View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11857_low_25 (Length: 238)
Name: NF11857_low_25
Description: NF11857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11857_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 2 - 222
Target Start/End: Original strand, 22512887 - 22513107
Alignment:
| Q |
2 |
tggtcgagtgagatgaatatctggtggcttcaaaatgccgtcactagtgaggaaggatagtgaccttgatccatatagtgttgcaccctcactctttctc |
101 |
Q |
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||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22512887 |
tggtctagtgagctcaatatctggtggcttcaaaatgccgtcactagtgaggaaggatagtgaccttgatccatatagtgttgcaccctcactctttctc |
22512986 |
T |
|
| Q |
102 |
actttgcttacatatggcaagcataaatcatgatagtctagcatgaacaacttctcatgttccaactcattacgtttcttttcataatgttgcttgagaa |
201 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22512987 |
actttgcttacatatggcaagcatagatcatgatagtctagcatgaacaacttctcatgttccaactcattacgtttcttttcataatgttgcttgagaa |
22513086 |
T |
|
| Q |
202 |
ctgaagcattattaaccagct |
222 |
Q |
| |
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||||||||||||||||||||| |
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| T |
22513087 |
ctgaagcattattaaccagct |
22513107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 25 - 156
Target Start/End: Complemental strand, 35723633 - 35723502
Alignment:
| Q |
25 |
gtggcttcaaaatgccgtcactagtgaggaaggatagtgaccttgatccatatagtgttgcaccctcactctttctcactttgcttacatatggcaagca |
124 |
Q |
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|||||||||||||||| ||||||||||||||| |||||| ||||||||||| | ||||| |||||| ||| ||||||||||||||||||||| ||| | |
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| T |
35723633 |
gtggcttcaaaatgccttcactagtgaggaagaatagtgttcttgatccatacaatgttgttccctcaatctctctcactttgcttacatatggtaagta |
35723534 |
T |
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| Q |
125 |
taaatcatgatagtctagcatgaacaacttct |
156 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
35723533 |
aaaatcatgatagtctagcatgaacaacttct |
35723502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 2 - 156
Target Start/End: Complemental strand, 35707693 - 35707539
Alignment:
| Q |
2 |
tggtcgagtgagatgaatatctggtggcttcaaaatgccgtcactagtgaggaaggatagtgaccttgatccatatagtgttgcaccctcactctttctc |
101 |
Q |
| |
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||||| |||||| | |||| || |||||||||| || || ||| |||| |||||| |||||| ||||||||||||||||||| |||||| |||||||| |
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| T |
35707693 |
tggtctagtgagctcaatagctagtggcttcaatattccttcagtagtaaggaagaatagtgttcttgatccatatagtgttgttccctcaatctttctc |
35707594 |
T |
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| Q |
102 |
actttgcttacatatggcaagcataaatcatgatagtctagcatgaacaacttct |
156 |
Q |
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||||||||||||||||| | | | ||||||| ||||||||||||||||||||||| |
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| T |
35707593 |
actttgcttacatatggtatgtagaaatcataatagtctagcatgaacaacttct |
35707539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 152 - 222
Target Start/End: Complemental strand, 27959284 - 27959214
Alignment:
| Q |
152 |
cttctcatgttccaactcattacgtttcttttcataatgttgcttgagaactgaagcattattaaccagct |
222 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27959284 |
cttctcatgttccaactcattaagtttcttttcataatgttgcttgagaactgaagcattattaaccagct |
27959214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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