View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11857_low_1 (Length: 931)

Name: NF11857_low_1
Description: NF11857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11857_low_1
NF11857_low_1
[»] chr3 (5 HSPs)
chr3 (399-912)||(33991088-33991601)
chr3 (12-336)||(33990701-33991025)
chr3 (52-82)||(1116401-1116431)
chr3 (48-85)||(4216083-4216120)
chr3 (30-83)||(35335587-35335640)
[»] chr4 (6 HSPs)
chr4 (679-856)||(42867826-42868003)
chr4 (26-68)||(7367535-7367577)
chr4 (264-334)||(42868453-42868523)
chr4 (31-79)||(43843634-43843682)
chr4 (520-558)||(41571464-41571502)
chr4 (425-479)||(42868177-42868231)
[»] chr5 (4 HSPs)
chr5 (679-856)||(18854669-18854846)
chr5 (422-482)||(18854946-18855006)
chr5 (264-332)||(18855231-18855299)
chr5 (50-86)||(6760514-6760550)
[»] chr1 (2 HSPs)
chr1 (26-86)||(3523373-3523433)
chr1 (37-79)||(52156777-52156819)
[»] chr7 (2 HSPs)
chr7 (14-69)||(41775203-41775258)
chr7 (48-86)||(438696-438734)
[»] chr8 (1 HSPs)
chr8 (14-68)||(14227192-14227246)
[»] chr2 (1 HSPs)
chr2 (520-558)||(26004210-26004248)
[»] chr6 (2 HSPs)
chr6 (51-84)||(4323114-4323147)
chr6 (41-78)||(32926315-32926352)


Alignment Details
Target: chr3 (Bit Score: 498; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 399 - 912
Target Start/End: Original strand, 33991088 - 33991601
Alignment:
Q  399 acaatatttgatgtttatttatatttcagagagaactatggctgtgatgttgtttgcttcactgctgatctaggccaagtatgttctaatctgtacataa 498  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33991088 acaatatttgatgtttatttatatttcagagagaactatggctgtgatgttgtttgcttcactgctgatctaggccaagtatgttctaatctgtacataa 33991187  T
Q  499 atatgatcaatagtctctaatgtatataaaatccttcaatttagtccctgctattaagattcatatgtcaaagactaaattacaggatttcatacacttt 598  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  33991188 atatgataaatagtctctaatgtatataaaatccttcaatttagtccctgctattaagattcagatgtcaaagactaaattgcaggatttcatacacttt 33991287  T
Q  599 agaaactgaattgacggatgtcatttactttaattgctgcatgcttgattaacaaatgcaaattttcttagggggcaagtgaattggaaggtttagaaga 698  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33991288 agaaactgaattgactgatgtcatttactttaattgctgcatgcttgattaacaaatgcaaattttcttagggggcaagtgaattggaaggtttagaaga 33991387  T
Q  699 gaaggcaaaagccagcggagcttctcagttagtcgtgaaggatttgaaggaggaatttgttagggattatgtattcccttgcctgcgtgccggtgcaatt 798  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33991388 gaaggcaaaagccagcggagcttctcagttagtcgtgaaggatttgaaggaggaatttgttagggattatgtattcccttgcctgcgtgccggtgcaatt 33991487  T
Q  799 tatgagaggaagtatttgcttggaactgcaatagctcgccctgtaattgcaaaggtacaattctgctttggttcttagcttgctaagttaattaaaagca 898  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33991488 tatgagaggaagtatttgcttggaactgcaatagctcgccctgtaattgcaaaggtacaattctgctttggttcttagcttgctaagttaattaaaagca 33991587  T
Q  899 gtaatgtcaaccct 912  Q
    ||||||||||||||    
T  33991588 gtaatgtcaaccct 33991601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 12 - 336
Target Start/End: Original strand, 33990701 - 33991025
Alignment:
Q  12 agcacagacactggacacgacactaacacatagacgccaataataatttgagaaaattgaagtgattaaatgtaaaccattggtcagtgtcatacaccag 111  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  33990701 agcacatacactggacacgacactaacacatagacgccaataataatttgagaaaattgaagtgcttaaatgtaaaccatgggtcagtgtcatacaccag 33990800  T
Q  112 aatccagatatgttcagtgttatctgataattgagttttaagtttaatgtctctaacagtgaagttttattgaaatgcagttataaaagctgtgctatat 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33990801 aatccagatatgttcagtgttatctgataattgagttttaagtttaatgtctctaacagtgaagttttattgaaatgcagttataaaagctgtgctatat 33990900  T
Q  212 aaagacgttgaaatttctgagaccaagaaggttgctggactaaaaggtaaactgaataaggttgttctggcttatagtggtggcttagacacatcggttg 311  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33990901 aaagacgtagaaatttctgagaccaagaaggttgctggactaaaaggtaaattgaataaggttgttctggcttatagtggtggcttagacacatcggttg 33991000  T
