View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11857_low_5 (Length: 476)
Name: NF11857_low_5
Description: NF11857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11857_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 9 - 461
Target Start/End: Complemental strand, 39730256 - 39729820
Alignment:
| Q |
9 |
agcagagataactatttaaacacgtattgagcaagcacatgaaaaaagaatatattcgtcatacttttttcaaagataatgtatgaataacatagcatca |
108 |
Q |
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| T |
39730256 |
agcagagataactatttaaacacgtattgagcaagcacatgaaaaaagaatctattcgtcatacttttttcaaagataatgtatgaataacatagcatca |
39730157 |
T |
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| Q |
109 |
atttttgcgacattttgcatatacattcatcgatcttcgatgaatcatgcatttgacattagtagatatttgagcactgcactaacgtaatcatcggtaa |
208 |
Q |
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| T |
39730156 |
atttttgcgacattttgcatatacattca--------------atcatgcattagacattagtagatatttgagcactgcaccaacgtaatcatcggtaa |
39730071 |
T |
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| Q |
209 |
caccaatctaaaataagtaaagattcagctggttatcaattatcttgagtaaataaaaatagacaacttatctaaaacgtgccacgtgttatgaaatact |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39730070 |
taccaatctaaaataagtaaagattcagctggttatcaattatcttgagtaaataaaaatagaaaacttatctaaaacgtgccacgtgttatgaaatact |
39729971 |
T |
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| Q |
309 |
tctaagtgcaacacgtgtattacactaggctaaaaatcataacaattaaaaaattgtatttttgtcatatataatgtaacaaatgttcaagagaggtgat |
408 |
Q |
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||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
39729970 |
tctaagt-caacacgtgtaatacactaggctaaaaatcataacaatt-aaaaattgtatttttgtcatatataatgcaacaaatgttcaagagaggtgat |
39729873 |
T |
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| Q |
409 |
tacattacaacataagatcaagatggagaaacaaacagaaaaggagacaaaac |
461 |
Q |
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| T |
39729872 |
tacattaaaacataagatcaagatggagaaacaaacagagaaggagacaaaac |
39729820 |
T |
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