View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11858_high_8 (Length: 389)
Name: NF11858_high_8
Description: NF11858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11858_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 20 - 379
Target Start/End: Original strand, 9866398 - 9866759
Alignment:
| Q |
20 |
ggttggacatggatcccatcacacctatattttgttttcgtttatatgtgtatgtgtcaacaaaataagttagttcattatatgatatcatgttaggttt |
119 |
Q |
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| T |
9866398 |
ggttggacatggatcccatgacacctatattctgtttttgtt-atatgtgtatgtgtcaacaaaaaaagttagttcattatatgatattatgttaggttt |
9866496 |
T |
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| Q |
120 |
tcaaaatgttctttaaacccagcaaacaagtttagaaaacatgagaaaaactttgcttagtccacataacaaaaacacggacagacagacagatagatag |
219 |
Q |
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| T |
9866497 |
tcaaaatgttctt-aaacccaacaaacaagtttagaaaacatgagaaaaaatttgctcagtccacataacaaaaacacgaacagacagacagatagacag |
9866595 |
T |
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| Q |
220 |
acggatagatagg----gattactaacctcagatactgaaatggtaggaagaagagtactaagatgaagatatatacgttgaagaagaccagtgccacaa |
315 |
Q |
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| T |
9866596 |
acagatagatagatagagattactaacctcggatactgaaatggtaggaagaagagtactaagatgaagatatatacgttgaagaagaccagtgccacaa |
9866695 |
T |
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| Q |
316 |
ttgcaagctctttcactaccttctgtatttcgcattctttcttcatggcaattctcaacctttg |
379 |
Q |
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| T |
9866696 |
ttgcaagctctttcactaccttctgtatttcgcattctttcttcatggcaattctcaacctttg |
9866759 |
T |
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