View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11857_high_20 (Length: 271)
Name: NF11857_high_20
Description: NF11857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11857_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 81 - 255
Target Start/End: Complemental strand, 5719798 - 5719624
Alignment:
| Q |
81 |
cccttcattattcatatatctccaaatgttattctatgttttttgttcctcttacaatcaatgagactcccaaaaaagtccaatcccagaaactnnnnnn |
180 |
Q |
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| T |
5719798 |
cccttcattattcatatatctccaaatgttattctatgttttttgttcctcttacaatcaatgagactcccaaaaaagtccaatcccagaaactaaaaaa |
5719699 |
T |
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| Q |
181 |
ntaaagttactccaatcaacttaaccaggaaaatgaaaactacaacaattgatttcaattctttccgttccattt |
255 |
Q |
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| T |
5719698 |
ataaagttactccaatcaacttaaccaggaaaatgaaaactacaacaattgatttcaattctttccgttccattt |
5719624 |
T |
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