View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11857_high_15 (Length: 298)
Name: NF11857_high_15
Description: NF11857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11857_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 31219681 - 31219438
Alignment:
| Q |
1 |
gaaatctaaacttgtataccacttatatacatgtgtacgaagagtgctatacttagatcctttgaatcacaaaacgtttcaatgtccatgaatcacaata |
100 |
Q |
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| T |
31219681 |
gaaatataaacttgtataccacttatatacatatgtacgaagagtgctatacttagattctttgaatcacaaaacgtttcaatgtccatgaatcacaata |
31219582 |
T |
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| Q |
101 |
gcgtgagttctaagactaagcct-------acaaaatgttgaaaacgtgaattgctttatttacctttcttccaagaagaggaaaactttcaatgacatt |
193 |
Q |
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| T |
31219581 |
gcgtgagttctaagactaagcctaaacatgacaaaatgttgaaaacgtgaattgctttatttacctttcttccaagaagagtaaaactttcaacgacatt |
31219482 |
T |
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| Q |
194 |
ataaaagtgatgggatgaaacatgaattgatgagtaacactaag |
237 |
Q |
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| T |
31219481 |
ataaaagtgatgggatgaaacatggattgatgagtaatactaag |
31219438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 231 - 282
Target Start/End: Complemental strand, 31219282 - 31219233
Alignment:
| Q |
231 |
cactaagacgttgtgatgcaggaagtatatataacattaaggtatagaagac |
282 |
Q |
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| T |
31219282 |
cactaagacgttgtgatgcaggaagta--tataacattaaggtatagaagac |
31219233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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