View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11857_high_25 (Length: 235)
Name: NF11857_high_25
Description: NF11857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11857_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 4 - 222
Target Start/End: Original strand, 38711127 - 38711345
Alignment:
| Q |
4 |
cggtgattgtgttggagcagtcttgctggtagcacttggcgaaggagccttccaagcaggtgattgtgatggggagtgtgttggagcattccaaccgata |
103 |
Q |
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| T |
38711127 |
cggtgattgtgttggagcagtcttgctggtagcacttggtgaaggagccttccaagcaggtgattgtgatggggagtgtgttggagcattccaaccgata |
38711226 |
T |
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| Q |
104 |
gcacttggtgaaggagcattccatctagtagcacttggtgtcggagcaatccatgctggagacgttgctggggagtgtaccggtgcaacgaaaggtgatg |
203 |
Q |
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| T |
38711227 |
gcacttggtgaaggagcattccatctagtagcacttggtgtcggagcaatccatgctggagacgttgctggggagtgtaccggtgcaacgaaaggtgatg |
38711326 |
T |
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| Q |
204 |
atgatggaccttgatgtcc |
222 |
Q |
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| T |
38711327 |
atgatggaccttgatgtcc |
38711345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 31 - 126
Target Start/End: Original strand, 38710959 - 38711054
Alignment:
| Q |
31 |
ggtagcacttggcgaaggagccttccaagcaggtgattgtgatggggagtgtgttggagcattccaaccgatagcacttggtgaaggagcattcca |
126 |
Q |
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| T |
38710959 |
ggtagcacttggtgaaggagcatgccaagccggtgattgtgttggagagtgtgtcggagtagtccaaccggtagcacttggtgaagaagcactcca |
38711054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 31 - 126
Target Start/End: Original strand, 38711028 - 38711123
Alignment:
| Q |
31 |
ggtagcacttggcgaaggagccttccaagcaggtgattgtgatggggagtgtgttggagcattccaaccgatagcacttggtgaaggagcattcca |
126 |
Q |
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| T |
38711028 |
ggtagcacttggtgaagaagcactccaagtcggtgattgtgttggggagtgtgcgggagcagtccagccggtagcacttggtgaaggagcattcca |
38711123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 126
Target Start/End: Original strand, 38710837 - 38710916
Alignment:
| Q |
47 |
ggagccttccaagcaggtgattgtgatggggagtgtgttggagcattccaaccgatagcacttggtgaaggagcattcca |
126 |
Q |
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| T |
38710837 |
ggagcattccaagctgatgattgtgctggagaatgtgtaggggcagtccaaccggtagcacttggtgtcggagcattcca |
38710916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 122
Target Start/End: Original strand, 38710890 - 38710981
Alignment:
| Q |
31 |
ggtagcacttggcgaaggagccttccaagcaggtgattgtgatggggagtgtgttggagcattccaaccgatagcacttggtgaaggagcat |
122 |
Q |
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| T |
38710890 |
ggtagcacttggtgtcggagcattccaacccgatgattttgttggagaatgtgcaggagcagtccaaccggtagcacttggtgaaggagcat |
38710981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 126
Target Start/End: Complemental strand, 39705063 - 39704971
Alignment:
| Q |
34 |
agcacttggcgaaggagccttccaagcaggtgattgtgatggggagtgtgttggagcattccaaccgatagcacttggtgaaggagcattcca |
126 |
Q |
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| T |
39705063 |
agcacttgacgagggagcattccaagctggcgattgtactggggagtgtgccggagcagtccagacaatagcacttggtgagggagcattcca |
39704971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 220
Target Start/End: Complemental strand, 39711272 - 39711213
Alignment:
| Q |
161 |
ggagacgttgctggggagtgtaccggtgcaacgaaaggtgatgatgatggaccttgatgt |
220 |
Q |
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| T |
39711272 |
ggagacggtgctggggagtataccggtgcaaccatcggagatgatgatggaccttgatgt |
39711213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 91
Target Start/End: Complemental strand, 39704995 - 39704937
Alignment:
| Q |
33 |
tagcacttggcgaaggagccttccaagcaggtgattgtgatggggagtgtgttggagca |
91 |
Q |
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| T |
39704995 |
tagcacttggtgagggagcattccaagctggtggttgtgttggggagcgtgttggagca |
39704937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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