View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11857_low_8 (Length: 372)
Name: NF11857_low_8
Description: NF11857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11857_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 98; Significance: 3e-48; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 157 - 315
Target Start/End: Complemental strand, 33722556 - 33722394
Alignment:
| Q |
157 |
agttttcagaactcttgtgtcgaaagtttaatagaagataagttaatgagatcgctcataaattaacataggtaattctatctcatgctagctcctacgt |
256 |
Q |
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| T |
33722556 |
agttttcagaactctcatgttgaaagtttaatagaagataagttaatgagatcgctcataaattaacatagataattccatctcatgctagctcccacgt |
33722457 |
T |
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| Q |
257 |
ttatacgatatgtatcat----tattgaacatttgataactaataaaaagcaaagaatttctt |
315 |
Q |
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| T |
33722456 |
ttatatgatatatatagttatgtattgaacatttgatagctaataaaaagcaatgaatttctt |
33722394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 33722667 - 33722619
Alignment:
| Q |
2 |
aaaatgattaatgtaaatttgatttatacaaagttgaatcggattatct |
50 |
Q |
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| T |
33722667 |
aaaatgattaatgtaaatttgatttatacaaagttgaatcggattatct |
33722619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 93
Target Start/End: Complemental strand, 33722593 - 33722559
Alignment:
| Q |
59 |
ttacatccacttgttttgtagtaagttgtttggta |
93 |
Q |
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| T |
33722593 |
ttacatccacttgttttgtagtaagttgtttggta |
33722559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 316
Target Start/End: Complemental strand, 19315880 - 19315839
Alignment:
| Q |
275 |
tattgaacatttgataactaataaaaagcaaagaatttcttc |
316 |
Q |
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| T |
19315880 |
tattgaacatttgatagctaataaaaagcaatgactttcttc |
19315839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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