View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11858_high_17 (Length: 251)

Name: NF11858_high_17
Description: NF11858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11858_high_17
NF11858_high_17
[»] chr4 (1 HSPs)
chr4 (1-244)||(42065815-42066058)
[»] chr1 (1 HSPs)
chr1 (1-244)||(17069409-17069652)
[»] chr2 (4 HSPs)
chr2 (17-210)||(32132978-32133171)
chr2 (118-201)||(22022999-22023082)
chr2 (1-30)||(44378353-44378382)
chr2 (1-30)||(44393933-44393962)
[»] scaffold0377 (1 HSPs)
scaffold0377 (5-183)||(10248-10426)
[»] chr5 (3 HSPs)
chr5 (5-183)||(26696156-26696334)
chr5 (5-183)||(26965888-26966066)
chr5 (83-169)||(33853658-33853744)
[»] chr8 (1 HSPs)
chr8 (101-180)||(44551055-44551134)
[»] scaffold0106 (1 HSPs)
scaffold0106 (59-132)||(48023-48096)
[»] chr6 (2 HSPs)
chr6 (96-169)||(16003209-16003282)
chr6 (1-171)||(16225370-16225540)
[»] scaffold0001 (1 HSPs)
scaffold0001 (96-169)||(200129-200202)
[»] chr7 (1 HSPs)
chr7 (101-165)||(12735535-12735599)


Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 42065815 - 42066058
Alignment:
Q  1 tattatgggtcgtgttcaattggtgaaatccatagtgcacggtatgttggtttattcctttcatatttactgttggcctgctcgtttattgcatttgctt 100  Q
    |||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| ||||| || ||| |||||||||||||||| || ||| |||||    
T  42065815 tattatgggtcgggttcaattggtgaaatcaatagtgcatggtatgttggtttattcttttcacatataccgttggcctgctcgtttgttacatatgctt 42065914  T
Q  101 gataggtggattaaaatttttgtttggagtggtgatattaatactcgcaaaatttgtacggtttcttggaagcaagtttgtctctcgtgggagtctggcg 200  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| || ||  ||||||| |||||||    
T  42065915 gataggtggattaaaaattttgtttggagtggggatattaatactcgcaaaatttgtacggtttcttggaaccaagtgtgccttccgtgggactctggcg 42066014  T
Q  201 gcctcgatcttaagtcgacacggtctattaatgcctctctgctt 244  Q
    | || |||||||||||||| |||||||||||||||||| |||||    
T  42066015 gtcttgatcttaagtcgactcggtctattaatgcctctttgctt 42066058  T

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Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 17069652 - 17069409
Alignment:
Q  1 tattatgggtcgtgttcaattggtgaaatccatagtgcacggtatgttggtttattcctttcatatttactgttggcctgctcgtttattgcatttgctt 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||| ||||||||| || || ||||||||| |||||| ||||||||| |||||| ||||     
T  17069652 tattatgggtcgggttcaattggtgaaatccatagtgcacggtaagttggtttactctttccatatttaccgttggcttgctcgtttgttgcatatgctg 17069553  T
Q  101 gataggtggattaaaatttttgtttggagtggtgatattaatactcgcaaaatttgtacggtttcttggaagcaagtttgtctctcgtgggagtctggcg 200  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||   |||||| || || |    
T  17069552 gataggtggattaaaaattttgtttggagtggtgatattaatactcgcaaaatttgtacggtttcttggaaccaagtttgccttctgtgggattcaggtg 17069453  T
Q  201 gcctcgatcttaagtcgacacggtctattaatgcctctctgctt 244  Q
    |  | ||||||||||||||||||||||| |||||||| ||||||    
T  17069452 gttttgatcttaagtcgacacggtctatcaatgcctcgctgctt 17069409  T

