View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11858_low_11 (Length: 319)
Name: NF11858_low_11
Description: NF11858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11858_low_11 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 37146916 - 37146598
Alignment:
| Q |
1 |
tttggttcttggtttcgttctgtgttgacggtatgtccatacgccagttttttgaactctggttagtgcttcaaatgttttcaaatcatctctcttttgc |
100 |
Q |
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| T |
37146916 |
tttggttcttggtttcgttctgtgtcgacggtatgtccatacgccagttttttgaactctggttagtgcttcaaatgttttcaaatcatctctcttttgc |
37146817 |
T |
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| Q |
101 |
aatctggtttcgctcccatacgcgagtgtgttggattgtcctcatgaccgcggtttgtttgttgggatgaactaggggttgatctactagtgttatttta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37146816 |
aatctggtttcgctcccatacgcgagtgtgttggattgtcctcatgaccgcggtttgtttgttgggatgaactaggggttgatctactagtgttatttta |
37146717 |
T |
|
| Q |
201 |
ttcgtatttattactcgtttgggttgaactacacatttatgtagactcactaggtcaggtcttttgctcccgnnnnnnnngtacgtctttactttcatta |
300 |
Q |
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| T |
37146716 |
ttcgtatttattacttgtttgggttggactacacatttatgtagactcactaggtcaggtcttttgctcccgttttttttgtacgtctttactttcatta |
37146617 |
T |
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| Q |
301 |
atctaatacttgtttgctt |
319 |
Q |
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||||||||||||||||||| |
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| T |
37146616 |
atctaatacttgtttgctt |
37146598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 139
Target Start/End: Original strand, 25710777 - 25710821
Alignment:
| Q |
95 |
ttttgcaatctggtttcgctcccatacgcgagtgtgttggattgt |
139 |
Q |
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|||||||| ||||||||||||| |||||| |||||||||||||| |
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| T |
25710777 |
ttttgcaacttggtttcgctcccgtacgcgggtgtgttggattgt |
25710821 |
T |
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