Q  312 ttgtcccctggctgaggtatataaa 336  Q
    |||||||||||||||||||||||||    
T  33991001 ttgtcccctggctgaggtatataaa 33991025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 82
Target Start/End: Original strand, 1116401 - 1116431
Alignment:
Q  52 taataatttgagaaaattgaagtgattaaat 82  Q
    |||||||||||||||||||||||||||||||    
T  1116401 taataatttgagaaaattgaagtgattaaat 1116431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 4216120 - 4216083
Alignment:
Q  48 ccaataataatttgagaaaattgaagtgattaaatgta 85  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  4216120 ccaataataattaaagaaaattgaagtgattaaatgta 4216083  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 35335587 - 35335640
Alignment:
Q  30 gacactaacacatagacgccaataataatttgagaaaattgaagtgattaaatg 83  Q
    |||||| |||||||||| | | |||||||||||||||||  |||||||||||||    
T  35335587 gacactgacacatagacactagtaataatttgagaaaatgaaagtgattaaatg 35335640  T

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Target: chr4 (Bit Score: 86; Significance: 1e-40; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 679 - 856
Target Start/End: Complemental strand, 42868003 - 42867826
Alignment:
Q  679 gaattggaaggtttagaagagaaggcaaaagccagcggagcttctcagttagtcgtgaaggatttgaaggaggaatttgttagggattatgtattccctt 778  Q
    |||||||| ||||| ||||  || ||||||||||| ||||| || || |||||||| ||||| |||||||||||||||||||  ||||| ||||| ||||    
T  42868003 gaattggatggtttggaagccaaagcaaaagccagtggagcctcccaattagtcgtaaaggacttgaaggaggaatttgttaaagattacgtatttcctt 42867904  T
Q  779 gcctgcgtgccggtgcaatttatgagaggaagtatttgcttggaactgcaatagctcgccctgtaattgcaaaggtac 856  Q
    |||||||||| ||||| |||||||||||||||||||||||||| ||  |||| || || |||||||||||||||||||    
T  42867903 gcctgcgtgctggtgccatttatgagaggaagtatttgcttgggacctcaatggcccgtcctgtaattgcaaaggtac 42867826  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 68
Target Start/End: Original strand, 7367535 - 7367577
Alignment:
Q  26 acacgacactaacacatagacgccaataataatttgagaaaat 68  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  7367535 acacgacactaacacatagacaccaataataatttgagaaaat 7367577  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 264 - 334
Target Start/End: Complemental strand, 42868523 - 42868453
Alignment:
Q  264 tgaataaggttgttctggcttatagtggtggcttagacacatcggttgttgtcccctggctgaggtatata 334  Q
    ||||||||||||| || ||||| |||||||||||||||||||| ||  ||||||| ||| |||||||||||    
T  42868523 tgaataaggttgtacttgcttacagtggtggcttagacacatcagtcattgtcccatggttgaggtatata 42868453  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 43843682 - 43843634
Alignment:
Q  31 acactaacacatagacgccaataataatttgagaaaattgaagtgatta 79  Q
    |||||||||| ||||| |||||||||||||||||||||  |||||||||    
T  43843682 acactaacacgtagacaccaataataatttgagaaaataaaagtgatta 43843634  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 520 - 558
Target Start/End: Complemental strand, 41571502 - 41571464
Alignment:
Q  520 gtatataaaatccttcaatttagtccctgctattaagat 558  Q
    ||||||||||||| |||| ||||||||||||||||||||    
T  41571502 gtatataaaatccgtcaacttagtccctgctattaagat 41571464  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 425 - 479
Target Start/End: Complemental strand, 42868231 - 42868177
Alignment:
Q  425 cagagagaactatggctgtgatgttgtttgcttcactgctgatctaggccaagta 479  Q
    ||||||||| || || ||||||||||| ||||||||||||||| | |||||||||    
T  42868231 cagagagaattacggttgtgatgttgtgtgcttcactgctgatgttggccaagta 42868177  T

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Target: chr5 (Bit Score: 82; Significance: 3e-38; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 679 - 856
Target Start/End: Complemental strand, 18854846 - 18854669
Alignment:
Q  679 gaattggaaggtttagaagagaaggcaaaagccagcggagcttctcagttagtcgtgaaggatttgaaggaggaatttgttagggattatgtattccctt 778  Q
    |||||||| ||||||||||  || || ||| |||| || || ||||| |||||||| ||||| |||||||||||||||||||  ||||| ||||| ||||    
