View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11857_low_20 (Length: 274)
Name: NF11857_low_20
Description: NF11857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11857_low_20 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 35 - 274
Target Start/End: Original strand, 40903015 - 40903245
Alignment:
| Q |
35 |
aaaccaaaccaaagtggtatgtattttaatgtttcttgtttnnnnnnnttaaagtactatactatgtttggaaatagaaaatcattcgtttattttctgt |
134 |
Q |
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| T |
40903015 |
aaaccaaaccaaagtggtatgtattttaatgtttcttgtttaaaaaaattaaagtactatactatgtttggaaatagaaaatcattcgtttattttctat |
40903114 |
T |
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| Q |
135 |
tcccactagtgcaagtaagtactatgcacctataaaggtcactgtcacgtagttagttccannnnnnnnnnnnnnnnnnnngagcactagtagcattgca |
234 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||| |
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| T |
40903115 |
tcccactagtgc----aagtactatgcacctataaaggtcactgacacgtagttagttcca-----aacacaacacaacacgagtactagtagcattgca |
40903205 |
T |
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| Q |
235 |
aagcaacaaacaacttactactcacccattcgattccatt |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
40903206 |
aagcaacaaacaacttactactcacccattcgattccatt |
40903245 |
T |
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