View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11857_low_3 (Length: 507)
Name: NF11857_low_3
Description: NF11857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11857_low_3 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 241 - 507
Target Start/End: Original strand, 12399651 - 12399917
Alignment:
| Q |
241 |
agagtgataactgataagcttcaagatgttaaggtgccataacttaatgaacaaaatttctcttataagcaccaaaacaaaaaattgctgtttgaaagaa |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
12399651 |
agagtgataactgataagcttcaagatgttgaggtgccataacttaatgaacaaaatttctcttataagcaccaaa-caaaaaattgctgtttgaaagaa |
12399749 |
T |
|
| Q |
341 |
ttgaattcctgtgaaagttttgtcataaacaaaa-acaaactaatacttgttgtgttagttttgctctgttggtggagctgtccagtattgcttgactgc |
439 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12399750 |
ttgaattcctgtgaaagttttgtcataaacaaaaaacaaactaatacttgttgtgttagttttgctctgttggtggagctgtccagtattgcttgactgc |
12399849 |
T |
|
| Q |
440 |
tacaagtatcttttctttttgataaggtccttcttcatggtctctaattcttgcatcccactgcattt |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
12399850 |
tacaagtatcttttctttttgataaggtccttcttcatggtctctaatttttgcatcccactgcattt |
12399917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 12399429 - 12399601
Alignment:
| Q |
19 |
acattgtgcaatgaaatagtttctgaaaatatgatagtaccagaaaactgagctaaagggacaaccattaggcaacttgacatgaactggggaagtgtta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12399429 |
acattgtgcaatgaaatagtttctgaaaatatgatagtaccagaaaactgagctaaagggacaaccattaggcaacttgacatgaactggggaagtgtta |
12399528 |
T |
|
| Q |
119 |
tgaactgatgatatcttgtttcaaactcattataatattaagacaacttggagaaatattacacacagttggt |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12399529 |
tgaactgatgatatcttgtttcaaactcattataatattaagacaacttggagaaatattacacacagttggt |
12399601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 412 - 506
Target Start/End: Original strand, 28637453 - 28637547
Alignment:
| Q |
412 |
gtggagctgtccagtattgcttgactgctacaagtatcttttctttttgataaggtccttcttcatggtctctaattcttgcatcccactgcatt |
506 |
Q |
| |
|
|||| |||||||| || ||||||||||||||||||||||||||| |||| | ||||| | |||||||||| |||||| |||||||| |||||| |
|
|
| T |
28637453 |
gtggggctgtccaatactgcttgactgctacaagtatcttttctctttggtgtggtcccttttcatggtctgcaattctagcatcccattgcatt |
28637547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University