T  18854846 gaattggacggtttagaagctaaagccaaatccagtggggcatctcaattagtcgtaaaggacttgaaggaggaatttgttaaagattacgtatttcctt 18854747  T
Q  779 gcctgcgtgccggtgcaatttatgagaggaagtatttgcttggaactgcaatagctcgccctgtaattgcaaaggtac 856  Q
    |||||||||| ||||| |||||||||||||||||||||||||| ||  |||| || || |||||||||||||||||||    
T  18854746 gcctgcgtgctggtgctatttatgagaggaagtatttgcttgggacctcaatggcacgtcctgtaattgcaaaggtac 18854669  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 422 - 482
Target Start/End: Complemental strand, 18855006 - 18854946
Alignment:
Q  422 tttcagagagaactatggctgtgatgttgtttgcttcactgctgatctaggccaagtatgt 482  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||    
T  18855006 tttcagagagaattatggctgtgatgttgtttgcttcactgctgatgttggccaagtatgt 18854946  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 264 - 332
Target Start/End: Complemental strand, 18855299 - 18855231
Alignment:
Q  264 tgaataaggttgttctggcttatagtggtggcttagacacatcggttgttgtcccctggctgaggtata 332  Q
    |||||||||||||  ||||||| || ||||||||||||||||||||  ||||||| |||||||||||||    
T  18855299 tgaataaggttgtattggcttacagcggtggcttagacacatcggtcattgtcccatggctgaggtata 18855231  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 6760550 - 6760514
Alignment:
Q  50 aataataatttgagaaaattgaagtgattaaatgtaa 86  Q
    |||||||||||||||||||| ||||||||||||||||    
T  6760550 aataataatttgagaaaatttaagtgattaaatgtaa 6760514  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 3523373 - 3523433
Alignment:
Q  26 acacgacactaacacatagacgccaataataatttgagaaaattgaagtgattaaatgtaa 86  Q
    |||||||||| |||| ||||| || |||||||||||| ||||| ||||||||| |||||||    
T  3523373 acacgacactgacacgtagacaccgataataatttgataaaatagaagtgattgaatgtaa 3523433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 79
Target Start/End: Complemental strand, 52156819 - 52156777
Alignment:
Q  37 acacatagacgccaataataatttgagaaaattgaagtgatta 79  Q
    |||||||||||| |||||||| |||||||||| ||||||||||    
T  52156819 acacatagacgctaataataacttgagaaaatggaagtgatta 52156777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 41775203 - 41775258
Alignment:
Q  14 cacagacactggacacgacactaacacatagacgccaataataatttgagaaaatt 69  Q
    ||||||||| |||||||||||||| |||| | | || |||||||||||||||||||    
T  41775203 cacagacaccggacacgacactaagacatggccaccgataataatttgagaaaatt 41775258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 86
Target Start/End: Complemental strand, 438734 - 438696
Alignment:
Q  48 ccaataataatttgagaaaattgaagtgattaaatgtaa 86  Q
    ||||||||||||| ||||||||||||| |||||||||||    
T  438734 ccaataataatttaagaaaattgaagtaattaaatgtaa 438696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 14227192 - 14227246
Alignment:
Q  14 cacagacactggacacgacactaacacatagacgccaataataatttgagaaaat 68  Q
    ||||||||||||||||| |||| |||| |  || |||||||||||||||||||||    
T  14227192 cacagacactggacacgtcactgacacgtcaacaccaataataatttgagaaaat 14227246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 520 - 558
Target Start/End: Original strand, 26004210 - 26004248
Alignment:
Q  520 gtatataaaatccttcaatttagtccctgctattaagat 558  Q
    ||||||||||||| ||||||||||||||| |||||||||    
T  26004210 gtatataaaatccatcaatttagtccctgatattaagat 26004248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 84
Target Start/End: Original strand, 4323114 - 4323147
Alignment:
Q  51 ataataatttgagaaaattgaagtgattaaatgt 84  Q
    |||| |||||||||||||||||||||||||||||    
T  4323114 ataacaatttgagaaaattgaagtgattaaatgt 4323147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 78
Target Start/End: Complemental strand, 32926352 - 32926315
Alignment:
Q  41 atagacgccaataataatttgagaaaattgaagtgatt 78  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  32926352 atagacaccaataataatttaagaaaattgaagtgatt 32926315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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