View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11858_high_9 (Length: 359)
Name: NF11858_high_9
Description: NF11858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11858_high_9 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 359
Target Start/End: Complemental strand, 30603766 - 30603425
Alignment:
| Q |
18 |
gatggaacatggaccaagcagagcttaaatatcctcatttgcaaaaagaatctatcaaatagttacacgaaactacctcaggatagaaacctttagaaca |
117 |
Q |
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| T |
30603766 |
gatggaacatggaccaagcagagcttaaatatcctgatttgcaaaaagaatttatcaaatagttacacgaaactacctcaggatagaaacctttagaaca |
30603667 |
T |
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| Q |
118 |
cataaggttgaaaatatcaatgactttagcaaacagtttattctcataaaagctctttatcatcatgttgtaacatcgtgtatcatgatgaacacccctt |
217 |
Q |
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| T |
30603666 |
cattaggttgaaaatatcaatgactttagcaaacagtttattctcataaaagttatttatcatcatgttgtaacatcgtgtatcatacggaacacccctt |
30603567 |
T |
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| Q |
218 |
ttaggcataatgtcgaaaagatcttgtgctttttcaacttgattgcgaacagaatagccattgatcaaatttaaatatgtcacaatagtaaagttataac |
317 |
Q |
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||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
30603566 |
ttaaacatattgtcgaaaagatcttgtgctttttcaacttgattgcgaacagaatagccattgatcaaatttaaatatgtcacaacaataaagttataac |
30603467 |
T |
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| Q |
318 |
cagccttcaacatcctggtaagcaggattccactttctctca |
359 |
Q |
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| T |
30603466 |
cagccttcaacatcttggtaaggaggattccactttctctca |
30603425 |
T |
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