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Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 210
Target Start/End: Complemental strand, 32133171 - 32132978
Alignment:
Q  17 caattggtgaaatccatagtgcacggtatgttggtttattcctttcatatttactgttggcctgctcgtttattgcatttgcttgataggtggattaaaa 116  Q
    ||||||||||| || ||| | || |||||| ||||||| || |||||||| ||  | ||||||  | |||||||| |  || | ||||| ||||| ||||    
T  32133171 caattggtgaagtcgataatacatggtatgctggtttactcatttcatatctatcggtggcctattagtttattgaagatgttggatagatggatcaaaa 32133072  T
Q  117 tttttgtttggagtggtgatattaatactcgcaaaatttgtacggtttcttggaagcaagtttgtctctcgtgggagtctggcggcctcgatct 210  Q
     ||||||||||||||||||||||  |||||||||| ||||||| ||||| ||||| |||||||||||  | ||||||| ||| ||||| |||||    
T  32133071 attttgtttggagtggtgatatttctactcgcaaagtttgtactgtttcgtggaaccaagtttgtcttccttgggagtttggaggccttgatct 32132978  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 201
Target Start/End: Complemental strand, 22023082 - 22022999
Alignment:
Q  118 ttttgtttggagtggtgatattaatactcgcaaaatttgtacggtttcttggaagcaagtttgtctctcgtgggagtctggcgg 201  Q
    |||||||||||| |||||||||  |||||| |||||||| || ||||||||||| ||||| |||||| | ||||| | ||||||    
T  22023082 ttttgtttggagcggtgatatttttactcggaaaatttgcactgtttcttggaatcaagtctgtctcccatgggaatttggcgg 22022999  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 44378353 - 44378382
Alignment:
Q  1 tattatgggtcgtgttcaattggtgaaatc 30  Q
    ||||||||||||||||||||||||||||||    
T  44378353 tattatgggtcgtgttcaattggtgaaatc 44378382  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 44393933 - 44393962
Alignment:
Q  1 tattatgggtcgtgttcaattggtgaaatc 30  Q
    ||||||||||||||||||||||||||||||    
T  44393933 tattatgggtcgtgttcaattggtgaaatc 44393962  T

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Target: scaffold0377 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0377
Description:

Target: scaffold0377; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 183
Target Start/End: Complemental strand, 10426 - 10248
Alignment:
Q  5 atgggtcgtgttcaattggtgaaatccatagtgcacggtatgttggtttattcctttcatatttactgttggcctgctcgtttattgcatttgcttgata 104  Q
    ||||| ||||| |||||||| || || ||||| ||||| ||| |||| ||||| |||||||| ||| ||||||||  ||| |||||| |   | | |||     
T  10426 atggggcgtgtccaattggtcaagtctatagtacacggcatgctggtgtattcttttcatatctaccgttggcctattcggttattgaagacgttggatc 10327  T
Q  105 ggtggattaaaatttttgtttggagtggtgatattaatactcgcaaaatttgtacggtttcttggaagcaagtttgtct 183  Q
    | ||||| |||| |||| ||||||||||||||||| | | ||| ||||| || |||||||||||| |||| ||||||||    
T  10326 gttggatcaaaaattttatttggagtggtgatatttacagtcgaaaaatatgcacggtttcttggcagcaggtttgtct 10248  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 183
Target Start/End: Original strand, 26696156 - 26696334
Alignment:
Q  5 atgggtcgtgttcaattggtgaaatccatagtgcacggtatgttggtttattcctttcatatttactgttggcctgctcgtttattgcatttgcttgata 104  Q
    ||||| ||||| |||||||| || || ||||| ||||| ||| |||| ||||| |||||||| ||| ||||||||  ||| |||||| |   | | |||     
T  26696156 atggggcgtgtccaattggtcaagtctatagtacacggcatgctggtgtattcttttcatatctaccgttggcctattcggttattgaagacgttggatc 26696255  T
Q  105 ggtggattaaaatttttgtttggagtggtgatattaatactcgcaaaatttgtacggtttcttggaagcaagtttgtct 183  Q
    | ||||| |||| |||| ||||||||||||||||| | | ||| ||||| || |||||||||||| |||| ||||||||    
T  26696256 gttggatcaaaaattttatttggagtggtgatatttacagtcgaaaaatatgcacggtttcttggcagcaggtttgtct 26696334  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 183
Target Start/End: Original strand, 26965888 - 26966066
Alignment:
Q  5 atgggtcgtgttcaattggtgaaatccatagtgcacggtatgttggtttattcctttcatatttactgttggcctgctcgtttattgcatttgcttgata 104  Q
    ||||| ||||| |||||||| || || ||||| ||||| ||| |||| ||||| |||||||| ||| ||||||||  ||| |||||| |   | | |||     
T  26965888 atggggcgtgtccaattggtcaagtctatagtacacggcatgctggtgtattcttttcatatctaccgttggcctattcggttattgaagacgttggatc 26965987  T
Q  105 ggtggattaaaatttttgtttggagtggtgatattaatactcgcaaaatttgtacggtttcttggaagcaagtttgtct 183  Q
    | ||||| |||| |||| ||||||||||||||||| | | ||| ||||| || |||||||||||| |||| ||||||||    
T  26965988 gttggatcaaaaattttatttggagtggtgatatttacagtcgaaaaatatgcacggtttcttggcagcaggtttgtct 26966066  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 83 - 169
Target Start/End: Complemental strand, 33853744 - 33853658
Alignment:
Q  83 cgtttattgcatttgcttgataggtggattaaaatttttgtttggagtggtgatattaatactcgcaaaatttgtacggtttcttgg 169  Q
    ||||||||| |  |||| |||||||| ||||||| ||||||||||||||| || ||| |||||||||| ||||| || |||||||||    
T  33853744 cgtttattgaaaatgctcgataggtgcattaaaaattttgtttggagtggggacattgatactcgcaagatttgcactgtttcttgg 33853658  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 101 - 180
Target Start/End: Complemental strand, 44551134 - 44551055
Alignment:
Q  101 gataggtggattaaaatttttgtttggagtggtgatattaatactcgcaaaatttgtacggtttcttggaagcaagtttg 180  Q
    ||||| |||||||||| |||| |||||||||| || ||| | || |||||||||||||| |||||||||||||| |||||    
T  44551134 gatagatggattaaaaattttatttggagtggcgacatttacacgcgcaaaatttgtacagtttcttggaagcaggtttg 44551055  T

