View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11858_low_1 (Length: 965)
Name: NF11858_low_1
Description: NF11858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11858_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 149; Significance: 3e-78; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 575 - 840
Target Start/End: Complemental strand, 27897010 - 27896743
Alignment:
| Q |
575 |
tataatggctatgcatagaccgtttaaaatatttttacatcgtcgtccaattaaaactcatcatattgccacgtaagtnnnnnnnn-tagaat---tatt |
670 |
Q |
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| T |
27897010 |
tataatggctatgcatagaccgtgtaaaacatttttacatcgtcgtccaattaaaactcatcatattgccatgtagataaaaaaaaatacaaagtatttt |
27896911 |
T |
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| Q |
671 |
gtgtaagaagcgaaacgcaccgttttggaaaagggtttttgattccgttccaatagcatcatcaaacacacagtgatagataacagcagcaaataccaga |
770 |
Q |
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| T |
27896910 |
gtataagatgcgaaacgcaccgttttggaaaagggtttttgattccgttccaatagcatcatcagacacac--tgatagataacagcagcaaacaccaga |
27896813 |
T |
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| Q |
771 |
tttctctcgttccgctctctccttcgatcggttaactcgtatgtctcacttttctctcaatacctaaaat |
840 |
Q |
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| T |
27896812 |
tttctctagctccgctctctccttcgatcggttaactcgtatgtctcatttttctctcaatccctaaaat |
27896743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 15 - 210
Target Start/End: Complemental strand, 27900219 - 27900008
Alignment:
| Q |
15 |
atgaacatccctttacatgagggtcaacctgcaagtgttgtcatttacaaggtgaaatactccacctttttcctcctc----------------agagca |
98 |
Q |
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| T |
27900219 |
atgaacacccctttacatgagggtcaacctgcaagtgtcgccatttataaggtgaaatactccacctttttcctcttcctaacaagacaccaccaaagca |
27900120 |
T |
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| Q |
99 |
ccctcatagtcctacggggaaacttcaaattgagtgaaattgtcattcaatgagctacacttgattggacacaaacataaaccttttatatttagacaca |
198 |
Q |
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| T |
27900119 |
ccctcatagtcctaagaggaaacttcaaattgagcgaaatcgtggttcagtgagctacacttggttggacacaaacatagaacttttatatttaggcaca |
27900020 |
T |
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| Q |
199 |
cgctcattagtt |
210 |
Q |
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| T |
27900019 |
cgctcattagtt |
27900008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 13 - 92
Target Start/End: Original strand, 27882687 - 27882766
Alignment:
| Q |
13 |
agatgaacatccctttacatgagggtcaacctgcaagtgttgtcatttacaaggtgaaatactccacctttttcctcctc |
92 |
Q |
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| T |
27882687 |
agatgaacatccctttacatgagggtaaacctgcaagtgttgccatttacaaggttaaatactccacctttttcctcctc |
27882766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 361 - 412
Target Start/End: Complemental strand, 27899880 - 27899829
Alignment:
| Q |
361 |
aaattcattttacactcacgttgcattaaaatcactatttaaagatatcact |
412 |
Q |
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| T |
27899880 |
aaattcattttacacgcacattgtattaaaatcactatttgaagaaatcact |
27899829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 26222528 - 26222582
Alignment:
| Q |
28 |
tacatgagggtcaacctgcaagtgttgtcatttacaaggtgaaatactccacctt |
82 |
Q |
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| T |
26222528 |
tacatgaaggtcaacttgcatgtgttgtcatttacaaggtgaactattccacctt |
26222582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 208
Target Start/End: Original strand, 41827877 - 41827922
Alignment:
| Q |
163 |
ttggacacaaacataaaccttttatatttagacacacgctcattag |
208 |
Q |
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| T |
41827877 |
ttggacacaaccataaatcttttatatttaggcacacactcattag |
41827922 |
T |
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