| ||||| |||||    
T  50179479 aaaattaaaatttcataaaaaaaaacaccgttcataattttcaaacgttggtgcaat 50179535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 7059566 - 7059611
Alignment:
Q  23 aaaattaaaatttcataaaaaacaccgtttataattttcaaatgtt 68  Q
    |||||||||||||||||||||| | |||| |||||||| |||||||    
T  7059566 aaaattaaaatttcataaaaaaaatcgttcataatttttaaatgtt 7059611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 7067652 - 7067611
Alignment:
Q  23 aaaattaaaatttcataaaaaacaccgtttataattttcaaa 64  Q
    ||||||||| |||||||||||| | |||||||||||||||||    
T  7067652 aaaattaaattttcataaaaaatatcgtttataattttcaaa 7067611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 76
Target Start/End: Complemental strand, 19437143 - 19437106
Alignment:
Q  39 aaaaaacaccgtttataattttcaaatgttggcgcaat 76  Q
    |||||||||||||||||||||||||| ||| |||||||    
T  19437143 aaaaaacaccgtttataattttcaaacgttagcgcaat 19437106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 12214466 - 12214423
Alignment:
Q  23 aaaattaaaatttcataaaaaa--caccgtttataattttcaaa 64  Q
    ||||| ||||||||||||||||  ||||||||||||||||||||    
T  12214466 aaaatcaaaatttcataaaaaatacaccgtttataattttcaaa 12214423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 19038403 - 19038447
Alignment:
Q  20 attaaaattaaaatttcataaaaaacaccgtttataattttcaaa 64  Q
    |||||||||||||||| |||||||| || ||| ||||||||||||    
T  19038403 attaaaattaaaattttataaaaaatactgttcataattttcaaa 19038447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 48736770 - 48736727
Alignment:
Q  23 aaaattaaaatttcataaaaaacac--cgtttataattttcaaa 64  Q
    |||||||||||||||||||||| ||  |||||||||||||||||    
T  48736770 aaaattaaaatttcataaaaaaaacatcgtttataattttcaaa 48736727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 41383839 - 41383791
Alignment:
Q  20 attaaaattaaaatttcataaaaaacaccgtttataattttcaaatgtt 68  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||||    
T  41383839 attaaaataaaaatttcataaaaaacaccgtttataatttttaaatgtt 41383791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 9334875 - 9334916
Alignment:
Q  23 aaaattaaaatttcataaaaaacaccgtttataattttcaaa 64  Q
    ||||| ||||||||||||||||||||||| ||||||||||||    
T  9334875 aaaatcaaaatttcataaaaaacaccgttcataattttcaaa 9334916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 47901905 - 47901958
Alignment:
Q  23 aaaattaaaatttcataaaaaacaccgtttataattttcaaatgttggcgcaat 76  Q
    ||||| ||||||||||||||| ||||||| |||||||| ||||||| |||||||    
T  47901905 aaaatcaaaatttcataaaaagcaccgttcataatttttaaatgttagcgcaat 47901958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 21766100 - 21766046
Alignment:
Q  23 aaaattaaaatttcataaaaaa-caccgtttataattttcaaatgttggcgcaat 76  Q
    ||||||||||||| |||||||| ||||||| |||||||||||| ||| |||||||    
T  21766100 aaaattaaaattttataaaaaaacaccgttcataattttcaaacgttagcgcaat 21766046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 48109801 - 48109843
Alignment:
Q  23 aaaattaaaatttcataaaaaa-caccgtttataattttcaaa 64  Q
    |||||||||||||||||||||| ||||||| ||||||||||||    
T  48109801 aaaattaaaatttcataaaaaatcaccgttcataattttcaaa 48109843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 20055805 - 20055850
Alignment:
Q  20 attaaaattaaaatttcataaaaaacaccgtttataattttcaaat 65  Q
    |||||||| ||||||||||||||||||  ||| |||||||||||||    
T  20055805 attaaaatcaaaatttcataaaaaacattgttcataattttcaaat 20055850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 32297805 - 32297764
Alignment:
Q  23 aaaattaaaatttcataaaaaacaccgtttataattttcaaa 64  Q
    |||||||||||||||||||||  |||||| ||||||||||||    
T  32297805 aaaattaaaatttcataaaaacaaccgttcataattttcaaa 32297764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 19371898 - 19371953
Alignment:
Q  23 aaaattaaaatttcataaaaa--acaccgtttataattttcaaatgttggcgcaat 76  Q
    ||||| |||||||||||||||  |||||||| |||||||| ||| |||||||||||    
T  19371898 aaaatcaaaatttcataaaaataacaccgttcataattttgaaacgttggcgcaat 19371953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 22479773 - 22479828
Alignment:
