View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11857_high_13 (Length: 317)

Name: NF11857_high_13
Description: NF11857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11857_high_13
NF11857_high_13
[»] chr5 (2 HSPs)
chr5 (19-317)||(34770405-34770710)
chr5 (19-315)||(34781352-34781655)


Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 19 - 317
Target Start/End: Complemental strand, 34770710 - 34770405
Alignment:
Q  19 aattctaccctttgcatcacattaccaacaaagaaatcaatactatcttccattgggacatcat---tgagccacaaaaccatcgtgtatggacatccta 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||| ||||||||||||||    
T  34770710 aattctaccctttgcatcacattaccaacaaagaaatcaatactatcttccattgggacatcatcattgagccacaaaaccatcgcgtatggacatccta 34770611  T
Q  116 tcaagacaatgtaaaatagtttttggatcaacctcacacttactagttactacaccaaggattacaaatcttcataacatgattttggtaatttgtgatc 215  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34770610 tcaagacaatgtaaagtagtttttggatcaacctcacacttactagttactacaccaaggattacaaatcttcataacatgattttggtaatttgtgatc 34770511  T
Q  216 aatctatcatgtaacacaagctataagaagtatttaatgttttcctgaacctaaagcttccaaattttactacatg----actcaagtaaaattacatat 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||    
T  34770510 aatctatcatgtaacacaagctataagaagtatttaatgttttcctgaacctaaagcttccaaattttactacatgacgtactcaagtaaaattacatat 34770411  T
Q  312 ttaagg 317  Q
    ||||||    
T  34770410 ttaagg 34770405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 19 - 315
Target Start/End: Complemental strand, 34781655 - 34781352
Alignment:
Q  19 aattctaccctttgcatcacattaccaacaaagaaatcaatactatcttccattgggacatcat---tgagccacaaaaccatcgtgtatggacatccta 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||| ||||||||||||||    
T  34781655 aattctaccctttgcatcacattaccaacaaagaaatcaatactatcttccattgggacatcatcattgagccacaaaaccatcgcgtatggacatccta 34781556  T
Q  116 tcaagacaatgtaaaatagtttttggatcaacctcacacttactagttactacaccaaggattacaaatcttcataacatgattttggtaatttgtgatc 215  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34781555 tcaagacaatgtaaagtagtttttggatcaacctcacacttactagttactacaccaaggattacaaatcttcataacatgattttggtaatttgtgatc 34781456  T
Q  216 aatctatcatgtaacacaagctataagaagtatttaatgttttcctgaacctaaagcttccaaattttactacatg----actcaagtaaaattacatat 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||    
T  34781455 aatctatcatgtaacacaagctataagaagtatttaatgttttcctgaacctaaagcttccaaattttactacatgacgtactcaagtaaaattacatat 34781356  T
Q  312 ttaa 315  Q
    ||||    
T  34781355 ttaa 34781352  T

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