View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11857_low_11 (Length: 357)
Name: NF11857_low_11
Description: NF11857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11857_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 345
Target Start/End: Original strand, 37620443 - 37620793
Alignment:
| Q |
18 |
ggaactggaagcctagcgaatttaacacaatccaaaatctcccactattcaaactctccaacaaattggtaggcatcatagttttcaaaagagcctttta |
117 |
Q |
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| T |
37620443 |
ggaactggaagcctagcgaatttaacacaatccaaaatctcccactattcaaactctccaacaaattggtaggcatcatagttttcaaaagagcctttta |
37620542 |
T |
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| Q |
118 |
gaaaacttcatgacaattcaatcgaggtgtcatatcaagagattagaaaacaatttaaagagattaaggaacaaaatctcttaatcatggatggtatcaa |
217 |
Q |
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| T |
37620543 |
gaaaacttcatgacaattcaatcgaggtgtcatatcaagagattagaaaacaatttaaagagattaaggaacaaaatctcttaatcatggatggtatcaa |
37620642 |
T |
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| Q |
218 |
attcttagcctccaatgcagactatgtcctcccacacaaaatta---------------------aaatctcttccaaagcacataccacatcaaacaaa |
296 |
Q |
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| T |
37620643 |
attcttagcctccaatgcagactatgtcctcccacacaaaattaaaatctctcaaacttttaacgaaatctcttccaaagcacataccacatcaaacaaa |
37620742 |
T |
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| Q |
297 |
cctccaataattaggtagattt--gatctaattcataccgtatagtttctc |
345 |
Q |
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| T |
37620743 |
cctccaataattaggtagatttggggtctaattcataccgtatagtttctc |
37620793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 226
Target Start/End: Original strand, 13967521 - 13967627
Alignment:
| Q |
118 |
gaaaacttcatgacaattcaatcgaggtgtcatatcaagagattagaaaacaatttaaagagattaaggaacaaaatctcttaatcatggatggtatcaa |
217 |
Q |
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||||||||||||| ||| ||||| | | ||||| ||||||| || | |||||| ||||| ||||| |||||||||||||| || ||||||| |||| | |
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| T |
13967521 |
gaaaacttcatgataatacaatctaagcgtcatg--aagagataaggagacaattcaaagatattaaagaacaaaatctctttataatggatgctatcca |
13967618 |
T |
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| Q |
218 |
attcttagc |
226 |
Q |
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| T |
13967619 |
atttttagc |
13967627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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