Q  23 aaaattaaaatttcat--aaaaaacaccgtttataattttcaaatgttggcgcaat 76  Q
    ||||||||||||||||  ||||||||  ||| |||||||||||||||| |||||||    
T  22479773 aaaattaaaatttcataaaaaaaacattgttcataattttcaaatgttagcgcaat 22479828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 31010075 - 31010028
Alignment:
Q  23 aaaattaaaatttcataaaaaacac--cgtttataattttcaaatgtt 68  Q
    ||||| |||||||||||||||| ||  |||||||||||||||||||||    
T  31010075 aaaatcaaaatttcataaaaaaaacatcgtttataattttcaaatgtt 31010028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 27832481 - 27832528
Alignment:
Q  29 aaaatttcataaaaaacaccgtttataattttcaaatgttggcgcaat 76  Q
    |||||||||||||||||| | ||||||||||| |||||||||||||||    
T  27832481 aaaatttcataaaaaacatcatttataatttttaaatgttggcgcaat 27832528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 8231142 - 8231097
Alignment:
Q  20 attaaaattaaaatttcataa-aaaacaccgtttataattttcaaa 64  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||    
T  8231142 attaaaattaaaatttcataacaaaacaccgttcataattttcaaa 8231097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 16313425 - 16313478
Alignment:
Q  23 aaaattaaaatttcataaaaaacaccgtttataattttcaaatgttggcgcaat 76  Q
    |||||||||||||||||||||||| | || |||||||||||| ||| |||||||    
T  16313425 aaaattaaaatttcataaaaaacatcattcataattttcaaacgttagcgcaat 16313478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 25781829 - 25781792
Alignment:
Q  23 aaaattaaaatttcataaaaaacaccgtttataatttt 60  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  25781829 aaaattaaaatttcataaaaaacaccgttcataatttt 25781792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 41863033 - 41863074
Alignment:
Q  23 aaaattaaaatttcataaaaaacaccgtttataattttcaaa 64  Q
    |||||||||||||||||||||||| |||| ||||||||||||    
T  41863033 aaaattaaaatttcataaaaaacatcgttcataattttcaaa 41863074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 36267344 - 36267384
Alignment:
Q  24 aaattaaaatttcataaaaaacaccgtttataattttcaaa 64  Q
    ||||||||||||||||||||||| |||| ||||||||||||    
T  36267344 aaattaaaatttcataaaaaacatcgttcataattttcaaa 36267384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 15232091 - 15232040
Alignment:
Q  23 aaaattaaaatttcataaaaaacaccgtttataattttcaaatgttggcgcaat 76  Q
    ||||||||||||||||||||| |  |||| |||||||||||| |||||||||||    
T  15232091 aaaattaaaatttcataaaaatc--cgttcataattttcaaacgttggcgcaat 15232040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 36092246 - 36092205
Alignment:
Q  24 aaattaaaatttcataaaaaa-caccgtttataattttcaaa 64  Q
    ||||||||||||| ||||||| ||||||||||||||||||||    
T  36092246 aaattaaaatttcctaaaaaaacaccgtttataattttcaaa 36092205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 248765 - 248820
Alignment:
Q  23 aaaattaaaatttcataaaa--aacaccgtttataattttcaaatgttggcgcaat 76  Q
    ||||| ||||||||||||||  ||||||||| |||||||||||| ||| |||||||    
T  248765 aaaatcaaaatttcataaaaaaaacaccgttcataattttcaaacgttagcgcaat 248820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 28096094 - 28096142
Alignment:
Q  29 aaaatttcataaaa-aacaccgtttataattttcaaatgttggcgcaat 76  Q
    |||||||||||||| ||||||||| |||| ||||||||||| |||||||    
T  28096094 aaaatttcataaaaaaacaccgttcataactttcaaatgttagcgcaat 28096142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 6829 - 6776
Alignment:
Q  24 aaattaaaatttcataaaaaa--caccgtttataattttcaaatgttggcgcaa 75  Q
    |||| ||||||||||||||||  ||||||| |||||||||||||||||||||||    
T  6829 aaatcaaaatttcataaaaaaaacaccgttaataattttcaaatgttggcgcaa 6776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 773918 - 773960
Alignment:
Q  23 aaaattaaaatttcataaaa-aacaccgtttataattttcaaa 64  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  773918 aaaattaaaatttcataaaaaaacaccgtttataattttcaaa 773960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 4968914 - 4968861
Alignment:
Q  23 aaaattaaaatttcataaaaaacaccgtttataattttcaaatgttggcgcaat 76  Q
    ||||| |||||||| |||||||||||||| |||||||||||| ||| |||||||    