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Target: scaffold0106 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 132
Target Start/End: Original strand, 48023 - 48096
Alignment:
Q  59 tttcatatttactgttggcctgctcgtttattgcatttgcttgataggtggattaaaatttttgtttggagtgg 132  Q
    |||||||||||| ||||||| |||||||| |||||||||| |||||| ||||| ||||   |||||||||||||    
T  48023 tttcatatttaccgttggccagctcgtttgttgcatttgcgtgatagatggataaaaaaaattgtttggagtgg 48096  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 96 - 169
Target Start/End: Complemental strand, 16003282 - 16003209
Alignment:
Q  96 tgcttgataggtggattaaaatttttgtttggagtggtgatattaatactcgcaaaatttgtacggtttcttgg 169  Q
    |||| |||||||||||||||| |||||| |||||||| || || || ||||||||||| ||||| |||||||||    
T  16003282 tgctcgataggtggattaaaaattttgtgtggagtggggacatcaacactcgcaaaatatgtacagtttcttgg 16003209  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 16225370 - 16225540
Alignment:
Q  1 tattatgggtcgtgttcaattggtgaaatccatagtgcacggtatgttggtttattcctttcatatttactgttggcctgctcgtttattgcatttgctt 100  Q
    |||||||||||| || ||||| || ||||| || |||||| ||||| |||| ||||| |||||||||||  | ||||||   |||||  ||    || |     
T  16225370 tattatgggtcgagtccaattagttaaatcgattgtgcacagtatgctggtgtattcttttcatatttatcgatggcctatccgttttgtgacgatgttg 16225469  T
Q  101 gataggtggattaaaatttttgtttggagtggtgatattaatactcgcaaaatttgtacggtttcttggaa 171  Q
    |||  |||||| ||||  |||||||||||||| ||||||  |||||||||||| |  ||||||||||||||    
T  16225470 gatcagtggataaaaaaatttgtttggagtggggatatttttactcgcaaaatctacacggtttcttggaa 16225540  T

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Target: scaffold0001 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 169
Target Start/End: Complemental strand, 200202 - 200129
Alignment:
Q  96 tgcttgataggtggattaaaatttttgtttggagtggtgatattaatactcgcaaaatttgtacggtttcttgg 169  Q
    |||| |||||||||||||||| |||||| |||||||| || || || ||||||||||  ||||| |||||||||    
T  200202 tgctcgataggtggattaaaaattttgtgtggagtggggacatcaacactcgcaaaacatgtacagtttcttgg 200129  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 165
Target Start/End: Complemental strand, 12735599 - 12735535
Alignment:
Q  101 gataggtggattaaaatttttgtttggagtggtgatattaatactcgcaaaatttgtacggtttc 165  Q
    |||||||||||||||| |||||| |||||||| || || || ||||| ||||| ||||| |||||    
T  12735599 gataggtggattaaaaattttgtctggagtggggacatcaacactcgtaaaatatgtacagtttc 12735535  T

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