View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11857_low_4 (Length: 477)
Name: NF11857_low_4
Description: NF11857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11857_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 420; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 17 - 472
Target Start/End: Original strand, 11025056 - 11025518
Alignment:
| Q |
17 |
accaacaaggaagtagattgtttccccaaaaagaagaaaggtaactctattcttcgttcaattcaataatat--gcaaaggattatatcttttttcgata |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
11025056 |
accaacaaggaagtagattgtttccccaaaaagaagaaaggtaactctattcttcgttcaattcaataatatatgcaaaggattatatcttttttcgata |
11025155 |
T |
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| Q |
115 |
gattaatctaatgatcaatagtattatatcttttttcgataaatgatatttaggtcgaaagattaatcctatgacgaagtttagttgagtaatgcaaagg |
214 |
Q |
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| T |
11025156 |
gattaatctaatgatcaatagtattatatcttttttcgataaatgatatttaggtcgaaagattaatcctatgacgaagtttagttgagtaatgcaaagg |
11025255 |
T |
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| Q |
215 |
atttggaataattttaagaatagtccaaaatattattttcttctacatcttgaaaaacttatctaaccagatgaggatcgataaagtgtgtttgaatgga |
314 |
Q |
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| T |
11025256 |
atttggaataattttaagaatagtccaaaatattattttcttctacatcttgaaaaacttatctaaccagatgaggatcgataaagtgtgtttgaatgga |
11025355 |
T |
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| Q |
315 |
tgtttagattgccaaaatcacgggtaccttggttttgtaaagctctaaaatgtagtttttgcaaaaattatagtgactcatcatgattatgctcttacaa |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
11025356 |
tgtttagattgccaaaatcacgggtaccttggttttgtaaagctctaaaatgtagtttttgccaaaattatagtgactcatcatgattatgctctcacaa |
11025455 |
T |
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| Q |
415 |
ccaatcaaaacaagcataaagacgatc-----attgtaattagaaagtactctctctgcttct |
472 |
Q |
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| T |
11025456 |
ccaatcaaaacaagcataaagacgatcattatattgtaattagaaagtactctctctgattct |
11025518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 11040108 - 11040176
Alignment:
| Q |
19 |
caacaaggaagtagattgtttccccaaaaagaagaaaggtaactctattcttcgttcaattcaataata |
87 |
Q |
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||||||||||||||||||| |||| ||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
11040108 |
caacaaggaagtagattgtgtcccaaaaaacaagaaaggtaactctattctttgttcaattcaataata |
11040176 |
T |
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