View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11857_low_10 (Length: 365)
Name: NF11857_low_10
Description: NF11857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11857_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 17 - 324
Target Start/End: Original strand, 50029652 - 50029959
Alignment:
| Q |
17 |
gaacacagttgaatgtagtaggaccggtccagtcgagcacaagagtttgtgtagattggggcacatggattctcctcccccagcttcaactatcgacagc |
116 |
Q |
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| T |
50029652 |
gaacacagttgaatgtagtaggaccggtccagtcgagcacaagagtttgtgtagattggggcacatggattctcctcccccagcttcaactttcgacggc |
50029751 |
T |
|
| Q |
117 |
ccataaagaatgaagagtttcagattcttatatagtgtaaagaagctgatgcagtgtggcgtaaattatatgtttcacgagtttttccgatcctaatagg |
216 |
Q |
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| T |
50029752 |
ccataaagaatgaagagttccagattcttatatagtgtaaagaagctgatgcagtgtggcgtaaattatatgtttcacgagtttttccgaccctaatagg |
50029851 |
T |
|
| Q |
217 |
gtataaattgacttttttaaaattatcgatgaaacggaaactgcttaaagttgccactagtatgtgccaacacaaatacattagtcaaaacgtgaaatga |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50029852 |
gtataaattgacttttttaaaattatcgatgaaacggaaactgcttaaagttgccactagtatgtgccaacacaaatacattagtcaaaacgtgaaatga |
50029951 |
T |
|
| Q |
317 |
tctcaaat |
324 |
Q |
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|||||||| |
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| T |
50029952 |
tctcaaat |
50029959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 17 - 324
Target Start/End: Complemental strand, 7698661 - 7698359
Alignment:
| Q |
17 |
gaacacagttgaatgtagtaggaccggtccagtcgagcacaagagtttgtgtagattggggcacatggattctcctcccccagcttcaactatcgacagc |
116 |
Q |
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||||||| |||| |||||||||| || ||| || ||||||||||||||||||| ||||| | || || ||| ||||| |||| ||||| ||| |||| |
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| T |
7698661 |
gaacacaattgattgtagtaggatcgatccggtagagcacaagagtttgtgtaaattggtgtacttgtattttcctctcccaccttcagagttcggcagc |
7698562 |
T |
|
| Q |
117 |
ccataaagaatgaagagtttcagattcttatatagtgtaaagaagctgatgcagtgtggcgtaaattatatgtttcacgagtttttccgatcctaatagg |
216 |
Q |
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||| ||| ||||||||||| |||||||||||||| ||||||||||||| || || ||||| ||||| ||||||| |||| |||||| || |||||||| |
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| T |
7698561 |
ccagaaaaaatgaagagttccagattcttatatattgtaaagaagctggtgtagcgtggcttaaat--tatgttttacgaatttttcagactctaatagg |
7698464 |
T |
|
| Q |
217 |
gtata------aattgacttttttaaaattatcgatgaaacggaaactgcttaaagttgccactagtatgtgccaacacaaatacattagtcaaaacgtg |
310 |
Q |
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| ||| |||| | ||||| |||||||||||||| | ||| |||||||| || ||| ||| | ||||||||||||| |||||||||||| |
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| T |
7698463 |
ggatattttttaatttatttttt---aattatcgatgaaaagtaaaatgcttaaa------accagtttgtcctaacacaaatacataagtcaaaacgtg |
7698373 |
T |
|
| Q |
311 |
aaatgatctcaaat |
324 |
Q |
| |
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|||||| |||||| |
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| T |
7698372 |
gaatgatatcaaat |
7698359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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