View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11857_low_17 (Length: 283)
Name: NF11857_low_17
Description: NF11857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11857_low_17 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 19 - 283
Target Start/End: Complemental strand, 33722956 - 33722698
Alignment:
| Q |
19 |
taaaatacaaatcaccgtctttatcaattaatttatacttgcatagattcattctacttccactttaaccccaccagagtaacaaatataattaattgta |
118 |
Q |
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||||||||||| |||||||||||| || ||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
33722956 |
taaaatacaaagcaccgtctttattaactaatttatacttgcatagactcg----acttatactttaaccccaccagagtaacaaatataattaattgta |
33722861 |
T |
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| Q |
119 |
aatcactttaaaatataaaactctttacactaacaatgacaatgcataaaaattaaactcttaaaactataataaatggccctataggctatacagcgag |
218 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
33722860 |
aatcactt-aaaatataaaactctttacactaacaatgacaatgcataaaaattaaactcttaaaactataataaatagccctataggctatagagcgag |
33722762 |
T |
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| Q |
219 |
atttacataaatgatttccaaaacaaaagaacatttataaatgatgacttgattcaatattgtct |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33722761 |
atttacataaatgatttccaaaacaaaagaacatttataaatgatgacttg-ttcaatattgtct |
33722698 |
T |
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