View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11857_low_22 (Length: 255)
Name: NF11857_low_22
Description: NF11857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11857_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 25216262 - 25216022
Alignment:
| Q |
1 |
aaggggaaaattgtggattaaaacatttgacatcaacttgtaattgttggacattatgtgagaaagcatatttcaaaattcttttgagtaagcgagggtc |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25216262 |
aaggggaaaattgtggattaacacatttgacatcaacttgtaattgttggacattatgtgagaaagcatatttcaaaattcttttgagtaagcgagggtc |
25216163 |
T |
|
| Q |
101 |
cattgtacctgaacggtgaaaatcgagggctagcagtgagttagtgtcattgcgaagagacaaaacatgagaaacaaatttggtaaaacccttgagattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25216162 |
cattgtacctgaacggtgaaaatcgagggctagcagtgaggtagtgtcattgcgaagagacaaaacatgagaaacaaatttggtaaaacccttgagattt |
25216063 |
T |
|
| Q |
201 |
tttggaaagtgtatagaacttaatttaagggatgaaagatg |
241 |
Q |
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| T |
25216062 |
tttggaaagtgtatagaacttaatttaagggatgaaagatg |
25216022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 25280414 - 25280174
Alignment:
| Q |
1 |
aaggggaaaattgtggattaaaacatttgacatcaacttgtaattgttggacattatgtgagaaagcatatttcaaaattcttttgagtaagcgagggtc |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25280414 |
aaggggaaaattgtggattaacacatttgacatcaacttgtaattgttggacattatgtgagaaagcatatttcaaaattcttttgagtaagcgagggtc |
25280315 |
T |
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| Q |
101 |
cattgtacctgaacggtgaaaatcgagggctagcagtgagttagtgtcattgcgaagagacaaaacatgagaaacaaatttggtaaaacccttgagattt |
200 |
Q |
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| T |
25280314 |
cattgtacctgaacggtgaaaatcgagggctagcagtgaggtagtgtcattgcgaagagacaaaacatgagaaacaaatttggtaaaacccttgagattt |
25280215 |
T |
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| Q |
201 |
tttggaaagtgtatagaacttaatttaagggatgaaagatg |
241 |
Q |
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| T |
25280214 |
tttggaaagtgtatagaacttaatttaagggatgaaagatg |
25280174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 25064572 - 25064332
Alignment:
| Q |
1 |
aaggggaaaattgtggattaaaacatttgacatcaacttgtaattgttggacattatgtgagaaagcatatttcaaaattcttttgagtaagcgagggtc |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||| |
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| T |
25064572 |
aagggggaaattgtggattaaaacatttgacatcaacttctaattgttggacattatgtgcgaaagcatatttcaaaattattttgagtatgcgagggtc |
25064473 |
T |
|
| Q |
101 |
cattgtacctgaacggtgaaaatcgagggctagcagtgagttagtgtcattgcgaagagacaaaacatgagaaacaaatttggtaaaacccttgagattt |
200 |
Q |
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| T |
25064472 |
cattgtaccctcacgctgaaaatcgagggcaagcagtgaggtagtgtcatcgcgaagagagaaaacgtgagacacaaatttggtgaaacccttgagattt |
25064373 |
T |
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| Q |
201 |
tttggaaagtgtatagaacttaatttaagggatgaaagatg |
241 |
Q |
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|||||||||||| | ||||||| ||||| ||| |||||||| |
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| T |
25064372 |
tttggaaagtgtctggaacttagtttaatggaggaaagatg |
25064332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 230
Target Start/End: Original strand, 7058622 - 7058804
Alignment:
| Q |
48 |
tggacattatgtgagaaagcatatttcaaaattcttttgagtaagcgagggtccattgtacctgaacggtgaaaatcgagggctagcagtgagttagtgt |
147 |
Q |
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|||||||||||||| |||||||||||||||||||||| ||||| | || | |||| | |||| || ||||||||| || | | |||| | | || |
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| T |
7058622 |
tggacattatgtgaaaaagcatatttcaaaattctttcgagtatgtgaagctccagtctaccccgacagtgaaaatcaagtgtgtgaagtgctgttgagt |
7058721 |
T |
|
| Q |
148 |
cattgcgaagagacaaaacatgagaaacaaatttggtaaaacccttgagattttttggaaagtgtatagaacttaatttaagg |
230 |
Q |
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|||||||||||||||| | ||||| ||||||||||| ||||||||| |||| || ||||||| || || ||||||||||| |
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| T |
7058722 |
cattgcgaagagacaatatctgagacacaaatttggtgaaacccttgggattcttcttaaagtgtctaaaagttaatttaagg |
7058804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 7222423 - 7222371
Alignment:
| Q |
38 |
ttgtaattgttggacattatgtgagaaagcatatttcaaaattcttttgagta |
90 |
Q |
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||||||| | |||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
7222423 |
ttgtaatcgctggacattatgtgaaaaagcatgtttcaaaattcttttgagta |
7222371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 202
Target Start/End: Original strand, 27701811 - 27701867
Alignment:
| Q |
146 |
gtcattgcgaagagacaaaacatgagaaacaaatttggtaaaacccttgagattttt |
202 |
Q |
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||||| ||||||||||||||| |||| || ||||||||||||| ||||||| |||| |
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| T |
27701811 |
gtcatcgcgaagagacaaaacccgagacacgaatttggtaaaactcttgagagtttt |
27701867 |
T |
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