View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11857_low_7 (Length: 418)

Name: NF11857_low_7
Description: NF11857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11857_low_7
NF11857_low_7
[»] chr5 (4 HSPs)
chr5 (18-167)||(42474054-42474203)
chr5 (219-382)||(42474255-42474419)
chr5 (303-382)||(20986545-20986624)
chr5 (308-383)||(5396360-5396434)
[»] chr7 (1 HSPs)
chr7 (76-128)||(45312210-45312262)
[»] chr4 (3 HSPs)
chr4 (308-382)||(31529814-31529888)
chr4 (308-371)||(35297573-35297636)
chr4 (308-379)||(43404597-43404668)
[»] chr2 (2 HSPs)
chr2 (88-129)||(37190705-37190746)
chr2 (303-350)||(38462320-38462367)
[»] chr6 (1 HSPs)
chr6 (308-379)||(15057109-15057180)


Alignment Details
Target: chr5 (Bit Score: 114; Significance: 1e-57; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 18 - 167
Target Start/End: Original strand, 42474054 - 42474203
Alignment:
Q  18 cgaagcgataaacaccattaaaatttatacatactgtaaagtctcggtttcgaaccgagtgaaggtgtccaacctaacaattttggtattgtcggttgag 117  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||  ||||||||||| ||||| |||| |||||||| |||||||||||||||||||||    
T  42474054 cgaagcggtaaacaccattaaaatttatacatactgtaaggtctcaatttcgaaccgaatgaagatgtctaacctaaccattttggtattgtcggttgag 42474153  T
Q  118 ctatgctttacgtacataacccatattttcattataatgataagtgatga 167  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  42474154 ctatgttttacgtacataacccatattttcattataatgataagtgatga 42474203  T

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Target: chr5; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 219 - 382
Target Start/End: Original strand, 42474255 - 42474419
Alignment:
Q  219 gaaactagtacacatctttaaataattaagaaaaacaataaaaggtgacatgtcttctacataggcatatgcagggtagtaacatcg-gatagcactttg 317  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | || || ||||    
T  42474255 gaaattagtacacatctttaaataattaagaaaaacaataaaaggtgacatgtcttctacataggcatatgcatggtagtaacatcgcggtaacattttg 42474354  T
Q  318 gtgacattaggatgttaatgtcatatgatattggtcaaccacaatcttacaagtgtgcaaaagga 382  Q
    ||||||||| | |||  ||||||||||| |||||||||| | |||||||||| ||||||||||||    
T  42474355 gtgacattatggtgtctatgtcatatgacattggtcaacaataatcttacaattgtgcaaaagga 42474419  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 303 - 382
Target Start/End: Complemental strand, 20986624 - 20986545
Alignment:
Q  303 tcggatagcactttggtgacattaggatgttaatgtcatatgatattggtcaaccacaatcttacaagtgtgcaaaagga 382  Q
    ||||||| ||||||||||||||| |||||  |||||||| ||||||||  |||| ||||| | | |||||||||||||||    
T  20986624 tcggataacactttggtgacattgggatgccaatgtcatgtgatattgaccaactacaatgtcataagtgtgcaaaagga 20986545  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 383
Target Start/End: Complemental strand, 5396434 - 5396360
Alignment:
Q  308 tagcactttggtgacattaggatgttaatgtcatatgatattggtcaaccacaatcttacaagtgtgcaaaaggat 383  Q
    ||||| |||||||||||| || ||  |||||||  ||| |||||||||||||||| | ||||||||||||||||||    
T  5396434 tagcaatttggtgacattggggtgccaatgtcag-tgacattggtcaaccacaatatcacaagtgtgcaaaaggat 5396360  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 76 - 128
Target Start/End: Complemental strand, 45312262 - 45312210
Alignment:
Q  76 gtgaaggtgtccaacctaacaattttggtattgtcggttgagctatgctttac 128  Q
    ||||||||||||||||||||||||| || |||||| |||||||||||||||||    
T  45312262 gtgaaggtgtccaacctaacaatttcggcattgtcagttgagctatgctttac 45312210  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 308 - 382
Target Start/End: Complemental strand, 31529888 - 31529814
Alignment:
Q  308 tagcactttggtgacattaggatgttaatgtcatatgatattggtcaaccacaatcttacaagtgtgcaaaagga 382  Q
    ||||||||||||||||||  | ||  ||| |||| |||||||||||||||||||| | |||||||||||||||||    
T  31529888 tagcactttggtgacattgaggtgccaatttcatgtgatattggtcaaccacaatgtcacaagtgtgcaaaagga 31529814  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 371
Target Start/End: Complemental strand, 35297636 - 35297573
Alignment:
Q  308 tagcactttggtgacattaggatgttaatgtcatatgatattggtcaaccacaatcttacaagt 371  Q
    |||||||| ||||| ||| || ||| |||||||| ||||||| |||||||||||| ||||||||    
T  35297636 tagcacttgggtgatattggggtgtcaatgtcatgtgatattagtcaaccacaatgttacaagt 35297573  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 379
Target Start/End: Complemental strand, 43404668 - 43404597
Alignment:
Q  308 tagcactttggtgacattaggatgttaatgtcatatgatattggtcaaccacaatcttacaagtgtgcaaaa 379  Q
    ||||||||| ||||||||||| ||  |||||||| ||| |||| ||||||||||| | ||||||||| ||||    
T  43404668 tagcactttagtgacattagggtgccaatgtcatctgacattgatcaaccacaatgtcacaagtgtgaaaaa 43404597  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 88 - 129
Target Start/End: Complemental strand, 37190746 - 37190705
Alignment:
Q  88 aacctaacaattttggtattgtcggttgagctatgctttacg 129  Q
    ||||||||||||||| ||||||||||||||||| ||||||||    
T  37190746 aacctaacaattttgatattgtcggttgagctaggctttacg 37190705  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 303 - 350
Target Start/End: Complemental strand, 38462367 - 38462320
Alignment:
Q  303 tcggatagcactttggtgacattaggatgttaatgtcatatgatattg 350  Q
    ||||||||||||||| ||||||||| ||||||||||||| ||| ||||    
T  38462367 tcggatagcactttgatgacattagaatgttaatgtcatgtgacattg 38462320  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 379
Target Start/End: Complemental strand, 15057180 - 15057109
Alignment:
Q  308 tagcactttggtgacattaggatgttaatgtcatatgatattggtcaaccacaatcttacaagtgtgcaaaa 379  Q
    |||||||||||||||||| || ||| |||||||| ||| ||||| |||||| ||| | |||||||| |||||    
T  15057180 tagcactttggtgacattggggtgtcaatgtcatgtgacattggccaaccaaaatatcacaagtgtacaaaa 15057109  T

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