View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11857_low_12 (Length: 347)
Name: NF11857_low_12
Description: NF11857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11857_low_12 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 11 - 347
Target Start/End: Complemental strand, 25216589 - 25216253
Alignment:
| Q |
11 |
caaaggtacagagatttggagtggataactgaaatttcatctcagacatggaaaagccagattgtattcttaaattggctagtgtggcattcactatgca |
110 |
Q |
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| T |
25216589 |
caaaggtacagagatttggagtggataactgaaatttcatctcagacatggaaaagccagattgtattcttaaattggctagtgtggcattcactatgca |
25216490 |
T |
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| Q |
111 |
gaggtttaaataatcacgaactatacaaccggtaatgaccaaagtatttaatttgtttaacgttgaaaagggattgacacgaccatcatcgccgacacaa |
210 |
Q |
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| T |
25216489 |
gaggtttaaataatcacgaactatacaaccggtaatgaccaaagtatttaatttgtttaacgttgaaaagggattgacacgaccatcatcgccgacacaa |
25216390 |
T |
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| Q |
211 |
aatataaaacgatgtaaagacaagttggttatttgtggtaaatttagagaagtaggaaataaattttgatgagaataatagtcaattttgagtttaagag |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25216389 |
aatataaaacgatgtaaagacaagttggttatttgtggtaaatttagagaagtaggaaataaattttgatgagaataatagtcaattttgagtttaagag |
25216290 |
T |
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| Q |
311 |
tggttaatgtgtgacatgaaaagaaggaaggggaaaa |
347 |
Q |
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| T |
25216289 |
tggttaatgtgtgacatgaaaagaaggaaggggaaaa |
25216253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 11 - 347
Target Start/End: Complemental strand, 25280744 - 25280405
Alignment:
| Q |
11 |
caaaggtacagagatttggagtggataactgaaatttcatctcagacatggaaaagccagattgtattcttaaattggctagtgtggcattcactatgca |
110 |
Q |
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| T |
25280744 |
caaaggtacagagatttggagtggataactgaaatttcatctcagacatggaaaagccagattgtattcttaaattggctagtgtggcattcactatgca |
25280645 |
T |
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| Q |
111 |
gaggtttaaataatcacgaactatacaaccggtaatgaccaaagtatttaatttgtttaacgttgaaaagggattgacacgaccatcatcgccgacacaa |
210 |
Q |
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| T |
25280644 |
gaggtttaaataatcacgaactatacaaccggtaatgaccaaagtatttaatttgtttaacgttgaaaagggattgacacgaccatcatcgccgacacaa |
25280545 |
T |
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| Q |
211 |
aatataaaacgatgtaaagacaagttggttatttgtggtaaatttagagaagtaggaaataaattttgatgagaat---aatagtcaattttgagtttaa |
307 |
Q |
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| T |
25280544 |
aatataaaacgatgtaaagacaagttggttatttgtggtaaatttagagaagtaggaaataaattttgatgagaataataatagtcaattttgagtttaa |
25280445 |
T |
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| Q |
308 |
gagtggttaatgtgtgacatgaaaagaaggaaggggaaaa |
347 |
Q |
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| T |
25280444 |
gagtggttaatgtgtgacatgaaaagaaggaaggggaaaa |
25280405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 11 - 343
Target Start/End: Complemental strand, 25064899 - 25064567
Alignment:
| Q |
11 |
caaaggtacagagatttggagtggataactgaaatttcatctcagacatggaaaagccagattgtattcttaaattggctagtgtggcattcactatgca |
110 |
Q |
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|||||||||| ||| |||| ||||||||||||||||||| ||||||| | |||||||||| || |||| ||||| |||| ||||||||| | |||||| |
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| T |
25064899 |
caaaggtacaaagacttggcgtggataactgaaatttcaactcagacttagaaaagccagtttctattgttaaactggcgagtgtggcacacgatatgca |
25064800 |
T |
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| Q |
111 |
gaggtttaaataatcacgaactatacaaccggtaatgaccaaagtatttaatttgtttaacgttgaaaagggattgacacgaccatcatcgccgacacaa |
210 |
Q |
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| T |
25064799 |
gaggtttcgatttttacgaacaatacaaccggtaatgaccaaactatttaatttgtttaatgtcaaaaagggattgactagaccatcattgccaacaccg |
25064700 |
T |
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| Q |
211 |
aatataaaacgatgtaaagacaagttggttatttgtggtaaatttagagaagtaggaaataaattttgatgagaataatagtcaattttgagtttaagag |
310 |
Q |
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| T |
25064699 |
aagagaaagccatttagagacaagttggttatttgtggtaaatttggagaagtaggaaataaattttgatgagagtaatggtcaattgtgagtttaagag |
25064600 |
T |
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| Q |
311 |
tggttaatgtgtgacatgaaaagaaggaagggg |
343 |
Q |
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| T |
25064599 |
tggttaatgtgtgacatgaaaagaaggaagggg |
25064567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 80 - 276
Target Start/End: Original strand, 7058317 - 7058513
Alignment:
| Q |
80 |
ttaaattggctagtgtggcattcactatgcagaggtttaaataatcacgaactatacaaccggtaatgaccaaagtatttaatttgtttaacgttgaaaa |
179 |
Q |
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|||||||||| ||||||||| || |||| |||||||| | |||||||||| ||| | | |||||| |||| |||| || |||||||| || ||||| |
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| T |
7058317 |
ttaaattggcaagtgtggcactcgatatgtagaggttttgtttatcacgaactgcacatctgttaatgatcaaactattcaacttgtttaatgtcgaaaa |
7058416 |
T |
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| Q |
180 |
gggattgacacgaccatcatcgccgacacaaaatataaaacgatgtaaagacaagttggttatttgtggtaaatttagagaagtaggaaataaattt |
276 |
Q |
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||||||| ||||||||||||||||||||||||| | ||| | |||| ||||| |||||||| | |||||||| |||||| ||||||||||||| |
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| T |
7058417 |
gggattggcacgaccatcatcgccgacacaaaagagaaagccttgtagagacaggttggttaatgctggtaaatccagagaatcaggaaataaattt |
7058513 |
T |
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