T  4968914 aaaatcaaaatttcttaaaaaacaccgttcataattttcaaacgttagcgcaat 4968861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 40368180 - 40368233
Alignment:
Q  23 aaaattaaaatttcataaaaaacaccgtttataattttcaaatgttggcgcaat 76  Q
    ||||| |||||||||||||||||||| || ||||||| |||||||| |||||||    
T  40368180 aaaatcaaaatttcataaaaaacacctttcataatttacaaatgttagcgcaat 40368233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 132
Target Start/End: Complemental strand, 37705733 - 37705622
Alignment:
Q  23 aaaattaaaatttcataaaaaa-caccgtttataattttcaaatgttggcgcaatnnnnnnnncggaaagacggaca-gtgagtacccgtcttttcgcta 120  Q
    ||||| |||||||||||||||| ||||||| |||||||||||| ||| |||||||        | ||||||| || | |||||| |||||||||||||||    
T  37705733 aaaatcaaaatttcataaaaaaacaccgttcataattttcaaacgttagcgcaataaaaagagcagaaagacagatatgtgagtgcccgtcttttcgcta 37705634  T
Q  121 attattataata 132  Q
     |||| ||||||    
T  37705633 gttatgataata 37705622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 23773261 - 23773217
Alignment:
Q  23 aaaattaaaatttcataaaaaa---caccgtttataattttcaaa 64  Q
    ||||||||||||||||||||||   ||||||||||||||||||||    
T  23773261 aaaattaaaatttcataaaaaaaaacaccgtttataattttcaaa 23773217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 52043551 - 52043605
Alignment:
Q  23 aaaattaaaatttcat-aaaaaacaccgtttataattttcaaatgttggcgcaat 76  Q
    |||||||||||||||| |||||| || |||||||||||||||| ||| |||||||    
T  52043551 aaaattaaaatttcataaaaaaatactgtttataattttcaaacgttagcgcaat 52043605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 1581102 - 1581001
Alignment:
Q  20 attaaaattaaaatttcataaaaaacaccgtttataattttcaaatgttggcgcaatnnnnnnnncggaaagacggaca-gtgagtacccgtcttttcgc 118  Q
    |||||||| ||||||| ||||||||| || |||||||||||||||  || |||||||        ||||||||||||||  |||||  ||||||||||||    
T  1581102 attaaaatcaaaattttataaaaaacgccttttataattttcaaactttagcgcaataaaaagagcggaaagacggacacctgagtgtccgtcttttcgc 1581003  T
Q  119 ta 120  Q
    ||    
T  1581002 ta 1581001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 76
Target Start/End: Original strand, 7548653 - 7548690
Alignment:
Q  39 aaaaaacaccgtttataattttcaaatgttggcgcaat 76  Q
    |||||||||| ||||||||||||||||||| |||||||    
T  7548653 aaaaaacaccatttataattttcaaatgttagcgcaat 7548690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 9479709 - 9479754
Alignment:
Q  23 aaaattaaaatttcataaaaaacaccgtttataattttcaaatgtt 68  Q
    |||||||||| || |||||||| ||||||||||||||| |||||||    
T  9479709 aaaattaaaactttataaaaaataccgtttataatttttaaatgtt 9479754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 13262717 - 13262676
Alignment:
Q  22 taaaattaaaatttcataaaaaacaccgtttataattttcaa 63  Q
    |||||| ||||||||||| ||||||||||||| |||||||||    
T  13262717 taaaatcaaaatttcatataaaacaccgtttaaaattttcaa 13262676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 35547071 - 35547030
Alignment:
Q  23 aaaattaaaatttcataaaaaacaccgtttataattttcaaa 64  Q
    |||||||||||||||||||||| |||||| ||| ||||||||    
T  35547071 aaaattaaaatttcataaaaaataccgttgatatttttcaaa 35547030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 1149253 - 1149200
Alignment:
Q  23 aaaattaaaatttcataaaaaacaccgtttataattttcaaatgttggcgcaat 76  Q
    |||||||| ||||||||||||| |||||| |||||||||||| ||| |||||||    
T  1149253 aaaattaatatttcataaaaaataccgttcataattttcaaaagttagcgcaat 1149200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 5492897 - 5492856
Alignment:
Q  23 aaaattaaaatttcataaaaaacaccgtttataattttcaaa 64  Q
    |||||||||||||||||||||| |||||| ||||||||||||    
T  5492897 aaaattaaaatttcataaaaaataccgttcataattttcaaa 5492856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 27947926 - 27947979
Alignment:
Q  23 aaaattaaaatttcataaaaaacac-cgtttataattttcaaatgttggcgcaa 75  Q
    ||||| |||||||||||||||| || ||||||||||||||||||||| ||||||    
T  27947926 aaaatcaaaatttcataaaaaaaacacgtttataattttcaaatgttagcgcaa 27947979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 45879969 - 45880024
Alignment:
Q  23 aaaattaaaatttcataaaa--aacaccgtttataattttcaaatgttggcgcaat 76  Q
