View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11856_low_94 (Length: 204)
Name: NF11856_low_94
Description: NF11856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11856_low_94 |
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Alignment Details
Target: chr7 (Bit Score: 149; Significance: 7e-79; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 19 - 184
Target Start/End: Complemental strand, 26629205 - 26629038
Alignment:
| Q |
19 |
aaaatgatgtttaattcacatgactaaattcatgatacat--tacatagtacattacataacaatgagttgtgttgtgtctaaactctaaatagctaaca |
116 |
Q |
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|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
26629205 |
aaaatgatgtttaattcacatgaccaaattcatgatacatagtacatagtacattacataacaatgagttgtgttgtgtctaaactttaaatagctaaca |
26629106 |
T |
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| Q |
117 |
caagtccaggaagtgacctacgataaagatcacgaggttgacttctccacaatgtcatgttatcttgc |
184 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26629105 |
caagtccaggaagtgacctacgataaagatcacgaggttgacttctccacaatgtcatgttatcttgc |
26629038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 19 - 184
Target Start/End: Complemental strand, 26637690 - 26637523
Alignment:
| Q |
19 |
aaaatgatgtttaattcacatgactaaattcatgatacat--tacatagtacattacataacaatgagttgtgttgtgtctaaactctaaatagctaaca |
116 |
Q |
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|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
26637690 |
aaaatgatgtttaattcacatgaccaaattcatgatacatagtacatagtacattacataacaatgagttgtgttgtgtctaaactctaaataggtaaca |
26637591 |
T |
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| Q |
117 |
caagtccaggaagtgacctacgataaagatcacgaggttgacttctccacaatgtcatgttatcttgc |
184 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26637590 |
caagtccaggaagtgacctacgataaagatcacgaggttgacttctccacaatgtcatgttatcttgc |
26637523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 102 - 184
Target Start/End: Complemental strand, 26614145 - 26614063
Alignment:
| Q |
102 |
tctaaatagctaacacaagtccaggaagtgacctacgataaagatcacgaggttgacttctccacaatgtcatgttatcttgc |
184 |
Q |
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| T |
26614145 |
tctaaatagccaagacaagtccaggaagtgacctacgataaagatcacgaggttgacttctccacaatgtcatgttatcttgc |
26614063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 102 - 184
Target Start/End: Complemental strand, 26649669 - 26649587
Alignment:
| Q |
102 |
tctaaatagctaacacaagtccaggaagtgacctacgataaagatcacgaggttgacttctccacaatgtcatgttatcttgc |
184 |
Q |
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|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26649669 |
tctaaatagccaagacaagtccaggaagtgacctacgataaagatcacgaggttgacttctccacaatgtcatgttatcttgc |
26649587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 102 - 184
Target Start/End: Complemental strand, 26717111 - 26717029
Alignment:
| Q |
102 |
tctaaatagctaacacaagtccaggaagtgacctacgataaagatcacgaggttgacttctccacaatgtcatgttatcttgc |
184 |
Q |
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|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26717111 |
tctaaatagccaagacaagtccaggaagtgacctacgataaagatcacgaggttgacttctccacaatgtcatgttatcttgc |
26717029 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 26614244 - 26614203
Alignment:
| Q |
19 |
aaaatgatgtttaattcacatgactaaattcatgatacatta |
60 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| |
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| T |
26614244 |
aaaatgatgtttaattcacatgaccaaattcatgatacatta |
26614203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 26629303 - 26629265
Alignment:
| Q |
19 |
aaaatgatgtttaattcacatgactaaattcatgataca |
57 |
Q |
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|||||||||||||||||||||||| |||||||||||||| |
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| T |
26629303 |
aaaatgatgtttaattcacatgaccaaattcatgataca |
26629265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 26649776 - 26649736
Alignment:
| Q |
19 |
aaaatgatgtttaattcacatgactaaattcatgatacatt |
59 |
Q |
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|||||||||||||||||||| ||| |||||||||||||||| |
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| T |
26649776 |
aaaatgatgtttaattcacaggacgaaattcatgatacatt |
26649736 |
T |
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