View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11857_low_28 (Length: 201)
Name: NF11857_low_28
Description: NF11857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11857_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 159; Significance: 7e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 15 - 185
Target Start/End: Complemental strand, 27404464 - 27404294
Alignment:
| Q |
15 |
caaaggtgaatgtttgattgctcttaagtgctaactattgctaccaaatgtcatataagctataagttttcacaaactgtgttgaagagcttattgaagt |
114 |
Q |
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| T |
27404464 |
caaaggtgaatgtttgattgctcattagtgctaactattgctaccaaatgtcatataagctataagttttcacaaactgtgttgaagagcttatagaagt |
27404365 |
T |
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| Q |
115 |
aagctaaaacattgtagggagatggtgggtgggtcccatacaagttcagaagttcttatgcccgtaataaa |
185 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27404364 |
aagctaaaacattgtagggagatggtgggtgggtcccatacaagttcagaagttcttatgcccgtaataaa |
27404294 |
T |
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