    ||||| ||||||||||||||  ||||||||| |||||||||||||||| |||||||    
T  45879969 aaaatcaaaatttcataaaaaaaacaccgttcataattttcaaatgttagcgcaat 45880024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 2454336 - 2454386
Alignment:
Q  20 attaaaattaaaatttcataaaa--aacaccgtttataattttcaaatgtt 68  Q
    |||||||| ||||||||||||||  ||||||||| ||||||||||||||||    
T  2454336 attaaaatcaaaatttcataaaaaaaacaccgttcataattttcaaatgtt 2454386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 30805792 - 30805738
Alignment:
Q  23 aaaattaaaatttcataaaaaac-accgtttataattttcaaatgttggcgcaat 76  Q
    ||||||||||||||| ||||||  ||||||||||||||||||| ||| |||||||    
T  30805792 aaaattaaaatttcacaaaaaaataccgtttataattttcaaacgttagcgcaat 30805738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 21495732 - 21495777
Alignment:
Q  23 aaaattaaaatttcataaaaaacaccgtttataattttcaaatgtt 68  Q
    ||||||||||||| |||||||||||  || ||||||||||||||||    
T  21495732 aaaattaaaattttataaaaaacactattcataattttcaaatgtt 21495777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 27398352 - 27398397
Alignment:
Q  23 aaaattaaaatttcataaaaaacaccgtttataattttcaaatgtt 68  Q
    ||||| |||||||||| |||||||| ||| ||||||||||||||||    
T  27398352 aaaatcaaaatttcatgaaaaacacagttcataattttcaaatgtt 27398397  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 18386818 - 18386763
Alignment:
Q  20 attaaaattaaaatttcataaaaaacaccgtttataattttcaaatgttggcgcaat 76  Q
    |||||||| |||||||||||||||||| | || ||||||||| |||||| |||||||    
T  18386818 attaaaatcaaaatttcataaaaaacaacattcataattttc-aatgttagcgcaat 18386763  T

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Target: scaffold0707 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 269 - 217
Alignment:
Q  23 aaaattaaaatttcataaaaaacaccgtttataattttcaaatgttggcgcaa 75  Q
    ||||||||||||| |||||||||| |||| |||||||||||| ||| ||||||    
T  269 aaaattaaaatttaataaaaaacatcgttcataattttcaaacgttagcgcaa 217  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 33573638 - 33573690
Alignment:
Q  23 aaaattaaaatttcataaaaaacaccgtttataattttcaaatgttggcgcaa 75  Q
    ||||||||||||| |||||||||| |||| |||||||||||| ||| ||||||    
T  33573638 aaaattaaaatttaataaaaaacatcgttcataattttcaaacgttagcgcaa 33573690  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 66
Target Start/End: Complemental strand, 4119032 - 4118989
Alignment:
Q  23 aaaattaaaatttcataaaaaacaccgtttataattttcaaatg 66  Q
    ||||| |||||||||||||||| |||||||||||||| ||||||    
T  4119032 aaaatcaaaatttcataaaaaataccgtttataatttacaaatg 4118989  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 31862016 - 31862070
Alignment:
Q  23 aaaattaaaatttcataaaa--aacaccgtttataattttcaaatgttggcgcaa 75  Q
    ||||| ||||||||||||||  |||||||||||||||||| |||||||| |||||    
T  31862016 aaaatcaaaatttcataaaaaaaacaccgtttataatttttaaatgttgacgcaa 31862070  T

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Target: scaffold0143 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0143
Description:

Target: scaffold0143; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 5645 - 5601
Alignment:
Q  23 aaaattaaaatttcataaaaaacaccgtttataattttcaaatgt 67  Q
    ||||| |||||||||| ||||||||| || |||||||||||||||    
T  5645 aaaatcaaaatttcatgaaaaacacccttcataattttcaaatgt 5601  T

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Target: scaffold0037 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 56887 - 56930
Alignment:
Q  23 aaaattaaaatttcata--aaaaacaccgtttataattttcaaa 64  Q
    |||||| ||||||||||  |||||||||||||||||||||||||    
T  56887 aaaattcaaatttcatacaaaaaacaccgtttataattttcaaa 56930  T

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Target: scaffold0037; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 64012 - 64055
Alignment:
Q  23 aaaattaaaatttcata--aaaaacaccgtttataattttcaaa 64  Q
    |||||| ||||||||||  |||||||||||||||||||||||||    
T  64012 aaaattcaaatttcatacaaaaaacaccgtttataattttcaaa 64055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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