View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11856_low_95 (Length: 202)
Name: NF11856_low_95
Description: NF11856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11856_low_95 |
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Alignment Details
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 15 - 184
Target Start/End: Complemental strand, 280601 - 280432
Alignment:
| Q |
15 |
cacagacaagctagaaagaacttatggataaaatacaatacaagagcaagagggagaatatgatatatctatccatcccttaattatatctaaaataaac |
114 |
Q |
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| T |
280601 |
cacagacaagctagaaagaacttatggataaaatataatacaagagcaagagggagaatatgatatatctatccatcccttaattatatctaaaataaac |
280502 |
T |
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| Q |
115 |
atctttataataataaactatagtagtattgaattgtgatattgaatatgtttcaatcagatgcattttg |
184 |
Q |
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| T |
280501 |
atctttataataataaactatagcagtattgaattgtgatattgaatatgtttcaatcagatgcattttg |
280432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 635251 - 635420
Alignment:
| Q |
15 |
cacagacaagctagaaagaacttatggataaaatacaatacaagagcaagagggagaatatgatatatctatccatcccttaattatatctaaaataaac |
114 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
635251 |
cacagacaagctagaaagaacttatggataaaatataatacaagagcaagagggagaatatgatatatctatccatcccttaattatatctaaaataaac |
635350 |
T |
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| Q |
115 |
atctttataataataaactatagtagtattgaattgtgatattgaatatgtttcaatcagatgcattttg |
184 |
Q |
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| T |
635351 |
atctttataataataaactatagcagtattgaattgtgatattgaatatgtttcaatcagatgcattttg |
635420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 821054 - 821223
Alignment:
| Q |
15 |
cacagacaagctagaaagaacttatggataaaatacaatacaagagcaagagggagaatatgatatatctatccatcccttaattatatctaaaataaac |
114 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
821054 |
cacagacaagctagaaagaacttatggataaaatataatacaagagcaagagggagaatatgatatatctatccatcccttaattatatctaaaataaac |
821153 |
T |
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| Q |
115 |
atctttataataataaactatagtagtattgaattgtgatattgaatatgtttcaatcagatgcattttg |
184 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
821154 |
atctttataataataaactatagcagtattgaattgtgatattgaatatgtttcaatcagatgcattttg |
821223 |
T |
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